Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012652

Physical Location & Seq

Genomic Coordinates Reverse (-)

45124585 .. 45126363

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G552100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGACATGAAGCATCATCATCATCACTTCCTTCTCATATCCTGCCCAGCCCAAGGCCACATAAACCCTACTCTCCAACTTGCCAAGCGCCTCATAGGAATTGGAGGCACACATGTCACTTATGCCACCACCATCCGTGGCCTCACCAAAATCAAATCCTTCCCTTCTCTTGAAGGCTTGTCATATGCTTCTTTCTCAGATGGCTTTGATGATGGAATCAAACCAACCAATGACCCCAATCTCTTCATGTCTGAATTTAAGCTTGTGGGATCAAAAACACTCAAAGCCTTGATTGAGAAAATCTCTACATCTCAAGATCACTCAGGCCCTGTCACTTTTCTCATCTACTCTGTCCTCCTCCCTTGGGCTGCTGAAGTTGCAAGTGATTGTGGCATACCATCTGCTTTTCTCTGCATACAATCCACCACCTCCTTTGCACTTTGCCACCATTACTTCAACCATTTTCACAACTGCCCTCCATTTCCAAATTCTATGACAATAGAAGGGTTGCCTCCTTTTGCTCCCACAGAGCTACCTTCCTTTCTCCTACCAACCAGTCCACATGTTTCAGTCATCCCTACCTTTCAAGAACACATCCAAGTCTTGGAACAGGGCAAACCCAACTCCAGTCTTGTGCTACTCAACACTTTTGATGCCTTAGAAGGGGCAGCAATCAAAGCTCTCAGATCATCAAGCATGAATGTGATTCCAATTGGACCCTTGGTTATAACTGGGTTTTGGGAGGAAAATGAAAACCAATCCAGTGATGACGGGTTTCGTTGCGACTTGTTTGACAAATCTGAGGATGATTACCTTCAATGGCTGGACTCAAAACCAGATTGCTCAGTTGTTTATGTGTCATTTGGGAGCATGGTGGTGTTAAAGAGAGATCAGATTGAAGAGATGTTGAATGGACTAGTTGAGAGTGGCCTCCCAGTTTTATGGGTTATTCGCTGTGCAGAGAAGGGAGGAGATCAAGAAGCTCAGATAATGAAGATAAAGAACAGACTGAAAATCAAAGAACAGGGTTTAGTGGTGCCATGGTGTTCACAAATGGAGGTTTTAGGGCACAAGTCAGTGGGGTGTTTTGTGATGCATTGTGGGTGGAATTCAACTGTCGAGAGCTTGGTAGCTGGGGTTCCAATGGTGGGTTTTGCTCAATTTTCAGACCAGAACACAAATGCAAAACTAGTGGAGGAAGTGTGGGGGGTTGGAGTTAGAGCCAAAGAGAATGAAAAGGGAGTGATTGAGGGTGCAGAGATTAAGAGGTGCCTGGAGATTGTGATGGGAGATGGAGAGAGAGGGGAAGAGATAAGAAGGAATTGTGAAAAATGGAAAGGTTTGGCCAAAGAAGCTGTCAAGGAGGGTGGCTCTTCAGATTACAATCTCAGGCACTTTATTGGAGGATTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

472

Amino Acids

51.89

Weight (kDa)

