FvH4_7g22821

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012652
Physical Location & Seq
Reverse (-)
17938989 .. 17940353
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22821.t1

Sequence Viewer

Length: 1365 bp
ATGGAGAGTAGGAACCACCACTTCCTTGTCATCTCCTGCGCAGCACAAGGCCATCTGAACCCTAGTCTCCAACTAGCTAAGCGGCTTATAGACATTGGAAGCTCACATGTCACCTTTGTCACCAACATCCATGGCCTCACTCAAATCAAATCCTTACCTTCTCTAGAAGGCTTATCATTTGCTTCCTTCTCCGATGGCTTTGACGACGGAGTCCACCCTGCCAATGACCCGGAGCACATCATGTCAGAGCTGAAGCGGGCAGGATCAGAATCACTCACTGCTTTGATTGAGAAGATCTCCACATCCGATGAGCATGGCCCTATCACCTTTCTAATCTACACCGTCCTCCTCCCTTGGGCTGCTGAAGTTGCCAGTAGTTTTGGTATAGCTTCTGCCTTCCTTTGCATAACATCTGCCACTTCCTTTGCAATTTGCGGCCATTACTTCAAAGATTACTATAAGAGTCAGAGTAGCCTTCCATTTCCAAGTTGCATAACAATAGATGGTTTGCCACCTTTTGCTTCTGATGAGCTACCTTCCTATCTCCTACCCACCAGTCCACATGTTTCGATCCTCCCTACCTTTCAAGAACACTACCAAATCTGGGAAAAGAGCCCCAACTCATGTGTGCTGGTTAACACCTTTGATGGGTTAGAAGAGGCAGCAATTAGAGATATGAGAGCTCATATGAATCTGATTACAGTTGGTCCCTTGATTCGATCTGCCGAAGTTTGTTGTGACTTGTTTGACAAGTCTGGGGACGATTACCTTCAGTGGCTGGACACAAAAGCAGATTCTTCTGTGGTTTATGTATCGTTTGGGAGCATGGTGGTGTTGAGGAGTGGTCAGATGGAAGAGATGCTACATGGTTTGGTTGACAGTGGACTCCCAGTCCTATGGGTCATTCGCAAGTCAGGAAATGAAGGAGATCAAGAAACTGAAAATCTGATAAACAATACACTAAAGAAGGAACAAGGGTTAATAGTGCCATGGTGTTCACAAGTAGAGGTGCTGAGCCACAAGTCAGTTGGGTGTTGTGTGTCGCATTGTGGGTGGAACTCTACTATAGAAAGCTTGGCCGCTGGTGTTCCGGTTGTCGGGTGCCCTCATTTTGCAGACCAGACTACAAATGCCAAGCTGGTTGAGGAGCTGTGGGGGAGTGGAGTTAGAGCCAGAGCGAATGAAGAGGGAGTGATCGAGCGTGCAGAGATTAAGAGGTGTTTGGAAGTGGTGATGGGGGATGGAGTGAGAGGGGAGGAGATGAGAAGGAATGCTCAGAAATGGAAAAGTTTGGCTATGAAGGCTGTGAATGAAAGTGGTTCTTCGGATGATAATCTCAGGAACTTCGTCAGAAGTTTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

455

Amino Acids

49.71

Weight (kDa)

