Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009716

Physical Location & Seq

Genomic Coordinates Forward (+)

19735466 .. 19736774

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATTATATTATTTAAACTTGAAAAATACCCCACAAAAGGCTCAAAGAATCTCAATTTTATTTATGAATATGCTTACTTACGAGCCTCTTATATATATCTGGGTACTTCTTGCTCTCTCTCTCCACAAACCCAGCTCAACAGAATACTTCCATTTCAATTTTTAACCCACCAAAAAATGGTTGCCCTAGAAAACCAGCAAAACCCAGCACCTCTGGAAGAAAAAGTAGAACAATTTCAAGACCAAGATCCCTACGAGGCAGAAGAAACCCTATCTCTCTGTGATCTTCCCACACACAGTGACTCGGCTCATTGGGAGGACTTCTCCAAAGATTACCAAAGCTCATCGTTCGACCGCTATGAAGACGATGACAACTTCTTCGAGTTCATCAGCGAGGAGTTCACCTCCTCGACGTACCCAGCAGAGAAGGACATAATCTTTTGCGGAAAACTTATACCCTACAACAAAGAAGCACCAAACTTTGCAGCGGAGAAATGTCATCAGAAGACTCAGAAGATCAAGAGCCAAGAAACCGTAAACAAAACGAAAACGAAAAGCTTTAGCTTTTCGAAGAAAAAAGGGTTTTTTTGGTCGTGGAGATCTTGCTCTTTCCGCAAGATAACCAAACCCTCAAACACGGCCAAGACTTCGAAGCCGAAAAATCCCACATCGGTAAGTTACAGAAAGTGTGAGGTGAATAAAGTGTCTATACTTTCCAGCACGCCGTCGAGGTCCAAGTGGTATCTTTTGATGTTTCAAATGGCGAGGTTTCCGACGGAGATGGAGCTGAGGGACATAAAAAACCGGCAGAGCCGACGGATGCCGTCGACCATGTTTAGGTCATTTGATGAAGGCGGTGATGAGAAGGGTAATAAGGGAAGGAGTGATAGTAAAAGCAGGGCAAAGGGGTTGTGGAGGCTGTTGAGGGCGGTGGGGTGTAGCAATCCACATGCAGACGCCGTCGTAAAGGCAGGGCTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

37.89

Weight (kDa)

