Rw1G030690

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012652
Physical Location & Seq
Reverse (-)
58641749 .. 58653869
12121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G030690.1

Sequence Viewer

Length: 1452 bp
ATGGAGAGTAAGGACCACCACTTCCTTGTCATCTCCTCCACAGCACAAGGCCATATGAACCCTAGTCTCCAACTAGCTAAGCGGCTGATAGACATTGGAACCTCACATGTCACCTTTGTCACCACAGTCCATGGCCTTGCCCAAATCAAATCCTTACCTTCTCTAGAAGGCTTATCATTTGCTTCGTTCTCCAATGGCTTTGACGATGGAGTTAAACCCGACAATGACCCAGACGACATCATGTCTGAGCTGAAGCGGGCGGGATCACAATCACTCACTGTTTTGATTGAGAAGATCTCCAAATCCGATGAGCATGGCCCTATCACCTTCTTAATCTACACCATCCTCCTCCCTTGGGCTGCTGAAGTTGCCAGTAGTTTTGGTATAGCTTCTGCGTTTCTATGCGTATTATCCACCACTTCCTTTGCAATTTGCCACCATTACTTCAAAGATTACTATAAGAATCAGAGTAGCCTTCCATTTCCAAGTTCCATAACAATCGATGGTTTGCCACCTTTTGCTTCTGACGAGCTACCTTCCTATCTCCTACCTTCCAGTCCACATGTTTCGATTCTCCCTACCTTGCAGGAACACTACCAAATTTTGGAACAGGATCTCAACTCTTGTGTGCTGCTTAACACCTTTGATGGGTTAGAGGAGGCAGCAATCAGAGATATGAGAAGTCATATGAATCTGATTACTGTTGGTCCCTTGATTCGTTCCAATGATGTCGAAGTTTGTTGCGACTTGTTTGACAAGTCTGGGGACGATTACCTTCAGTGGCTGGACTCAAAAGCAGATTCTTCTGTGGTTTATGCATCGTTTGGGAGCTTGGCGGTGTTGTCGAGTGGTCAGATGGAAGAGATACTACATGGTTTGGTTGACAGTGGACTCCCAGTTCTATGGGTTATCCGCAAGTCAGGAAATGAAGGGGGTCAAGAAACTCAAAATCTGATAAACAATACACTAAAGAAGGAACAGGGGTTAATAGTGCCATGGTGTTCACAAGTAGAGGTGCTGAACCACAAGTCAGTTGGGTGTTTTGTGACGCATTGTGGGTGGAACTCTACTATAGAGAGCTTGGCAGCTGGTGTTCCGGTTGTTGGGTGCCCTCATTTTGCAGACCAGTCTACAAATGCCAAGCTGGTTGAGGAGCTGTGGGGGACTGGAGTTAGAGCCAGACAAAATGAAGAGGAAGTGATCAAGCGTGAAGAGATTAAGAGGTGTTTGGAAGAGCTGTGGGGGACTGGAGTTAGAGCCAGACAAAATGAAGAGGGAGTGATCGAGCGTGAAGAGATCAAGAGGTGTCTGGAAGTGGTGATGGGGGGTGGAGAAAGAGGGGAGGAGATGAGAAGGAATGCTCAGAAATGGAAAGGTTTGGCTATGAAGGCTGTGAAGGAAGGTGGTTCTTCGGATGATAATCTCAGGAACTTCGTCAGAAGGTTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

483

Amino Acids

53.27

Weight (kDa)