5.2

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 244 - 415 2.9e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
Acc16I TGCGCA 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 1101
AciI CCGC 4 cut(s) 82, 256, 435, 1080
AclWI GGATC 2 cut(s) 271, 565
AcoI YGGCCR 2 cut(s) 436, 1077
AcuI CTGAAG 3 cut(s) 272, 384, 755
AfiI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1097
AflIII ACRYGT 2 cut(s) 106, 562
AgsI TTSAA 2 cut(s) 448, 587
AhdI GACNNNNNGTC 1 cut(s) 890
AluBI AGCT 9 cut(s) 77, 102, 250, 389, 532, 683, 1074, 1138, 1150
AluI AGCT 9 cut(s) 77, 102, 250, 389, 532, 683, 1074, 1138, 1150
Alw21I GWGCWC 2 cut(s) 237, 685
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 271, 565
AlwNI CAGNNNCTG 1 cut(s) 778
AoxI GGCC 6 cut(s) 49, 133, 316, 436, 1077, 1359
ApeKI GCWGC 3 cut(s) 41, 359, 662
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 317, 707
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 4 cut(s) 103, 112, 316, 1243
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 1106
BanI GGYRCC 1 cut(s) 1101
BanII GRGCYC 2 cut(s) 617, 685
BarI GAAGNNNNNNTAC 2 cut(s) 846, 878
Bbv12I GWGCWC 2 cut(s) 237, 685
BbvI GCAGC 3 cut(s) 53, 346, 674
BccI CCATC 7 cut(s) 60, 188, 497, 641, 844, 1228, 1235
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 63, 74, 164
BfmI CTRYAG 1 cut(s) 1065
BglII AGATCT 1 cut(s) 294
BisI GCNGC 6 cut(s) 42, 83, 360, 436, 663, 1080
BlpI GCTNAGC 2 cut(s) 78, 1013
BlsI GCNGC 6 cut(s) 43, 84, 361, 437, 664, 1081
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 1 cut(s) 707
BmeRI GACNNNNNGTC 1 cut(s) 890
BmgT120I GGNCC 2 cut(s) 317, 707
BmiI GGNNCC 3 cut(s) 14, 709, 1103
BmrFI CCNGG 1 cut(s) 230
BmrI ACTGGG 1 cut(s) 884
BmsI GCATC 1 cut(s) 849
BmuI ACTGGG 1 cut(s) 884
BplI GAGNNNNNCTC 2 cut(s) 281, 313
Bpu1102I GCTNAGC 2 cut(s) 78, 1013
BpuMI CCSGG 1 cut(s) 230
BsaBI GATNNNNATC 2 cut(s) 268, 1332
BsaJI CCNNGG 3 cut(s) 130, 353, 989
BsaWI WCCGGW 1 cut(s) 1090
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1097
Bse1I ACTGG 3 cut(s) 372, 555, 890
Bse8I GATNNNNATC 2 cut(s) 268, 1332
BseDI CCNNGG 3 cut(s) 130, 353, 989
BseGI GGATG 4 cut(s) 126, 302, 1246, 1333
BseJI GATNNNNATC 2 cut(s) 268, 1332
BseLI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1097
BseMII CTCAG 3 cut(s) 1004, 1289, 1351
BseNI ACTGG 3 cut(s) 372, 555, 890
BseRI GAGGAG 4 cut(s) 338, 853, 1160, 1271
BseSI GKGCMC 1 cut(s) 1106
BseXI GCAGC 3 cut(s) 53, 346, 674
BsgI GTGCAG 1 cut(s) 1224
BshFI GGCC 6 cut(s) 51, 135, 318, 438, 1079, 1361
BshNI GGYRCC 1 cut(s) 1101
BsiHKAI GWGCWC 2 cut(s) 237, 685
BsiSI CCGG 2 cut(s) 230, 1091
BslFI GGGAC 2 cut(s) 693, 773
BslI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1097
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 2 cut(s) 693, 773
BsmI GAATGC 1 cut(s) 1276
BsnI GGCC 6 cut(s) 51, 135, 318, 438, 1079, 1361
Bsp1286I GDGCHC 4 cut(s) 237, 617, 685, 1106
Bsp143I GATC 6 cut(s) 263, 294, 570, 719, 928, 1194
Bsp1720I GCTNAGC 2 cut(s) 78, 1013
Bsp19I CCATGG 2 cut(s) 130, 989
BspACI CCGC 4 cut(s) 82, 256, 435, 1080
BspANI GGCC 6 cut(s) 51, 135, 318, 438, 1079, 1361
BspCNI CTCAG 3 cut(s) 1005, 1288, 1350
BspLI GGNNCC 3 cut(s) 14, 709, 1103
BspPI GGATC 2 cut(s) 271, 565
BspT107I GGYRCC 1 cut(s) 1101
