Rmu_sc0009677.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009677.1
OG0009716
Physical Location & Seq
Forward (+)
14420 .. 15259
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009677.1_g000006.1.cds

Sequence Viewer

Length: 840 bp
atggttgcccaattggactcgtacgttgccctagaagaaaacccagatcaccaattacagaatcagcaagatgatgatccatatgaagaagaggagacactctctctctgtgatcttcctacacacaaggactcagctcattgggatgacttctccaaagagtatcagagctcttcatttgatagagatgaagacaacttctttgagttcttcagtgaagagttcaaggcctcaacgtacgcatctgagaataaagacatcatcttctgtgggaagaagctcattccctacagcaaagaagaaccacatgttgttgcagcagagaagaagacgacccagaaaaacacagaaacgagcaacaaaagttccaccaagaaatggggattgtttcgatggagaaggtttaggagatcgaaacccaagcttgtcactaagtactccaagctgagtcaagtaaaagatggtagaagtaatactatttcatttcccacatcaaaaagctacaaaaggtgtgatccttcactatggaaagtgtcggttctgtctagcaaccgatcaaaatcaaagtggcatttgttcatgtttggaataactaagtttcctacagagatggagctgagggacatcaagagcaggcaaagcaggaggaacccatcgaccatgtttggggctaattgtgaagcaagtaatgaaataatgggaaagggtagaaaggaaattagcagtaatagtagcagcagcagcagcagcagcactagcagtattagagctaagggattgtggggtttgttgagagttatagggtgtagtagtcagcttccaaaggccgtccttctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

32.0

Weight (kDa)