5.17

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 245 - 390 8e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1107
AccB7I CCANNNNNTGG 1 cut(s) 604
AccI GTMKAC 1 cut(s) 1130
AciI CCGC 5 cut(s) 82, 256, 260, 836, 913
AclWI GGATC 2 cut(s) 271, 621
AcsI RAATTY 1 cut(s) 600
AcuI CTGAAG 3 cut(s) 272, 384, 761
AfiI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
AflIII ACRYGT 2 cut(s) 106, 562
AgsI TTSAA 1 cut(s) 448
AhdI GACNNNNNGTC 1 cut(s) 241
AloI GAACNNNNNNTCC 2 cut(s) 882, 914
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 271, 621
AlwNI CAGNNNCTG 1 cut(s) 784
AoxI GGCC 3 cut(s) 49, 133, 316
ApeKI GCWGC 4 cut(s) 359, 631, 662, 1085
ApoI RAATTY 1 cut(s) 600
AspS9I GGNCC 3 cut(s) 13, 317, 707
AsuHPI GGTGA 4 cut(s) 103, 112, 316, 1330
AvaII GGWCC 2 cut(s) 13, 707
BaeGI GKGCMC 1 cut(s) 1112
BanI GGYRCC 1 cut(s) 1107
BarI GAAGNNNNNNTAC 2 cut(s) 852, 884
BbvI GCAGC 4 cut(s) 346, 618, 674, 1097
BccI CCATC 6 cut(s) 200, 350, 497, 641, 850, 1315
BclI TGATCA 1 cut(s) 1200
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 63, 74, 164
BfmI CTRYAG 1 cut(s) 1071
BglII AGATCT 1 cut(s) 294
BisI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 5 cut(s) 84, 361, 633, 664, 1087
Bme18I GGWCC 2 cut(s) 13, 707
BmeRI GACNNNNNGTC 1 cut(s) 241
BmgT120I GGNCC 3 cut(s) 13, 317, 707
BmiI GGNNCC 3 cut(s) 100, 709, 1109
BmrI ACTGGG 1 cut(s) 890
BmsI GCATC 1 cut(s) 827
BmuI ACTGGG 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 2 cut(s) 1188, 1269
Bpu1102I GCTNAGC 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 501
BsaBI GATNNNNATC 2 cut(s) 268, 1419
BsaJI CCNNGG 3 cut(s) 130, 353, 995
BsaWI WCCGGW 1 cut(s) 1096
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
Bse1I ACTGG 6 cut(s) 372, 555, 896, 1126, 1171, 1252
Bse8I GATNNNNATC 2 cut(s) 268, 1419
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 3 cut(s) 130, 353, 995
BseGI GGATG 2 cut(s) 342, 1420
BseJI GATNNNNATC 2 cut(s) 268, 1419
BseLI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
BseMII CTCAG 3 cut(s) 237, 1376, 1438
BseNI ACTGG 6 cut(s) 372, 555, 896, 1126, 1171, 1252
BseRI GAGGAG 5 cut(s) 25, 338, 671, 1166, 1358
BseSI GKGCMC 1 cut(s) 1112
BseXI GCAGC 4 cut(s) 346, 618, 674, 1097
BshFI GGCC 3 cut(s) 51, 135, 318
BshNI GGYRCC 1 cut(s) 1107
BshVI ATCGAT 1 cut(s) 501
BsiSI CCGG 1 cut(s) 1097
BslFI GGGAC 4 cut(s) 693, 779, 1177, 1258
BslI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 4 cut(s) 693, 779, 1177, 1258
BsmI GAATGC 1 cut(s) 1363
BsnI GGCC 3 cut(s) 51, 135, 318
Bsp1286I GDGCHC 1 cut(s) 1112
Bsp143I GATC 6 cut(s) 263, 294, 613, 1200, 1281, 1296
Bsp1720I GCTNAGC 1 cut(s) 78
Bsp19I CCATGG 2 cut(s) 130, 995
BspACI CCGC 5 cut(s) 82, 256, 260, 836, 913
BspANI GGCC 3 cut(s) 51, 135, 318
BspCNI CTCAG 3 cut(s) 238, 1375, 1437
BspDI ATCGAT 1 cut(s) 501
BspLI GGNNCC 3 cut(s) 100, 709, 1109
BspPI GGATC 2 cut(s) 271, 621
BspQI GCTCTTC 1 cut(s) 1227
BspT107I GGYRCC 1 cut(s) 1107