9.22

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20060 FvH4_7g20070
prunus_persica	Prupe.2G217400_v2.0.a1
pyrus_communis	pycom07g17190
rosa_chinensis	RchiOBHm_Chr1g0364021
rosa_laevigata	RLG00000027525 RLG00000027526
rosa_multiflora	Rmu_sc0009677.1_g000006 Rmu_sc0009677.1_g000007
rosa_roxburghii	Rroxscaffold_4G00292730 Rroxscaffold_4G00292740
rosa_rugosa	Rorug01G0312100 Rorug01G0312200
rosa_samantha	Rh1AG320100 Rh1AG320200 Rh1BG283000 Rh1BG283200 Rh1CG299700 Rh1CG299800 Rh1DG314600 Rh1DG315000
rosa_wichuraiana	Rw1G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	827
AciI	CCGC	6 cut(s)	355, 444, 488, 613, 855, 929
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	957
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	106, 416
AfiI	CCNNNNNNNGG	3 cut(s)	38, 178, 837
AgsI	TTSAA	4 cut(s)	23, 158, 239, 758
AluBI	AGCT	5 cut(s)	136, 342, 558, 564, 787
AluI	AGCT	5 cut(s)	136, 342, 558, 564, 787
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	1 cut(s)	485
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	732
AsuHPI	GGTGA	3 cut(s)	394, 706, 869
AsuII	TTCGAA	2 cut(s)	569, 650
AvaII	GGWCC	1 cut(s)	732
BbsI	GAAGAC	2 cut(s)	369, 512
BbvCI	CCTCAGC	1 cut(s)	788
BbvI	GCAGC	1 cut(s)	497
BccI	CCATC	1 cut(s)	775
BceAI	ACGGC	4 cut(s)	654, 709, 808, 944
BfaI	CTAG	1 cut(s)	188
BglII	AGATCT	1 cut(s)	599
BisI	GCNGC	1 cut(s)	486
BlsI	GCNGC	1 cut(s)	487
Bme18I	GGWCC	1 cut(s)	732
BmgT120I	GGNCC	1 cut(s)	732
BmsI	GCATC	1 cut(s)	810
BpiI	GAAGAC	2 cut(s)	369, 512
BplI	GAGNNNNNCTC	4 cut(s)	308, 340, 389, 421
Bpu10I	CCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	2 cut(s)	569, 650
BsaHI	GRCGYC	1 cut(s)	957
BsaXI	ACNNNNNCTCC	2 cut(s)	874, 904
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 178, 837
Bse118I	RCCGGY	1 cut(s)	804
BseGI	GGATG	1 cut(s)	825
BseLI	CCNNNNNNNGG	3 cut(s)	38, 178, 837
BseMII	CTCAG	2 cut(s)	524, 779
BseRI	GAGGAG	2 cut(s)	397, 410
BseXI	GCAGC	1 cut(s)	497
BseYI	CCCAGC	3 cut(s)	132, 205, 418
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	1 cut(s)	641
BsiEI	CGRYCG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	805
BslFI	GGGAC	1 cut(s)	806
BslI	CCNNNNNNNGG	3 cut(s)	38, 178, 837
BsmFI	GGGAC	1 cut(s)	806
BsnI	GGCC	1 cut(s)	641
Bsp119I	TTCGAA	2 cut(s)	569, 650
Bsp143I	GATC	4 cut(s)	247, 283, 516, 599
BspACI	CCGC	6 cut(s)	355, 444, 488, 613, 855, 929
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	2 cut(s)	523, 780
BspPI	GGATC	1 cut(s)	242
BspT104I	TTCGAA	2 cut(s)	569, 650
BsrFI	RCCGGY	1 cut(s)	804
BssAI	RCCGGY	1 cut(s)	804
BssMI	GATC	4 cut(s)	247, 283, 516, 599
BssNI	GRCGYC	1 cut(s)	957
Bst4CI	ACNGT	2 cut(s)	299, 535
BstACI	GRCGYC	1 cut(s)	957
BstBI	TTCGAA	2 cut(s)	569, 650
BstC8I	GCNNGC	1 cut(s)	722
BstDEI	CTNAG	2 cut(s)	510, 788
BstF5I	GGATG	1 cut(s)	825
BstKTI	GATC	4 cut(s)	250, 286, 519, 602
BstMBI	GATC	4 cut(s)	247, 283, 516, 599
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	612
BstNSI	RCATGY	1 cut(s)	953
BstV1I	GCAGC	1 cut(s)	497
BstV2I	GAAGAC	2 cut(s)	369, 512
BstX2I	RGATCY	2 cut(s)	247, 599
BstYI	RGATCY	2 cut(s)	247, 599
BsuRI	GGCC	1 cut(s)	641
BtsCI	GGATG	1 cut(s)	825
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	722
Cfr10I	RCCGGY	1 cut(s)	804
Cfr13I	GGNCC	1 cut(s)	732
CseI	GACGC	1 cut(s)	965
Csp6I	GTAC	2 cut(s)	105, 415
CviAII	CATG	2 cut(s)	832, 950
CviQI	GTAC	2 cut(s)	105, 415
DdeI	CTNAG	2 cut(s)	510, 788
DpnI	GATC	4 cut(s)	249, 285, 518, 601