9.12

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 378
AclWI GGATC 2 cut(s) 71, 509
AcuI CTGAAG 1 cut(s) 196
AfaI GTAC 3 cut(s) 23, 239, 437
AfiI CCNNNNNNNGG 2 cut(s) 378, 666
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 9 cut(s) 137, 171, 280, 424, 445, 501, 616, 770, 817
AluI AGCT 9 cut(s) 137, 171, 280, 424, 445, 501, 616, 770, 817
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 2 cut(s) 71, 509
AoxI GGCC 2 cut(s) 228, 825
ApeKI GCWGC 7 cut(s) 317, 735, 738, 741, 744, 747, 750
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AsuHPI GGTGA 1 cut(s) 41
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 2 cut(s) 198, 335
Bbv12I GWGCWC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 617
BbvI GCAGC 7 cut(s) 329, 747, 750, 753, 756, 759, 762
BccI CCATC 4 cut(s) 387, 455, 604, 661
BceAI ACGGC 1 cut(s) 812
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 3 cut(s) 32, 546, 756
BfmI CTRYAG 2 cut(s) 289, 603
BisI GCNGC 7 cut(s) 318, 736, 739, 742, 745, 748, 751
BlsI GCNGC 7 cut(s) 319, 737, 740, 743, 746, 749, 752
BmcAI AGTACT 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 650
BmsI GCATC 1 cut(s) 251
BpiI GAAGAC 2 cut(s) 198, 335
BplI GAGNNNNNCTC 2 cut(s) 86, 118
Bpu10I CCTNAGC 2 cut(s) 617, 771
BsaBI GATNNNNATC 2 cut(s) 75, 559
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 666
Bse8I GATNNNNATC 2 cut(s) 75, 559
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 2 cut(s) 75, 559
BseLI CCNNNNNNNGG 2 cut(s) 378, 666
BseMII CTCAG 4 cut(s) 147, 237, 437, 608
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 7 cut(s) 329, 747, 750, 753, 756, 759, 762
BshFI GGCC 2 cut(s) 230, 827
BsiHKAI GWGCWC 1 cut(s) 173
BsiWI CGTACG 2 cut(s) 21, 237
BslFI GGGAC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 378, 666
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 635
BsnI GGCC 2 cut(s) 230, 827
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 6 cut(s) 46, 76, 112, 410, 514, 554
BspANI GGCC 2 cut(s) 230, 827
BspCNI CTCAG 4 cut(s) 146, 238, 438, 609
BspLI GGNNCC 1 cut(s) 650
BspPI GGATC 2 cut(s) 71, 509
BspQI GCTCTTC 1 cut(s) 178
BssMI GATC 6 cut(s) 46, 76, 112, 410, 514, 554
Bst6I CTCTTC 3 cut(s) 84, 178, 213
BstC8I GCNNGC 1 cut(s) 635
BstDEI CTNAG 7 cut(s) 133, 246, 432, 446, 594, 617, 771
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 6 cut(s) 49, 79, 115, 413, 517, 557
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 6 cut(s) 46, 76, 112, 410, 514, 554
BstMWI GCNNNNNNNGC 6 cut(s) 639, 741, 744, 747, 750, 756
BstNSI RCATGY 1 cut(s) 311
BstSFI CTRYAG 2 cut(s) 289, 603
BstV1I GCAGC 7 cut(s) 329, 747, 750, 753, 756, 759, 762
BstV2I GAAGAC 2 cut(s) 198, 335
BsuRI GGCC 2 cut(s) 230, 827
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 635
Csp6I GTAC 3 cut(s) 22, 238, 436
CviAII CATG 3 cut(s) 308, 580, 661
CviQI GTAC 3 cut(s) 22, 238, 436
DdeI CTNAG 7 cut(s) 133, 246, 432, 446, 594, 617, 771
DpnI GATC 6 cut(s) 48, 78, 114, 412, 516, 556
DpnII GATC 6 cut(s) 46, 76, 112, 410, 514, 554
Eam1104I CTCTTC 3 cut(s) 84, 178, 213
EarI CTCTTC 3 cut(s) 84, 178, 213
Ecl136II GAGCTC 1 cut(s) 171
Eco147I AGGCCT 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 196
EcoICRI GAGCTC 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 173
FaeI CATG 3 cut(s) 311, 583, 664
FaiI YATR 7 cut(s) 82, 84, 309, 526, 581, 662, 800
FaqI GGGAC 1 cut(s) 635
FatI CATG 3 cut(s) 307, 579, 660
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 7 cut(s) 318, 736, 739, 742, 745, 748, 751
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 7 cut(s) 318, 736, 739, 742, 745, 748, 751
FspBI CTAG 3 cut(s) 32, 546, 756
GluI GCNGC 7 cut(s) 318, 736, 739, 742, 745, 748, 751
HaeIII GGCC 2 cut(s) 230, 827
Hin1II CATG 3 cut(s) 311, 583, 664
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 4 cut(s) 17, 61, 131, 448
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 168, 247
Hpy188III TCNNGA 1 cut(s) 628
HpyAV CCTTC 2 cut(s) 393, 528
HpyCH4IV ACGT 2 cut(s) 24, 236
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 6 cut(s) 639, 741, 744, 747, 750, 756
HpyF3I CTNAG 7 cut(s) 133, 246, 432, 446, 594, 617, 771
HpySE526I ACGT 2 cut(s) 24, 236
Hsp92II CATG 3 cut(s) 311, 583, 664
Kzo9I GATC 6 cut(s) 46, 76, 112, 410, 514, 554
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 613
LpnPI CCDG 4 cut(s) 57, 350, 619, 628
Lsp1109I GCAGC 7 cut(s) 329, 747, 750, 753, 756, 759, 762
LweI GCATC 1 cut(s) 251
MaeI CTAG 3 cut(s) 32, 546, 756
MaeII ACGT 2 cut(s) 24, 236
MaeIII GTNAC 1 cut(s) 427
MalI GATC 6 cut(s) 48, 78, 114, 412, 516, 556
MboI GATC 6 cut(s) 46, 76, 112, 410, 514, 554
MfeI CAATTG 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 4 cut(s) 11, 53, 673, 717
MlyI GAGTC 3 cut(s) 11, 125, 457
MnlI CCTC 4 cut(s) 85, 241, 612, 639
MslI CAYNNNNRTG 1 cut(s) 144
MunI CAATTG 1 cut(s) 11
MwoI GCNNNNNNNGC 6 cut(s) 639, 741, 744, 747, 750, 756
NdeI CATATG 1 cut(s) 82
NdeII GATC 6 cut(s) 46, 76, 112, 410, 514, 554
NlaIII CATG 3 cut(s) 311, 583, 664
NlaIV GGNNCC 1 cut(s) 650
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 1 cut(s) 311
PceI AGGCCT 1 cut(s) 230
PciI ACATGT 1 cut(s) 307
PciSI GCTCTTC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 61
Pfl23II CGTACG 2 cut(s) 21, 237
PflMI CCANNNNNTGG 1 cut(s) 378
PkrI GCNGC 7 cut(s) 319, 737, 740, 743, 746, 749, 752
PleI GAGTC 3 cut(s) 11, 125, 456
PpsI GAGTC 3 cut(s) 11, 125, 456
PscI ACATGT 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 173
PspLI CGTACG 2 cut(s) 21, 237
PspN4I GGNNCC 1 cut(s) 650
RsaI GTAC 3 cut(s) 23, 239, 437
RsaNI GTAC 3 cut(s) 22, 238, 436
RseI CAYNNNNRTG 1 cut(s) 144
SacI GAGCTC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 178
SatI GCNGC 7 cut(s) 318, 736, 739, 742, 745, 748, 751
Sau3AI GATC 6 cut(s) 46, 76, 112, 410, 514, 554
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 3 cut(s) 11, 125, 457
SduI GDGCHC 1 cut(s) 173
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 2 cut(s) 289, 603
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 4 cut(s) 11, 53, 673, 717
SseBI AGGCCT 1 cut(s) 230
SspMI CTAG 3 cut(s) 32, 546, 756
SstI GAGCTC 1 cut(s) 173
StuI AGGCCT 1 cut(s) 230
TaiI ACGT 2 cut(s) 27, 239
TaqI TCGA 3 cut(s) 391, 413, 656
TasI AATT 4 cut(s) 11, 53, 673, 717
TatI WGTACW 1 cut(s) 435
TfiI GAWTC 1 cut(s) 61
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 7 cut(s) 317, 735, 738, 741, 744, 747, 750
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 6 cut(s) 99, 165, 204, 471, 568, 705
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 1 cut(s) 378
XceI RCATGY 1 cut(s) 311
XspI CTAG 3 cut(s) 32, 546, 756
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.