BsrI ACTGG 6 cut(s) 372, 555, 896, 1126, 1171, 1252
BssECI CCNNGG 3 cut(s) 130, 353, 995
BssMI GATC 6 cut(s) 263, 294, 613, 1200, 1281, 1296
BssT1I CCWWGG 3 cut(s) 130, 353, 995
Bst4CI ACNGT 4 cut(s) 127, 280, 703, 887
Bst6I CTCTTC 6 cut(s) 855, 1185, 1206, 1227, 1266, 1287
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 78, 246, 1362, 1424
BstDSI CCRYGG 2 cut(s) 130, 995
BstF5I GGATG 2 cut(s) 342, 1420
BstKTI GATC 6 cut(s) 266, 297, 616, 1203, 1284, 1299
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 6 cut(s) 263, 294, 613, 1200, 1281, 1296
BstMWI GCNNNNNNNGC 2 cut(s) 368, 1388
BstNSI RCATGY 2 cut(s) 110, 566
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 1112
BstV1I GCAGC 4 cut(s) 346, 618, 674, 1097
BstX2I RGATCY 2 cut(s) 294, 613
BstXI CCANNNNNNTGG 1 cut(s) 903
BstYI RGATCY 2 cut(s) 294, 613
Bsu15I ATCGAT 1 cut(s) 501
BsuRI GGCC 3 cut(s) 51, 135, 318
BsuTUI ATCGAT 1 cut(s) 501
BtgI CCRYGG 2 cut(s) 130, 995
BtsCI GGATG 2 cut(s) 342, 1420
BtsIMutI CAGTG 3 cut(s) 276, 785, 892
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 784
Cfr13I GGNCC 3 cut(s) 13, 317, 707
ClaI ATCGAT 1 cut(s) 501
CseI GACGC 1 cut(s) 1057
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 7 cut(s) 107, 131, 241, 314, 563, 872, 996
DdeI CTNAG 4 cut(s) 78, 246, 1362, 1424
DpnI GATC 6 cut(s) 265, 296, 615, 1202, 1283, 1298
DpnII GATC 6 cut(s) 263, 294, 613, 1200, 1281, 1296
DriI GACNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 6 cut(s) 855, 1185, 1206, 1227, 1266, 1287
Eam1105I GACNNNNNGTC 1 cut(s) 241
EarI CTCTTC 6 cut(s) 855, 1185, 1206, 1227, 1266, 1287
Eco130I CCWWGG 3 cut(s) 130, 353, 995
Eco47I GGWCC 2 cut(s) 13, 707
Eco57I CTGAAG 3 cut(s) 272, 384, 761
EcoT14I CCWWGG 3 cut(s) 130, 353, 995
EcoT22I ATGCAT 1 cut(s) 820
ErhI CCWWGG 3 cut(s) 130, 353, 995
FaeI CATG 7 cut(s) 110, 134, 244, 317, 566, 875, 999
FaqI GGGAC 4 cut(s) 693, 779, 1177, 1258
FatI CATG 7 cut(s) 106, 130, 240, 313, 562, 871, 995
FauI CCCGC 2 cut(s) 249, 253
FauNDI CATATG 2 cut(s) 54, 687
FbaI TGATCA 1 cut(s) 1200
FblI GTMKAC 1 cut(s) 1130
Fnu4HI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
FokI GGATG 2 cut(s) 329, 1427
Fsp4HI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
FspBI CTAG 3 cut(s) 63, 74, 164
GluI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
GsuI CTGGAG 2 cut(s) 1188, 1269
HaeIII GGCC 3 cut(s) 51, 135, 318
HapII CCGG 1 cut(s) 1097
HgaI GACGC 1 cut(s) 1057
Hin1II CATG 7 cut(s) 110, 134, 244, 317, 566, 875, 999
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 7 cut(s) 463, 571, 691, 715, 788, 800, 891
HpaII CCGG 1 cut(s) 1097
HphI GGTGA 4 cut(s) 103, 112, 316, 1330
Hpy166II GTNNAC 5 cut(s) 560, 883, 890, 1004, 1131
Hpy188III TCNNGA 6 cut(s) 164, 921, 938, 1300, 1310, 1426
Hpy8I GTNNAC 5 cut(s) 560, 883, 890, 1004, 1131
HpyCH4III ACNGT 4 cut(s) 127, 280, 703, 887
HpyCH4V TGCA 4 cut(s) 428, 586, 818, 1121
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 1388
HpyF3I CTNAG 4 cut(s) 78, 246, 1362, 1424