BsrI ACTGG 3 cut(s) 372, 555, 890
BssECI CCNNGG 3 cut(s) 130, 353, 989
BssMI GATC 6 cut(s) 263, 294, 570, 719, 928, 1194
BssT1I CCWWGG 3 cut(s) 130, 353, 989
Bst4CI ACNGT 3 cut(s) 343, 703, 881
Bst6I CTCTTC 3 cut(s) 651, 849, 1179
BstC8I GCNNGC 2 cut(s) 258, 1203
BstDEI CTNAG 4 cut(s) 78, 1013, 1275, 1337
BstDSI CCRYGG 2 cut(s) 130, 989
BstF5I GGATG 4 cut(s) 126, 302, 1246, 1333
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 6 cut(s) 266, 297, 573, 722, 931, 1197
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 6 cut(s) 263, 294, 570, 719, 928, 1194
BstMWI GCNNNNNNNGC 2 cut(s) 368, 1301
BstNSI RCATGY 2 cut(s) 110, 566
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 1065
BstSLI GKGCMC 1 cut(s) 1106
BstV1I GCAGC 3 cut(s) 53, 346, 674
BstX2I RGATCY 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 897
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 6 cut(s) 51, 135, 318, 438, 1079, 1361
BtgI CCRYGG 2 cut(s) 130, 989
BtsCI GGATG 4 cut(s) 126, 302, 1246, 1333
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 276, 779, 886
Cac8I GCNNGC 2 cut(s) 258, 1203
CaiI CAGNNNCTG 1 cut(s) 778
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 317, 707
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 9 cut(s) 107, 131, 241, 314, 563, 624, 826, 866, 990
DdeI CTNAG 4 cut(s) 78, 1013, 1275, 1337
DpnI GATC 6 cut(s) 265, 296, 572, 721, 930, 1196
DpnII GATC 6 cut(s) 263, 294, 570, 719, 928, 1194
DrdI GACNNNNNNGTC 1 cut(s) 209
DriI GACNNNNNGTC 1 cut(s) 890
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 2 cut(s) 436, 1077
Eam1104I CTCTTC 3 cut(s) 651, 849, 1179
Eam1105I GACNNNNNGTC 1 cut(s) 890
EarI CTCTTC 3 cut(s) 651, 849, 1179
Ecl136II GAGCTC 1 cut(s) 683
Eco130I CCWWGG 3 cut(s) 130, 353, 989
Eco24I GRGCYC 2 cut(s) 617, 685
Eco47I GGWCC 1 cut(s) 707
Eco53kI GAGCTC 1 cut(s) 683
Eco57I CTGAAG 3 cut(s) 272, 384, 755
EcoICRI GAGCTC 1 cut(s) 683
EcoT14I CCWWGG 3 cut(s) 130, 353, 989
EcoT38I GRGCYC 2 cut(s) 617, 685
ErhI CCWWGG 3 cut(s) 130, 353, 989
FaeI CATG 9 cut(s) 110, 134, 244, 317, 566, 627, 829, 869, 993
FalI AAGNNNNNCTT 2 cut(s) 1306, 1338
FaqI GGGAC 2 cut(s) 693, 773
FatI CATG 9 cut(s) 106, 130, 240, 313, 562, 623, 825, 865, 989
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 687
Fnu4HI GCNGC 6 cut(s) 42, 83, 360, 436, 663, 1080
FokI GGATG 4 cut(s) 113, 289, 1253, 1340
FriOI GRGCYC 2 cut(s) 617, 685
Fsp4HI GCNGC 6 cut(s) 42, 83, 360, 436, 663, 1080
FspBI CTAG 3 cut(s) 63, 74, 164
FspI TGCGCA 1 cut(s) 40
GlaI GCGC 1 cut(s) 40
GluI GCNGC 6 cut(s) 42, 83, 360, 436, 663, 1080
HaeIII GGCC 6 cut(s) 51, 135, 318, 438, 1079, 1361
HapII CCGG 2 cut(s) 230, 1091
HhaI GCGC 1 cut(s) 41
Hin1II CATG 9 cut(s) 110, 134, 244, 317, 566, 627, 829, 869, 993
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 2 cut(s) 637, 877
HindII GTYRAC 2 cut(s) 637, 877
HindIII AAGCTT 1 cut(s) 1072
HinfI GANTC 7 cut(s) 210, 269, 463, 691, 715, 794, 885
HpaI GTTAAC 1 cut(s) 637
HpaII CCGG 2 cut(s) 230, 1091
HphI GGTGA 4 cut(s) 103, 112, 316, 1243
Hpy166II GTNNAC 6 cut(s) 214, 560, 637, 877, 884, 998
Hpy188III TCNNGA 5 cut(s) 164, 587, 915, 932, 1339
Hpy8I GTNNAC 6 cut(s) 214, 560, 637, 877, 884, 998
Hpy99I CGWCG 1 cut(s) 209
HpyCH4III ACNGT 3 cut(s) 343, 703, 881
