Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009716

Physical Location & Seq

Genomic Coordinates Forward (+)

16390400 .. 16391667

Gene Structure 1268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGTTGCCCAGTTAGACTCGTACCTTGCCTCAGAAGAAAACCCAGATCATCACCAGTTACAGAATCAACAAGATGATCCATATGAAGCAGAAGAAACACTCTCTCTTTGTGATCTTCCTACGTACAGTGACTCAGCTAATTGGAACGACTTCTCCAAAGATTACCAGAGCTCCTCCTTTGATCGAGATGAAGACAACTTCTTTGAGTTCTTCAGCGAAGAGTTTACAGCTTCAACGTACTCAACTGGAAACAAAGACATCATTTTCTGTGGGAAGCTCATTCCCTACAACAAAGAAGCTCCATATGTTGCTGCAGCAGAGAAGAAAACTCAGAAGAATCAAGAACCCGGCAACAAAAATCTCAACAGTTCCACAAAGAAATGGAGTCTTTTCCGGTGGAGAAGGTTAAGGGGATCGAAACACAAGGTAGTCACTAGACCTAGTCAATGTAAAGAAGCTAGAAGTGCTAGTGCCACTAATACGATTTCGTTTCCTGCATCAAAGAGTCACAGAAGGTGTGATGTTCCACTAGGGAAGGTGTCGATTCTTTCGAGTAATCGATCAAAATCGAAGTGGTATTTGTTCATGTTTGGAATGGCGAGGTTTCCCACAGAGATGGAGCTGAGAGACATTAAGAGTAGGCAAAGCAGGAGGAGCCCGTCGACCATGTTTGGGGCTAATAGTGAAGCAAGTGATGAATTAATGGGGAAGGGAAACAAAGAAATTAGCGACAGTAGTAATAGAGCTAAGGGGTTGTGGGGGTTATTGAGAGCTATTGGTTGTCGTAGTCAGCATCCAAACGCAGTCGTGAAAAGCAGCTTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

31.25

Weight (kDa)

8.97

Isoelectric Point (pI)

