Rh1BG283000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009716
Physical Location & Seq
Forward (+)
41950697 .. 41951824
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG283000.1

Sequence Viewer

Length: 837 bp
ATGGTTGCCCAATTGGACTCGTACGTTGCCCTAGAAGAAAACCCAGATCACCAATTACAGAACCAGCAAGATGATGATCCATATGAAGCAGAGGAGACACTCTCTCTCTGTGATCTTCCTACACATAGCGACTCAGCTCATTGGGATGACTTCTCCAAAGAGTATCAGAGCTCTTCATTTGATAGAGATGGAGACAACTTCTTTGAGTTCTTCAGTGAAGAGTTCACGGCCTCAACGTACGCATCTGAGAATAAAGACATCATCTTCTGTGGGAAGAAGCTCATTCCCTACAGCAAAGAAGAACCACATGTTGTTGCAGCAGAGAAGAAGACGACCCAGAAAAACACAGAAACGAGCAACAAAAGTTCCACCAAGAAATGGGGATTGTTTCGATGGAGAAGGTTTAGGAGATCGAAACCCAAGCTTGTCACTAAGTACTCCAAGCTGAGTCAAGTAAAAGATGGTAGAAGTAATACTATTTCATTTCCCACATCAAAAAGCTACAAAAGGTGTGATCCTTCACTATGGAAAGTGTCGGTTCTGTCTAGCAACCGATCAAAATCAAAGTGGCATTTGTTCATGTTTGGAATAACTAAGTTTCCTACAGAGATGGAGCTGAGGGACATCAAGAGCAGGCAAAGCAGGAGGAACCCATCGACCATGTTTGGGGCTAATTGTGAAGCAAGTAATGAAATAATGGGAAAGGGTAGAAAGGAAATTAGCAGTAATAGTAGCAGCAGCAGCAGCAGCAATACCAGTATTAGAGCTAAGGGATTGTGGGGTTTGTTGAGAGTTATAGGGTGTAGTAGTCAGCTTCCAAAGGCCGTCCTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

31.75

Weight (kDa)