HpyCH4V TGCA 5 cut(s) 405, 428, 492, 1115, 1205
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 1301
HpyF3I CTNAG 4 cut(s) 78, 1013, 1275, 1337
Hsp92II CATG 9 cut(s) 110, 134, 244, 317, 566, 627, 829, 869, 993
HspAI GCGC 1 cut(s) 39
KspAI GTTAAC 1 cut(s) 637
Kzo9I GATC 6 cut(s) 263, 294, 570, 719, 928, 1194
LmnI GCTCC 3 cut(s) 232, 822, 1147
Lsp1109I GCAGC 3 cut(s) 53, 346, 674
LweI GCATC 1 cut(s) 849
MaeI CTAG 3 cut(s) 63, 74, 164
MaeIII GTNAC 3 cut(s) 109, 118, 737
MalI GATC 6 cut(s) 265, 296, 572, 721, 930, 1196
MboI GATC 6 cut(s) 263, 294, 570, 719, 928, 1194
MboII GAAGA 6 cut(s) 304, 668, 789, 866, 1196, 1314
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 4 cut(s) 237, 617, 685, 1106
MluCI AATT 2 cut(s) 429, 666
MlyI GAGTC 3 cut(s) 219, 472, 879
MmeI TCCRAC 1 cut(s) 94
MseI TTAA 3 cut(s) 636, 980, 1212
MslI CAYNNNNRTG 1 cut(s) 830
MspA1I CMGCKG 1 cut(s) 1082
MspI CCGG 2 cut(s) 230, 1091
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 1276
MwoI GCNNNNNNNGC 2 cut(s) 368, 1301
NciI CCSGG 1 cut(s) 230
NcoI CCATGG 2 cut(s) 130, 989
NdeI CATATG 1 cut(s) 687
NdeII GATC 6 cut(s) 263, 294, 570, 719, 928, 1194
NlaIII CATG 9 cut(s) 110, 134, 244, 317, 566, 627, 829, 869, 993
NlaIV GGNNCC 3 cut(s) 14, 709, 1103
NmuCI GTSAC 3 cut(s) 109, 118, 737
NsbI TGCGCA 1 cut(s) 40
NspI RCATGY 2 cut(s) 110, 566
PciI ACATGT 2 cut(s) 106, 562
PctI GAATGC 1 cut(s) 1276
PfeI GAWTC 4 cut(s) 269, 691, 715, 794
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 6 cut(s) 43, 84, 361, 437, 664, 1081
PleI GAGTC 3 cut(s) 218, 471, 879
PpsI GAGTC 3 cut(s) 218, 471, 879
PscI ACATGT 2 cut(s) 106, 562
Psp124BI GAGCTC 1 cut(s) 685
PspN4I GGNNCC 3 cut(s) 14, 709, 1103
PspPI GGNCC 2 cut(s) 317, 707
PstNI CAGNNNCTG 1 cut(s) 778
PsuI RGATCY 1 cut(s) 294
PsyI GACNNNGTC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 830
SacI GAGCTC 1 cut(s) 685
SaqAI TTAA 3 cut(s) 636, 980, 1212
SatI GCNGC 6 cut(s) 42, 83, 360, 436, 663, 1080
Sau3AI GATC 6 cut(s) 263, 294, 570, 719, 928, 1194
Sau96I GGNCC 2 cut(s) 317, 707
SchI GAGTC 3 cut(s) 219, 472, 879
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 4 cut(s) 237, 617, 685, 1106
SfaNI GCATC 1 cut(s) 849
SfcI CTRYAG 1 cut(s) 1065
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 1 cut(s) 830
Sse9I AATT 2 cut(s) 429, 666
SsiI CCGC 4 cut(s) 82, 256, 435, 1080
SspMI CTAG 3 cut(s) 63, 74, 164
SstI GAGCTC 1 cut(s) 685
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 3 cut(s) 130, 353, 989
TaaI ACNGT 3 cut(s) 343, 703, 881
TaqI TCGA 3 cut(s) 569, 718, 1197
TasI AATT 2 cut(s) 429, 666
TauI GCSGC 3 cut(s) 85, 438, 1082
TfiI GAWTC 4 cut(s) 269, 691, 715, 794
Tru1I TTAA 3 cut(s) 636, 980, 1212
Tru9I TTAA 3 cut(s) 636, 980, 1212
TscAI CASTG 3 cut(s) 283, 779, 886
TseFI GTSAC 3 cut(s) 109, 118, 737
TseI GCWGC 3 cut(s) 41, 359, 662
Tsp45I GTSAC 3 cut(s) 109, 118, 737
TspDTI ATGAA 5 cut(s) 704, 936, 1197, 1313, 1326
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 3 cut(s) 283, 779, 886
Tth111I GACNNNGTC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 707
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 110, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 1025
XspI CTAG 3 cut(s) 63, 74, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.