Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8515997.1

Orthogroup ID

OG0012652

Physical Location & Seq

Genomic Coordinates Reverse (-)

2366 .. 3496

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8515997.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgtctgagctgaaacgggcgggatcacaatcactcactgctttgattgaaaagatctccaaatccgatgagcatggccctatcaccttcctaatctacactatgctcctcccttgggcagctgaagttgcaagtggttttggtatagcttctgcgtttctttgcatatcatccaccacttcctttgcaatttgccaccattacttcagagattactataagaatcagagtagccttccatttccaagtttcataacaatagatggattgccaccttttgcttctgatgagctaccttcctatctcctacccaccagtccacatgtttcgattctccctaccattcaggaacactaccaaatcttggaacaggatcccaaatcttgtgtgctgcttaacacctttgatgggttagaagaggcaacaatcagagatatgagaggtcatatgaatctgattactgttggtcccttggctcgttccaatgatgccgaagttcgttgcgacttgtttgacaagtctggggacgattaccttcagtggctggactcaaaagcagattcttctgtggtttatgtatcgtttgggagcatggtggtgttgaagggtggtcagatgggagagatactacatggtttggtcgacagtggactcccagttctatgggttatccgcaagtcaggaaatgaagggggtcaagaaactcaaaatctgatcaacaatacactaaagaaggaacaggggttaatagtcccatggtgttcacaattagaggtgctgagccacaagtcagttgggtgttttgtgatgcattgtgggtggaactctactatagagagcttggcagctggtgttccggttgttgggtgccctcattttgcagaccagtctacaaatgccaagctggttgaggagctgtgggggactggagttagagccagacaaaatgaagagggagtgatcgagcgtgaagagatcaagaggtgtctggaagtggtgatgggggatggagaaagaggggaggagatgagaaggaatgctcagaaatggaaaggtttggctatgaaggctgtgaaggaaggtggttcttcggatgataatctcaggaacttcgtcagaaggttgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

376

Amino Acids

41.51

Weight (kDa)

