Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009716

Physical Location & Seq

Genomic Coordinates Reverse (-)

12963510 .. 12964340

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTTGCCCAATTGGACTCGTACGTTGCCCTAGAAGAAAACCCAGATCACCAATTACAGAATCAGCAAGATGATGATCCATATGAAGCAGAGGAGACACTCTCTCTCTGTGATCTTCCTACACACAAGGACTCAGCTCATTGGGATGACTTCTCCAAAGAGTATCAGAGCTCTTCATTTGATAGAGATGAAGACAACTTCTTTGAGTTCTTCAGTGAAGAGTTCACGGCCTCAACGTACGCATCTGAGAATAAAGACATCATCTTCTGTGGGAAGAAGCTCATTCCCTACAGCAAAGAAGAACCACATGTTGTTGCAGCAGAGAAGAAGACGACCCAGAAAAACACAGAAACGAGCAACAAAAGTTCCACCAAGAAATGGGGATTGTTTCGATGGAGAAGGTTTAGGAGATCGAAACCCAAGCTTGTCACTAAGTACTCCAAGCTGAGTCAAGTAAAAGATGGTATAAATAATACTATTTCATTTCCCACATCAAAAAGCTACAAAAGGTGTGATCCTTCACTATGGAAAGTGTCGGTTCTGTCTAGCAACCGATCAAAATCAAAGTGGCATTTGTTCATGTTTGGAATAACTAAGTTTCCTACAGAGATGGAGCTGAGGGACATCAAGAGCAGGCAAAGCAGGAGGAACCCATCGACCATGTTTGGGGCTAATTGTGAAGCAAGTAATGAAATAATGGGAAAGGGTAGAAAGGAAATTAGCAGTAATAGTAGTAGCAGCAGCAGCAGCAGTCTTAGAGCTAAGGGACTGTGGGGTTTGTTGAGAGTTATAGGGTGTAGTAGTCAGCTTCCAAAGGCCGTCCTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

31.63

Weight (kDa)