Hsp92II CATG 7 cut(s) 110, 134, 244, 317, 566, 875, 999
Ksp22I TGATCA 1 cut(s) 1200
Kzo9I GATC 6 cut(s) 263, 294, 613, 1200, 1281, 1296
LguI GCTCTTC 1 cut(s) 1227
LmnI GCTCC 2 cut(s) 828, 1153
Lsp1109I GCAGC 4 cut(s) 346, 618, 674, 1097
LweI GCATC 1 cut(s) 827
MaeI CTAG 3 cut(s) 63, 74, 164
MaeIII GTNAC 3 cut(s) 109, 118, 1045
MalI GATC 6 cut(s) 265, 296, 615, 1202, 1283, 1298
MboI GATC 6 cut(s) 263, 294, 613, 1200, 1281, 1296
MboII GAAGA 9 cut(s) 304, 795, 872, 1202, 1223, 1244, 1283, 1304, 1401
MflI RGATCY 2 cut(s) 294, 613
MhlI GDGCHC 1 cut(s) 1112
MluCI AATT 2 cut(s) 429, 600
MlyI GAGTC 2 cut(s) 782, 885
MmeI TCCRAC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 820
MseI TTAA 5 cut(s) 213, 332, 636, 986, 1218
MspA1I CMGCKG 1 cut(s) 1088
MspI CCGG 1 cut(s) 1097
Mva1269I GAATGC 1 cut(s) 1363
MwoI GCNNNNNNNGC 2 cut(s) 368, 1388
NcoI CCATGG 2 cut(s) 130, 995
NdeI CATATG 2 cut(s) 54, 687
NdeII GATC 6 cut(s) 263, 294, 613, 1200, 1281, 1296
NlaIII CATG 7 cut(s) 110, 134, 244, 317, 566, 875, 999
NlaIV GGNNCC 3 cut(s) 100, 709, 1109
NmuCI GTSAC 3 cut(s) 109, 118, 1045
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 2 cut(s) 110, 566
PciI ACATGT 2 cut(s) 106, 562
PciSI GCTCTTC 1 cut(s) 1227
PctI GAATGC 1 cut(s) 1363
PfeI GAWTC 5 cut(s) 463, 571, 691, 715, 800
PflMI CCANNNNNTGG 1 cut(s) 604
PkrI GCNGC 5 cut(s) 84, 361, 633, 664, 1087
PleI GAGTC 2 cut(s) 782, 885
PpsI GAGTC 2 cut(s) 782, 885
PscI ACATGT 2 cut(s) 106, 562
PspN4I GGNNCC 3 cut(s) 100, 709, 1109
PspPI GGNCC 3 cut(s) 13, 317, 707
PstNI CAGNNNCTG 1 cut(s) 784
PsuI RGATCY 2 cut(s) 294, 613
PvuII CAGCTG 1 cut(s) 1088
SapI GCTCTTC 1 cut(s) 1227
SaqAI TTAA 5 cut(s) 213, 332, 636, 986, 1218
SatI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
Sau3AI GATC 6 cut(s) 263, 294, 613, 1200, 1281, 1296
Sau96I GGNCC 3 cut(s) 13, 317, 707
SchI GAGTC 2 cut(s) 782, 885
SduI GDGCHC 1 cut(s) 1112
SfaNI GCATC 1 cut(s) 827
SfcI CTRYAG 1 cut(s) 1071
SinI GGWCC 2 cut(s) 13, 707
Sse9I AATT 2 cut(s) 429, 600
SsiI CCGC 5 cut(s) 82, 256, 260, 836, 913
SspMI CTAG 3 cut(s) 63, 74, 164
StyI CCWWGG 3 cut(s) 130, 353, 995
TaaI ACNGT 4 cut(s) 127, 280, 703, 887
TaqI TCGA 5 cut(s) 501, 569, 732, 845, 1284
TasI AATT 2 cut(s) 429, 600
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 5 cut(s) 463, 571, 691, 715, 800
Tru1I TTAA 5 cut(s) 213, 332, 636, 986, 1218
Tru9I TTAA 5 cut(s) 213, 332, 636, 986, 1218
TscAI CASTG 3 cut(s) 283, 785, 892
TseFI GTSAC 3 cut(s) 109, 118, 1045
TseI GCWGC 4 cut(s) 359, 631, 662, 1085
Tsp45I GTSAC 3 cut(s) 109, 118, 1045
TspDTI ATGAA 6 cut(s) 71, 704, 942, 1203, 1284, 1400
TspRI CASTG 3 cut(s) 283, 785, 892
Van91I CCANNNNNTGG 1 cut(s) 604
VpaK11BI GGWCC 2 cut(s) 13, 707
XapI RAATTY 1 cut(s) 600
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 110, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 1031
XmiI GTMKAC 1 cut(s) 1130
XspI CTAG 3 cut(s) 63, 74, 164
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.