5.36

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22821
malus_domestica	MD15G1410400.v1.1
prunus_persica	Prupe.1G552100_v2.0.a1
pyrus_communis	pycom15g36530
rosa_chinensis	RchiOBHm_Chr1g0367971
rosa_laevigata	RLG00000027250 RLG00000027252
rosa_multiflora	Rmu_co8515997.1_g000002 Rmu_sc0011446.1_g000008
rosa_roxburghii	Rroxscaffold_4G00288990 Rroxscaffold_4G00289000 Rroxscaffold_4G00289040
rosa_rugosa	Rorug01G0337900 Rorug01G0338000 Rorug01G0338100
rosa_samantha	Rh1AG344700 Rh1AG344900 Rh1DG339100
rosa_wichuraiana	Rw1G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	867
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccI	GTMKAC	2 cut(s)	642, 890
AciI	CCGC	2 cut(s)	20, 673
AclWI	GGATC	3 cut(s)	31, 368, 381
AcuI	CTGAAG	3 cut(s)	144, 190, 521
AfiI	CCNNNNNNNGG	4 cut(s)	115, 364, 408, 863
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	50, 604
AloI	GAACNNNNNNTCC	2 cut(s)	642, 674
AluBI	AGCT	8 cut(s)	10, 122, 149, 292, 840, 848, 904, 916
AluI	AGCT	8 cut(s)	10, 122, 149, 292, 840, 848, 904, 916
AlwI	GGATC	3 cut(s)	31, 368, 381
AlwNI	CAGNNNCTG	1 cut(s)	544
AoxI	GGCC	1 cut(s)	76
ApeKI	GCWGC	3 cut(s)	119, 391, 845
AspS9I	GGNCC	2 cut(s)	77, 467
AsuHPI	GGTGA	2 cut(s)	76, 1009
AvaII	GGWCC	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	872
BamHI	GGATCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	867
BbvI	GCAGC	3 cut(s)	131, 378, 857
BccI	CCATC	5 cut(s)	257, 401, 610, 994, 1001
BclI	TGATCA	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	831
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	3 cut(s)	120, 392, 846
BlpI	GCTNAGC	1 cut(s)	779
BlsI	GCNGC	3 cut(s)	121, 393, 847
Bme18I	GGWCC	1 cut(s)	467
BmgT120I	GGNCC	2 cut(s)	77, 467
BmiI	GGNNCC	3 cut(s)	375, 469, 869
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	2 cut(s)	478, 798
BmuI	ACTGGG	1 cut(s)	650
BpmI	CTGGAG	1 cut(s)	948
Bpu1102I	GCTNAGC	1 cut(s)	779
BsaBI	GATNNNNATC	2 cut(s)	28, 1098
BsaJI	CCNNGG	3 cut(s)	113, 471, 755
BsaWI	WCCGGW	1 cut(s)	856
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 364, 408, 863
Bse1I	ACTGG	4 cut(s)	315, 656, 886, 931
Bse8I	GATNNNNATC	2 cut(s)	28, 1098
BseDI	CCNNGG	3 cut(s)	113, 471, 755
BseGI	GGATG	3 cut(s)	170, 1012, 1099
BseJI	GATNNNNATC	2 cut(s)	28, 1098
BseLI	CCNNNNNNNGG	4 cut(s)	115, 364, 408, 863
BseMII	CTCAG	3 cut(s)	770, 1055, 1117
BseNI	ACTGG	4 cut(s)	315, 656, 886, 931
BseRI	GAGGAG	3 cut(s)	98, 926, 1037
BseSI	GKGCMC	1 cut(s)	872
BseXI	GCAGC	3 cut(s)	131, 378, 857
BshFI	GGCC	1 cut(s)	78
BshNI	GGYRCC	1 cut(s)	867
BsiSI	CCGG	1 cut(s)	857
BslFI	GGGAC	4 cut(s)	453, 539, 737, 937
BslI	CCNNNNNNNGG	4 cut(s)	115, 364, 408, 863
BsmFI	GGGAC	4 cut(s)	453, 539, 737, 937
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	872
Bsp143I	GATC	6 cut(s)	23, 54, 373, 714, 960, 975
Bsp1720I	GCTNAGC	1 cut(s)	779
Bsp19I	CCATGG	1 cut(s)	755
BspACI	CCGC	2 cut(s)	20, 673
BspANI	GGCC	1 cut(s)	78
BspCNI	CTCAG	3 cut(s)	771, 1054, 1116
BspLI	GGNNCC	3 cut(s)	375, 469, 869
BspPI	GGATC	3 cut(s)	31, 368, 381
BspT107I	GGYRCC	1 cut(s)	867
BsrI	ACTGG	4 cut(s)	315, 656, 886, 931
BssECI	CCNNGG	3 cut(s)	113, 471, 755
BssMI	GATC	6 cut(s)	23, 54, 373, 714, 960, 975
BssT1I	CCWWGG	3 cut(s)	113, 471, 755
Bst4CI	ACNGT	2 cut(s)	463, 647
Bst6I	CTCTTC	3 cut(s)	411, 945, 966
BstDEI	CTNAG	4 cut(s)	6, 779, 1041, 1103
BstDSI	CCRYGG	1 cut(s)	755
BstF5I	GGATG	3 cut(s)	170, 1012, 1099
BstKTI	GATC	6 cut(s)	26, 57, 376, 717, 963, 978
BstMBI	GATC	6 cut(s)	23, 54, 373, 714, 960, 975
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 1067
BstNSI	RCATGY	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	831
BstSLI	GKGCMC	1 cut(s)	872
BstV1I	GCAGC	3 cut(s)	131, 378, 857
BstX2I	RGATCY	2 cut(s)	54, 373
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	2 cut(s)	54, 373
BsuRI	GGCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	755
BtsCI	GGATG	3 cut(s)	170, 1012, 1099
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	3 cut(s)	36, 545, 652