9.03

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20060 FvH4_7g20070
prunus_persica	Prupe.2G217400_v2.0.a1
pyrus_communis	pycom07g17190
rosa_chinensis	RchiOBHm_Chr1g0364021
rosa_laevigata	RLG00000027525 RLG00000027526
rosa_multiflora	Rmu_sc0009677.1_g000006 Rmu_sc0009677.1_g000007
rosa_roxburghii	Rroxscaffold_4G00292730 Rroxscaffold_4G00292740
rosa_rugosa	Rorug01G0312100 Rorug01G0312200
rosa_samantha	Rh1AG320100 Rh1AG320200 Rh1BG283000 Rh1BG283200 Rh1CG299700 Rh1CG299800 Rh1DG314600 Rh1DG315000
rosa_wichuraiana	Rw1G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	378
AclWI	GGATC	2 cut(s)	71, 509
AcuI	CTGAAG	1 cut(s)	196
AfaI	GTAC	3 cut(s)	23, 239, 437
AfiI	CCNNNNNNNGG	2 cut(s)	378, 666
AflIII	ACRYGT	1 cut(s)	307
AluBI	AGCT	9 cut(s)	137, 171, 280, 424, 445, 501, 616, 761, 808
AluI	AGCT	9 cut(s)	137, 171, 280, 424, 445, 501, 616, 761, 808
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	2 cut(s)	71, 509
AoxI	GGCC	2 cut(s)	228, 816
ApeKI	GCWGC	5 cut(s)	317, 738, 741, 744, 747
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AsuHPI	GGTGA	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	198, 335
Bbv12I	GWGCWC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	617
BbvI	GCAGC	5 cut(s)	329, 750, 753, 756, 759
BccI	CCATC	4 cut(s)	387, 455, 604, 661
BceAI	ACGGC	2 cut(s)	243, 803
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	32, 546
BfmI	CTRYAG	2 cut(s)	289, 603
BisI	GCNGC	5 cut(s)	318, 739, 742, 745, 748
BlsI	GCNGC	5 cut(s)	319, 740, 743, 746, 749
BmcAI	AGTACT	1 cut(s)	437
BmiI	GGNNCC	1 cut(s)	650
BmsI	GCATC	1 cut(s)	251
BpiI	GAAGAC	2 cut(s)	198, 335
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
Bpu10I	CCTNAGC	2 cut(s)	617, 762
BsaBI	GATNNNNATC	2 cut(s)	75, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 666
Bse8I	GATNNNNATC	2 cut(s)	75, 559
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	2 cut(s)	75, 559
BseLI	CCNNNNNNNGG	2 cut(s)	378, 666
BseMII	CTCAG	4 cut(s)	147, 237, 437, 608
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	5 cut(s)	329, 750, 753, 756, 759
BshFI	GGCC	2 cut(s)	230, 818
BsiHKAI	GWGCWC	1 cut(s)	173
BsiWI	CGTACG	2 cut(s)	21, 237
BslFI	GGGAC	2 cut(s)	635, 780
BslI	CCNNNNNNNGG	2 cut(s)	378, 666
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	2 cut(s)	635, 780
BsnI	GGCC	2 cut(s)	230, 818
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	6 cut(s)	46, 76, 112, 410, 514, 554
BspANI	GGCC	2 cut(s)	230, 818
BspCNI	CTCAG	4 cut(s)	146, 238, 438, 609
BspLI	GGNNCC	1 cut(s)	650
BspPI	GGATC	2 cut(s)	71, 509
BspQI	GCTCTTC	1 cut(s)	178
BssMI	GATC	6 cut(s)	46, 76, 112, 410, 514, 554
Bst4CI	ACNGT	1 cut(s)	771
Bst6I	CTCTTC	2 cut(s)	178, 213
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	8 cut(s)	133, 246, 432, 446, 594, 617, 755, 762
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	6 cut(s)	49, 79, 115, 413, 517, 557
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	6 cut(s)	46, 76, 112, 410, 514, 554
BstMWI	GCNNNNNNNGC	3 cut(s)	639, 744, 747
BstNSI	RCATGY	1 cut(s)	311
BstSFI	CTRYAG	2 cut(s)	289, 603
BstV1I	GCAGC	5 cut(s)	329, 750, 753, 756, 759
BstV2I	GAAGAC	2 cut(s)	198, 335
BsuRI	GGCC	2 cut(s)	230, 818
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	635
Csp6I	GTAC	3 cut(s)	22, 238, 436
CviAII	CATG	3 cut(s)	308, 580, 661
CviQI	GTAC	3 cut(s)	22, 238, 436
DdeI	CTNAG	8 cut(s)	133, 246, 432, 446, 594, 617, 755, 762
DpnI	GATC	6 cut(s)	48, 78, 114, 412, 516, 556
DpnII	GATC	6 cut(s)	46, 76, 112, 410, 514, 554
Eam1104I	CTCTTC	2 cut(s)	178, 213
EarI	CTCTTC	2 cut(s)	178, 213
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	3 cut(s)	311, 583, 664
FaiI	YATR	8 cut(s)	82, 84, 309, 467, 526, 581, 662, 791
FaqI	GGGAC	2 cut(s)	635, 780
FatI	CATG	3 cut(s)	307, 579, 660
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	5 cut(s)	318, 739, 742, 745, 748
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	5 cut(s)	318, 739, 742, 745, 748
FspBI	CTAG	2 cut(s)	32, 546
GluI	GCNGC	5 cut(s)	318, 739, 742, 745, 748
HaeIII	GGCC	2 cut(s)	230, 818
Hin1II	CATG	3 cut(s)	311, 583, 664
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	4 cut(s)	17, 61, 131, 448
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	2 cut(s)	168, 247
Hpy188III	TCNNGA	1 cut(s)	628
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	393, 528
HpyCH4III	ACNGT	1 cut(s)	771
HpyCH4IV	ACGT	2 cut(s)	24, 236
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	639, 744, 747
HpyF3I	CTNAG	8 cut(s)	133, 246, 432, 446, 594, 617, 755, 762
HpySE526I	ACGT	2 cut(s)	24, 236
Hsp92II	CATG	3 cut(s)	311, 583, 664
Kzo9I	GATC	6 cut(s)	46, 76, 112, 410, 514, 554
LguI	GCTCTTC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	613
LpnPI	CCDG	4 cut(s)	57, 350, 619, 628
Lsp1109I	GCAGC	5 cut(s)	329, 750, 753, 756, 759
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	2 cut(s)	32, 546
MaeII	ACGT	2 cut(s)	24, 236
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	6 cut(s)	48, 78, 114, 412, 516, 556
MboI	GATC	6 cut(s)	46, 76, 112, 410, 514, 554
MfeI	CAATTG	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	4 cut(s)	11, 53, 673, 717
MlyI	GAGTC	3 cut(s)	11, 125, 457
MnlI	CCTC	4 cut(s)	85, 241, 612, 639
MslI	CAYNNNNRTG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	639, 744, 747
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	6 cut(s)	46, 76, 112, 410, 514, 554
NlaIII	CATG	3 cut(s)	311, 583, 664
NlaIV	GGNNCC	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	311
PciI	ACATGT	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	61
Pfl23II	CGTACG	2 cut(s)	21, 237
PflMI	CCANNNNNTGG	1 cut(s)	378
PkrI	GCNGC	5 cut(s)	319, 740, 743, 746, 749
PleI	GAGTC	3 cut(s)	11, 125, 456
PpsI	GAGTC	3 cut(s)	11, 125, 456
PscI	ACATGT	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	173
PspLI	CGTACG	2 cut(s)	21, 237
PspN4I	GGNNCC	1 cut(s)	650
RsaI	GTAC	3 cut(s)	23, 239, 437
RsaNI	GTAC	3 cut(s)	22, 238, 436
RseI	CAYNNNNRTG	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	178
SatI	GCNGC	5 cut(s)	318, 739, 742, 745, 748
Sau3AI	GATC	6 cut(s)	46, 76, 112, 410, 514, 554
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	3 cut(s)	11, 125, 457
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	2 cut(s)	289, 603
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	4 cut(s)	11, 53, 673, 717
SspMI	CTAG	2 cut(s)	32, 546
SstI	GAGCTC	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	771
TaiI	ACGT	2 cut(s)	27, 239
TaqI	TCGA	3 cut(s)	391, 413, 656
TasI	AATT	4 cut(s)	11, 53, 673, 717
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	61
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	5 cut(s)	317, 738, 741, 744, 747
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	6 cut(s)	99, 165, 204, 471, 568, 705
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	378
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	2 cut(s)	32, 546
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.