9.14

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 378
AclWI GGATC 2 cut(s) 71, 509
AcuI CTGAAG 1 cut(s) 196
AfaI GTAC 3 cut(s) 23, 239, 437
AfiI CCNNNNNNNGG 2 cut(s) 378, 666
AflIII ACRYGT 1 cut(s) 307
AluBI AGCT 9 cut(s) 137, 171, 280, 424, 445, 501, 616, 767, 814
AluI AGCT 9 cut(s) 137, 171, 280, 424, 445, 501, 616, 767, 814
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 2 cut(s) 89, 186
AlwI GGATC 2 cut(s) 71, 509
AoxI GGCC 2 cut(s) 228, 822
ApeKI GCWGC 6 cut(s) 317, 735, 738, 741, 744, 747
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AsuHPI GGTGA 1 cut(s) 41
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 617
BbvI GCAGC 6 cut(s) 329, 747, 750, 753, 756, 759
BccI CCATC 5 cut(s) 182, 387, 455, 604, 661
BceAI ACGGC 2 cut(s) 243, 809
BcoDI GTCTC 2 cut(s) 89, 186
BfaI CTAG 2 cut(s) 32, 546
BfmI CTRYAG 2 cut(s) 289, 603
BisI GCNGC 6 cut(s) 318, 736, 739, 742, 745, 748
BlsI GCNGC 6 cut(s) 319, 737, 740, 743, 746, 749
BmcAI AGTACT 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 650
BmsI GCATC 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 335
BplI GAGNNNNNCTC 2 cut(s) 86, 118
Bpu10I CCTNAGC 2 cut(s) 617, 768
BsaBI GATNNNNATC 2 cut(s) 75, 559
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 666
Bse1I ACTGG 1 cut(s) 756
Bse8I GATNNNNATC 2 cut(s) 75, 559
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 2 cut(s) 75, 559
BseLI CCNNNNNNNGG 2 cut(s) 378, 666
BseMII CTCAG 4 cut(s) 147, 237, 437, 608
BseNI ACTGG 1 cut(s) 756
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 6 cut(s) 329, 747, 750, 753, 756, 759
BshFI GGCC 2 cut(s) 230, 824
BsiHKAI GWGCWC 1 cut(s) 173
BsiWI CGTACG 2 cut(s) 21, 237
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 378, 666
BsmAI GTCTC 2 cut(s) 89, 186
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 2 cut(s) 230, 824
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 6 cut(s) 46, 76, 112, 410, 514, 554
BspANI GGCC 2 cut(s) 230, 824
BspCNI CTCAG 4 cut(s) 146, 238, 438, 609
BspLI GGNNCC 1 cut(s) 650
BspPI GGATC 2 cut(s) 71, 509
BspQI GCTCTTC 1 cut(s) 178
BsrI ACTGG 1 cut(s) 756
BssMI GATC 6 cut(s) 46, 76, 112, 410, 514, 554
Bst6I CTCTTC 2 cut(s) 178, 213
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 7 cut(s) 133, 246, 432, 446, 594, 617, 768
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 6 cut(s) 49, 79, 115, 413, 517, 557
BstMAI GTCTC 2 cut(s) 89, 186
BstMBI GATC 6 cut(s) 46, 76, 112, 410, 514, 554
BstMWI GCNNNNNNNGC 4 cut(s) 639, 741, 744, 747
BstNSI RCATGY 1 cut(s) 311
BstSFI CTRYAG 2 cut(s) 289, 603
BstV1I GCAGC 6 cut(s) 329, 747, 750, 753, 756, 759
BstV2I GAAGAC 1 cut(s) 335
BsuRI GGCC 2 cut(s) 230, 824
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 635
Csp6I GTAC 3 cut(s) 22, 238, 436
CviAII CATG 3 cut(s) 308, 580, 661
CviQI GTAC 3 cut(s) 22, 238, 436
DdeI CTNAG 7 cut(s) 133, 246, 432, 446, 594, 617, 768
DpnI GATC 6 cut(s) 48, 78, 114, 412, 516, 556
DpnII GATC 6 cut(s) 46, 76, 112, 410, 514, 554
Eam1104I CTCTTC 2 cut(s) 178, 213
EarI CTCTTC 2 cut(s) 178, 213
Ecl136II GAGCTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 173
FaeI CATG 3 cut(s) 311, 583, 664
FaiI YATR 8 cut(s) 82, 84, 126, 309, 526, 581, 662, 797
FaqI GGGAC 1 cut(s) 635
FatI CATG 3 cut(s) 307, 579, 660
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 6 cut(s) 318, 736, 739, 742, 745, 748
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 6 cut(s) 318, 736, 739, 742, 745, 748
FspBI CTAG 2 cut(s) 32, 546
GluI GCNGC 6 cut(s) 318, 736, 739, 742, 745, 748
HaeIII GGCC 2 cut(s) 230, 824
Hin1II CATG 3 cut(s) 311, 583, 664
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 3 cut(s) 17, 131, 448
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 2 cut(s) 168, 247
Hpy188III TCNNGA 1 cut(s) 628
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 393, 528
HpyCH4IV ACGT 2 cut(s) 24, 236
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 4 cut(s) 639, 741, 744, 747
HpyF3I CTNAG 7 cut(s) 133, 246, 432, 446, 594, 617, 768
HpySE526I ACGT 2 cut(s) 24, 236
Hsp92II CATG 3 cut(s) 311, 583, 664
Kzo9I GATC 6 cut(s) 46, 76, 112, 410, 514, 554
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 613
LpnPI CCDG 6 cut(s) 57, 77, 350, 619, 628, 769
Lsp1109I GCAGC 6 cut(s) 329, 747, 750, 753, 756, 759
LweI GCATC 1 cut(s) 251
MaeI CTAG 2 cut(s) 32, 546
MaeII ACGT 2 cut(s) 24, 236
MaeIII GTNAC 1 cut(s) 427
MalI GATC 6 cut(s) 48, 78, 114, 412, 516, 556
MboI GATC 6 cut(s) 46, 76, 112, 410, 514, 554
MfeI CAATTG 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 4 cut(s) 11, 53, 673, 717
MlyI GAGTC 3 cut(s) 11, 125, 457
MnlI CCTC 4 cut(s) 85, 241, 612, 639
MslI CAYNNNNRTG 1 cut(s) 144
MunI CAATTG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 639, 741, 744, 747
NdeI CATATG 1 cut(s) 82
NdeII GATC 6 cut(s) 46, 76, 112, 410, 514, 554
NlaIII CATG 3 cut(s) 311, 583, 664
NlaIV GGNNCC 1 cut(s) 650
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 1 cut(s) 311
PciI ACATGT 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 233
Pfl23II CGTACG 2 cut(s) 21, 237
PflMI CCANNNNNTGG 1 cut(s) 378
PkrI GCNGC 6 cut(s) 319, 737, 740, 743, 746, 749
PleI GAGTC 3 cut(s) 11, 125, 456
PpsI GAGTC 3 cut(s) 11, 125, 456
PscI ACATGT 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 173
PspLI CGTACG 2 cut(s) 21, 237
PspN4I GGNNCC 1 cut(s) 650
RsaI GTAC 3 cut(s) 23, 239, 437
RsaNI GTAC 3 cut(s) 22, 238, 436
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 178
SatI GCNGC 6 cut(s) 318, 736, 739, 742, 745, 748
Sau3AI GATC 6 cut(s) 46, 76, 112, 410, 514, 554
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 3 cut(s) 11, 125, 457
SduI GDGCHC 1 cut(s) 173
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 2 cut(s) 289, 603
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 4 cut(s) 11, 53, 673, 717
SspMI CTAG 2 cut(s) 32, 546
SstI GAGCTC 1 cut(s) 173
TaiI ACGT 2 cut(s) 27, 239
TaqI TCGA 3 cut(s) 391, 413, 656
TasI AATT 4 cut(s) 11, 53, 673, 717
TatI WGTACW 1 cut(s) 435
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 6 cut(s) 317, 735, 738, 741, 744, 747
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 5 cut(s) 99, 165, 471, 568, 705
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 378
XceI RCATGY 1 cut(s) 311
XspI CTAG 2 cut(s) 32, 546
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.