58.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009716)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20060 FvH4_7g20070
prunus_persica	Prupe.2G217400_v2.0.a1
pyrus_communis	pycom07g17190
rosa_chinensis	RchiOBHm_Chr1g0364021
rosa_laevigata	RLG00000027525 RLG00000027526
rosa_multiflora	Rmu_sc0009677.1_g000006 Rmu_sc0009677.1_g000007
rosa_roxburghii	Rroxscaffold_4G00292730 Rroxscaffold_4G00292740
rosa_rugosa	Rorug01G0312100 Rorug01G0312200
rosa_samantha	Rh1AG320100 Rh1AG320200 Rh1BG283000 Rh1BG283200 Rh1CG299700 Rh1CG299800 Rh1DG314600 Rh1DG315000
rosa_wichuraiana	Rw1G028380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	662
AclWI	GGATC	2 cut(s)	71, 421
AcuI	CTGAAG	1 cut(s)	196
AfaI	GTAC	3 cut(s)	23, 125, 239
AfiI	CCNNNNNNNGG	1 cut(s)	672
AgsI	TTSAA	1 cut(s)	234
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	621
AlwI	GGATC	2 cut(s)	71, 421
ApeKI	GCWGC	3 cut(s)	311, 314, 816
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	701
Asp700I	GAANNNNTTC	1 cut(s)	149
AsuC2I	CCSGG	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	173, 659
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	298, 326
BccI	CCATC	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	621
BfaI	CTAG	5 cut(s)	435, 441, 459, 468, 530
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	3 cut(s)	312, 315, 817
BlsI	GCNGC	3 cut(s)	313, 316, 818
Bme1390I	CCNGG	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	656
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	4
BmsI	GCATC	2 cut(s)	506, 802
BmuI	ACTGGG	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	747
BpuMI	CCSGG	1 cut(s)	348
Bsa29I	ATCGAT	1 cut(s)	559
BsaAI	YACGTR	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	393
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 155, 167, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	672
Bse1I	ACTGG	3 cut(s)	10, 55, 250
Bse8I	GATNNNNATC	1 cut(s)	565
BseCI	ATCGAT	1 cut(s)	559
BseGI	GGATG	1 cut(s)	793
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	1 cut(s)	672
BseMII	CTCAG	4 cut(s)	45, 147, 344, 614
BseNI	ACTGG	3 cut(s)	10, 55, 250
BseRI	GAGGAG	2 cut(s)	163, 667
BseXI	GCAGC	2 cut(s)	298, 326
BshVI	ATCGAT	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	348, 394
BslI	CCNNNNNNNGG	1 cut(s)	672
BsmAI	GTCTC	1 cut(s)	621
Bsp1286I	GDGCHC	2 cut(s)	173, 659
Bsp143I	GATC	6 cut(s)	46, 76, 112, 181, 413, 560
BspCNI	CTCAG	4 cut(s)	44, 146, 343, 615
BspDI	ATCGAT	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	656
BspMAI	CTGCAG	1 cut(s)	316
BspPI	GGATC	2 cut(s)	71, 421
BsrI	ACTGG	3 cut(s)	10, 55, 250
BssMI	GATC	6 cut(s)	46, 76, 112, 181, 413, 560
Bst4CI	ACNGT	3 cut(s)	128, 368, 734
Bst6I	CTCTTC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	123
BstDEI	CTNAG	5 cut(s)	31, 133, 330, 623, 747
BstF5I	GGATG	1 cut(s)	793
BstKTI	GATC	6 cut(s)	49, 79, 115, 184, 416, 563
BstMAI	GTCTC	1 cut(s)	621
BstMBI	GATC	6 cut(s)	46, 76, 112, 181, 413, 560
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 654
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	312
BstSNI	TACGTA	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	298, 326
BstV2I	GAAGAC	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	616
Bsu15I	ATCGAT	1 cut(s)	559
BsuTUI	ATCGAT	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	793
BtsIMutI	CAGTG	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	559
Csp6I	GTAC	3 cut(s)	22, 124, 238
CviAII	CATG	2 cut(s)	586, 667
CviQI	GTAC	3 cut(s)	22, 124, 238
DdeI	CTNAG	5 cut(s)	31, 133, 330, 623, 747
DpnI	GATC	6 cut(s)	48, 78, 114, 183, 415, 562
DpnII	GATC	6 cut(s)	46, 76, 112, 181, 413, 560
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	171
Eco105I	TACGTA	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	173, 659
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	173, 659