DpnII	GATC	4 cut(s)	247, 283, 516, 599
DraI	TTTAAA	1 cut(s)	16
DraIII	CACNNNGTG	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	732
FaeI	CATG	2 cut(s)	835, 953
FaqI	GGGAC	1 cut(s)	806
FatI	CATG	2 cut(s)	831, 949
FblI	GTMKAC	1 cut(s)	827
Fnu4HI	GCNGC	1 cut(s)	486
FokI	GGATG	1 cut(s)	832
Fsp4HI	GCNGC	1 cut(s)	486
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	1 cut(s)	486
GsaI	CCCAGC	3 cut(s)	136, 209, 422
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	1 cut(s)	805
HgaI	GACGC	1 cut(s)	965
Hin1I	GRCGYC	1 cut(s)	957
Hin1II	CATG	2 cut(s)	835, 953
HincII	GTYRAC	1 cut(s)	828
HindII	GTYRAC	1 cut(s)	828
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	3 cut(s)	49, 302, 508
HpaII	CCGG	1 cut(s)	805
HphI	GGTGA	3 cut(s)	394, 706, 869
Hpy166II	GTNNAC	3 cut(s)	402, 538, 828
Hpy188I	TCNGA	3 cut(s)	504, 513, 774
Hpy188III	TCNNGA	3 cut(s)	215, 239, 520
Hpy8I	GTNNAC	3 cut(s)	402, 538, 828
Hpy99I	CGWCG	6 cut(s)	415, 730, 778, 819, 829, 965
HpyAV	CCTTC	4 cut(s)	421, 845, 859, 873
HpyCH4III	ACNGT	2 cut(s)	299, 535
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	2 cut(s)	485, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	612
HpyF3I	CTNAG	2 cut(s)	510, 788
HpySE526I	ACGT	1 cut(s)	413
Hsp92I	GRCGYC	1 cut(s)	957
Hsp92II	CATG	2 cut(s)	835, 953
Kzo9I	GATC	4 cut(s)	247, 283, 516, 599
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	1 cut(s)	497
LweI	GCATC	1 cut(s)	810
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	299, 677
MalI	GATC	4 cut(s)	249, 285, 518, 601
MboI	GATC	4 cut(s)	247, 283, 516, 599
MboII	GAAGA	8 cut(s)	230, 275, 278, 370, 374, 517, 526, 583
MflI	RGATCY	2 cut(s)	247, 599
MluCI	AATT	3 cut(s)	55, 158, 233
MlyI	GAGTC	2 cut(s)	296, 502
MmeI	TCCRAC	1 cut(s)	797
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	2 cut(s)	15, 164
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	805
MwoI	GCNNNNNNNGC	1 cut(s)	612
NdeII	GATC	4 cut(s)	247, 283, 516, 599
NlaIII	CATG	2 cut(s)	835, 953
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	953
NspV	TTCGAA	2 cut(s)	569, 650
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	959
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	487
PleI	GAGTC	2 cut(s)	296, 502
PpsI	GAGTC	2 cut(s)	296, 502
PspFI	CCCAGC	3 cut(s)	132, 205, 418
PspPI	GGNCC	1 cut(s)	732
PsuI	RGATCY	2 cut(s)	247, 599
PsyI	GACNNNGTC	1 cut(s)	959
RsaI	GTAC	2 cut(s)	106, 416
RsaNI	GTAC	2 cut(s)	105, 415
SalI	GTCGAC	1 cut(s)	826
SaqAI	TTAA	2 cut(s)	15, 164
SatI	GCNGC	1 cut(s)	486
Sau3AI	GATC	4 cut(s)	247, 283, 516, 599
Sau96I	GGNCC	1 cut(s)	732
SchI	GAGTC	2 cut(s)	296, 502
SfaNI	GCATC	1 cut(s)	810
SfuI	TTCGAA	2 cut(s)	569, 650
SinI	GGWCC	1 cut(s)	732
Sse9I	AATT	3 cut(s)	55, 158, 233
SsiI	CCGC	6 cut(s)	355, 444, 488, 613, 855, 929
SspMI	CTAG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	299, 535
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	7 cut(s)	351, 381, 410, 569, 650, 728, 827
TasI	AATT	3 cut(s)	55, 158, 233
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	15, 164
Tru9I	TTAA	2 cut(s)	15, 164
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	81, 375, 376, 864
TspGWI	ACGGA	2 cut(s)	791, 832
TspRI	CASTG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	959
Van91I	CCANNNNNTGG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	732
XceI	RCATGY	1 cut(s)	953
XmiI	GTMKAC	1 cut(s)	827
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.