CaiI	CAGNNNCTG	1 cut(s)	544
Cfr13I	GGNCC	2 cut(s)	77, 467
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	5 cut(s)	74, 323, 592, 632, 756
DdeI	CTNAG	4 cut(s)	6, 779, 1041, 1103
DpnI	GATC	6 cut(s)	25, 56, 375, 716, 962, 977
DpnII	GATC	6 cut(s)	23, 54, 373, 714, 960, 975
Eam1104I	CTCTTC	3 cut(s)	411, 945, 966
EarI	CTCTTC	3 cut(s)	411, 945, 966
Eco130I	CCWWGG	3 cut(s)	113, 471, 755
Eco47I	GGWCC	1 cut(s)	467
Eco57I	CTGAAG	3 cut(s)	144, 190, 521
EcoT14I	CCWWGG	3 cut(s)	113, 471, 755
EcoT22I	ATGCAT	1 cut(s)	813
ErhI	CCWWGG	3 cut(s)	113, 471, 755
FaeI	CATG	5 cut(s)	77, 326, 595, 635, 759
FaqI	GGGAC	4 cut(s)	453, 539, 737, 937
FatI	CATG	5 cut(s)	73, 322, 591, 631, 755
FauI	CCCGC	1 cut(s)	13
FauNDI	CATATG	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	714
FblI	GTMKAC	2 cut(s)	642, 890
Fnu4HI	GCNGC	3 cut(s)	120, 392, 846
FokI	GGATG	3 cut(s)	157, 1019, 1106
Fsp4HI	GCNGC	3 cut(s)	120, 392, 846
GluI	GCNGC	3 cut(s)	120, 392, 846
GsuI	CTGGAG	1 cut(s)	948
HaeIII	GGCC	1 cut(s)	78
HapII	CCGG	1 cut(s)	857
Hin1II	CATG	5 cut(s)	77, 326, 595, 635, 759
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	6 cut(s)	223, 331, 451, 548, 560, 651
HpaII	CCGG	1 cut(s)	857
HphI	GGTGA	2 cut(s)	76, 1009
Hpy166II	GTNNAC	5 cut(s)	320, 643, 650, 764, 891
Hpy188III	TCNNGA	6 cut(s)	347, 681, 698, 979, 989, 1105
Hpy8I	GTNNAC	5 cut(s)	320, 643, 650, 764, 891
HpyCH4III	ACNGT	2 cut(s)	463, 647
HpyCH4V	TGCA	5 cut(s)	131, 165, 188, 811, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 1067
HpyF3I	CTNAG	4 cut(s)	6, 779, 1041, 1103
Hsp92II	CATG	5 cut(s)	77, 326, 595, 635, 759
Ksp22I	TGATCA	1 cut(s)	714
Kzo9I	GATC	6 cut(s)	23, 54, 373, 714, 960, 975
LmnI	GCTCC	3 cut(s)	111, 588, 913
Lsp1109I	GCAGC	3 cut(s)	131, 378, 857
LweI	GCATC	2 cut(s)	478, 798
MalI	GATC	6 cut(s)	25, 56, 375, 716, 962, 977
MboI	GATC	6 cut(s)	23, 54, 373, 714, 960, 975
MboII	GAAGA	5 cut(s)	428, 555, 962, 983, 1080
MflI	RGATCY	2 cut(s)	54, 373
MhlI	GDGCHC	1 cut(s)	872
MluCI	AATT	2 cut(s)	189, 767
MlyI	GAGTC	2 cut(s)	542, 645
Mph1103I	ATGCAT	1 cut(s)	813
MseI	TTAA	2 cut(s)	396, 746
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	2 cut(s)	122, 848
MspI	CCGG	1 cut(s)	857
Mva1269I	GAATGC	1 cut(s)	1042
MwoI	GCNNNNNNNGC	2 cut(s)	128, 1067
NcoI	CCATGG	1 cut(s)	755
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	6 cut(s)	23, 54, 373, 714, 960, 975
NlaIII	CATG	5 cut(s)	77, 326, 595, 635, 759
NlaIV	GGNNCC	3 cut(s)	375, 469, 869
NsiI	ATGCAT	1 cut(s)	813
NspI	RCATGY	1 cut(s)	326
PciI	ACATGT	1 cut(s)	322
PctI	GAATGC	1 cut(s)	1042
PfeI	GAWTC	4 cut(s)	223, 331, 451, 560
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	3 cut(s)	121, 393, 847
PleI	GAGTC	2 cut(s)	542, 645
PpsI	GAGTC	2 cut(s)	542, 645
PscI	ACATGT	1 cut(s)	322
PspN4I	GGNNCC	3 cut(s)	375, 469, 869
PspPI	GGNCC	2 cut(s)	77, 467
PstNI	CAGNNNCTG	1 cut(s)	544
PsuI	RGATCY	2 cut(s)	54, 373
PvuII	CAGCTG	2 cut(s)	122, 848
RseI	CAYNNNNRTG	1 cut(s)	596
SalI	GTCGAC	1 cut(s)	641
SaqAI	TTAA	2 cut(s)	396, 746
SatI	GCNGC	3 cut(s)	120, 392, 846
Sau3AI	GATC	6 cut(s)	23, 54, 373, 714, 960, 975
Sau96I	GGNCC	2 cut(s)	77, 467
SchI	GAGTC	2 cut(s)	542, 645
SduI	GDGCHC	1 cut(s)	872
SfaNI	GCATC	2 cut(s)	478, 798
SfcI	CTRYAG	1 cut(s)	831
SinI	GGWCC	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	596
Sse9I	AATT	2 cut(s)	189, 767
SsiI	CCGC	2 cut(s)	20, 673
StyI	CCWWGG	3 cut(s)	113, 471, 755
TaaI	ACNGT	2 cut(s)	463, 647
TaqI	TCGA	3 cut(s)	329, 642, 963
TasI	AATT	2 cut(s)	189, 767
TfiI	GAWTC	4 cut(s)	223, 331, 451, 560
Tru1I	TTAA	2 cut(s)	396, 746
Tru9I	TTAA	2 cut(s)	396, 746
TscAI	CASTG	3 cut(s)	43, 545, 652
TseI	GCWGC	3 cut(s)	119, 391, 845
TspDTI	ATGAA	5 cut(s)	241, 464, 702, 963, 1079
TspRI	CASTG	3 cut(s)	43, 545, 652
Van91I	CCANNNNNTGG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	467
XceI	RCATGY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	791
XmiI	GTMKAC	2 cut(s)	642, 890
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.