FaeI	CATG	2 cut(s)	589, 670
FaiI	YATR	6 cut(s)	82, 84, 304, 306, 587, 668
FatI	CATG	2 cut(s)	585, 666
FauNDI	CATATG	2 cut(s)	82, 304
FblI	GTMKAC	1 cut(s)	662
Fnu4HI	GCNGC	3 cut(s)	312, 315, 817
FokI	GGATG	1 cut(s)	780
FriOI	GRGCYC	2 cut(s)	173, 659
Fsp4HI	GCNGC	3 cut(s)	312, 315, 817
FspBI	CTAG	5 cut(s)	435, 441, 459, 468, 530
GluI	GCNGC	3 cut(s)	312, 315, 817
HapII	CCGG	2 cut(s)	348, 394
Hin1II	CATG	2 cut(s)	589, 670
HincII	GTYRAC	1 cut(s)	663
HindII	GTYRAC	1 cut(s)	663
HinfI	GANTC	7 cut(s)	17, 64, 131, 337, 385, 505, 544
HpaII	CCGG	2 cut(s)	348, 394
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	225, 663
Hpy188I	TCNGA	2 cut(s)	34, 333
Hpy188III	TCNNGA	3 cut(s)	185, 341, 808
Hpy8I	GTNNAC	2 cut(s)	225, 663
Hpy99I	CGWCG	1 cut(s)	664
HpyAV	CCTTC	4 cut(s)	396, 507, 529, 703
HpyCH4III	ACNGT	3 cut(s)	128, 368, 734
HpyCH4IV	ACGT	2 cut(s)	122, 236
HpyCH4V	TGCA	2 cut(s)	314, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 654
HpyF3I	CTNAG	5 cut(s)	31, 133, 330, 623, 747
HpySE526I	ACGT	2 cut(s)	122, 236
Hsp92II	CATG	2 cut(s)	589, 670
Kzo9I	GATC	6 cut(s)	46, 76, 112, 181, 413, 560
LmnI	GCTCC	4 cut(s)	176, 304, 619, 654
LpnPI	CCDG	9 cut(s)	23, 57, 68, 179, 231, 361, 407, 507, 634
Lsp1109I	GCAGC	2 cut(s)	298, 326
LweI	GCATC	2 cut(s)	506, 802
MaeI	CTAG	5 cut(s)	435, 441, 459, 468, 530
MaeII	ACGT	2 cut(s)	122, 236
MaeIII	GTNAC	4 cut(s)	57, 128, 430, 506
MalI	GATC	6 cut(s)	48, 78, 114, 183, 415, 562
MboI	GATC	6 cut(s)	46, 76, 112, 181, 413, 560
MboII	GAAGA	8 cut(s)	47, 104, 107, 202, 203, 230, 334, 346
MhlI	GDGCHC	2 cut(s)	173, 659
MluCI	AATT	3 cut(s)	139, 698, 723
MlyI	GAGTC	4 cut(s)	11, 125, 394, 514
MnlI	CCTC	4 cut(s)	40, 184, 594, 645
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	3 cut(s)	407, 633, 701
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	2 cut(s)	348, 394
MspR9I	CCNGG	1 cut(s)	348
MwoI	GCNNNNNNNGC	2 cut(s)	464, 654
NciI	CCSGG	1 cut(s)	348
NdeI	CATATG	2 cut(s)	82, 304
NdeII	GATC	6 cut(s)	46, 76, 112, 181, 413, 560
NlaIII	CATG	2 cut(s)	589, 670
NlaIV	GGNNCC	1 cut(s)	656
NmuCI	GTSAC	3 cut(s)	128, 430, 506
PcsI	WCGNNNNNNNCGW	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	64, 337, 544
PflFI	GACNNNGTC	1 cut(s)	441
PkrI	GCNGC	3 cut(s)	313, 316, 818
PleI	GAGTC	4 cut(s)	11, 125, 393, 513
PpsI	GAGTC	4 cut(s)	11, 125, 393, 513
Ppu21I	YACGTR	1 cut(s)	123
PshBI	ATTAAT	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	441
RsaI	GTAC	3 cut(s)	23, 125, 239
RsaNI	GTAC	3 cut(s)	22, 124, 238
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	1 cut(s)	173
SalI	GTCGAC	1 cut(s)	661
SaqAI	TTAA	3 cut(s)	407, 633, 701
SatI	GCNGC	3 cut(s)	312, 315, 817
Sau3AI	GATC	6 cut(s)	46, 76, 112, 181, 413, 560
SchI	GAGTC	4 cut(s)	11, 125, 394, 514
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	2 cut(s)	173, 659
SfaNI	GCATC	2 cut(s)	506, 802
SfcI	CTRYAG	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	614
SnaBI	TACGTA	1 cut(s)	123
Sse9I	AATT	3 cut(s)	139, 698, 723
SspMI	CTAG	5 cut(s)	435, 441, 459, 468, 530
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	3 cut(s)	128, 368, 734
TaiI	ACGT	2 cut(s)	125, 239
TaqI	TCGA	7 cut(s)	184, 416, 542, 551, 559, 569, 662
TasI	AATT	3 cut(s)	139, 698, 723
TfiI	GAWTC	3 cut(s)	64, 337, 544
Tru1I	TTAA	3 cut(s)	407, 633, 701
Tru9I	TTAA	3 cut(s)	407, 633, 701
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	3 cut(s)	128, 430, 506
TseI	GCWGC	3 cut(s)	311, 314, 816
Tsp45I	GTSAC	3 cut(s)	128, 430, 506
TspDTI	ATGAA	4 cut(s)	99, 204, 574, 711
TspRI	CASTG	1 cut(s)	133
Tth111I	GACNNNGTC	1 cut(s)	441
VspI	ATTAAT	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	662
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	5 cut(s)	435, 441, 459, 468, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.