5.66

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22821
malus_domestica	MD15G1410400.v1.1
prunus_persica	Prupe.1G552100_v2.0.a1
pyrus_communis	pycom15g36530
rosa_chinensis	RchiOBHm_Chr1g0367971
rosa_laevigata	RLG00000027250 RLG00000027252
rosa_multiflora	Rmu_co8515997.1_g000002 Rmu_sc0011446.1_g000008
rosa_roxburghii	Rroxscaffold_4G00288990 Rroxscaffold_4G00289000 Rroxscaffold_4G00289040
rosa_rugosa	Rorug01G0337900 Rorug01G0338000 Rorug01G0338100
rosa_samantha	Rh1AG344700 Rh1AG344900 Rh1DG339100
rosa_wichuraiana	Rw1G030690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	728
AccB1I	GGYRCC	2 cut(s)	1036, 1269
AccB7I	CCANNNNNTGG	1 cut(s)	604
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	1344
AcsI	RAATTY	3 cut(s)	254, 487, 1108
AcuI	CTGAAG	2 cut(s)	393, 1359
AfiI	CCNNNNNNNGG	5 cut(s)	53, 364, 604, 663, 1148
AflIII	ACRYGT	2 cut(s)	112, 562
AgsI	TTSAA	7 cut(s)	173, 457, 587, 818, 899, 910, 1113
AhlI	ACTAGT	2 cut(s)	916, 1189
AjnI	CCWGG	1 cut(s)	1272
AluBI	AGCT	7 cut(s)	262, 532, 680, 983, 1125, 1133, 1355
AluI	AGCT	7 cut(s)	262, 532, 680, 983, 1125, 1133, 1355
AlwI	GGATC	1 cut(s)	277
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	5 cut(s)	55, 139, 325, 928, 1344
ApeKI	GCWGC	2 cut(s)	368, 668
ApoI	RAATTY	3 cut(s)	254, 487, 1108
ArsI	GACNNNNNNTTYG	2 cut(s)	1341, 1373
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	326, 716
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	1071
BalI	TGGCCA	1 cut(s)	1346
BanI	GGYRCC	2 cut(s)	1036, 1269
BbvI	GCAGC	2 cut(s)	355, 680
BccI	CCATC	6 cut(s)	140, 194, 206, 406, 1279, 1286
BciT130I	CCWGG	1 cut(s)	1274
BcuI	ACTAGT	2 cut(s)	916, 1189
BfaI	CTAG	2 cut(s)	917, 1190
BfoI	RGCGCY	1 cut(s)	91
BisI	GCNGC	2 cut(s)	369, 669
BlsI	GCNGC	2 cut(s)	370, 670
Bme1390I	CCNGG	1 cut(s)	1274
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	2 cut(s)	326, 716
BmiI	GGNNCC	4 cut(s)	718, 1038, 1140, 1271
BmrFI	CCNGG	1 cut(s)	1274
BmrI	ACTGGG	2 cut(s)	741, 929
BmsI	GCATC	3 cut(s)	22, 643, 1083
BmuI	ACTGGG	2 cut(s)	741, 929
BplI	GAGNNNNNCTC	4 cut(s)	287, 319, 1355, 1387
BpmI	CTGGAG	2 cut(s)	610, 1295
BpuEI	CTTGAG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	1383
BsaJI	CCNNGG	5 cut(s)	52, 136, 362, 720, 1040
BsaXI	ACNNNNNCTCC	2 cut(s)	1187, 1217
Bsc4I	CCNNNNNNNGG	5 cut(s)	53, 364, 604, 663, 1148
Bse1I	ACTGG	5 cut(s)	555, 627, 736, 762, 935
Bse8I	GATNNNNATC	1 cut(s)	1383
BseBI	CCWGG	1 cut(s)	1274
BseDI	CCNNGG	5 cut(s)	52, 136, 362, 720, 1040
BseGI	GGATG	4 cut(s)	132, 573, 594, 811
BseJI	GATNNNNATC	1 cut(s)	1383
BseLI	CCNNNNNNNGG	5 cut(s)	53, 364, 604, 663, 1148
BseMII	CTCAG	7 cut(s)	210, 336, 697, 792, 858, 998, 1402
BseNI	ACTGG	5 cut(s)	555, 627, 736, 762, 935
BseRI	GAGGAG	2 cut(s)	347, 984
BseSI	GKGCMC	1 cut(s)	1071
BseXI	GCAGC	2 cut(s)	355, 680
BseYI	CCCAGC	2 cut(s)	46, 1133
BsgI	GTGCAG	2 cut(s)	978, 1275
BshFI	GGCC	5 cut(s)	57, 141, 327, 930, 1346
BshNI	GGYRCC	2 cut(s)	1036, 1269
BslI	CCNNNNNNNGG	5 cut(s)	53, 364, 604, 663, 1148
BsnI	GGCC	5 cut(s)	57, 141, 327, 930, 1346
Bsp1286I	GDGCHC	1 cut(s)	1071
Bsp143I	GATC	5 cut(s)	269, 316, 686, 889, 973
Bsp19I	CCATGG	1 cut(s)	1040
BspANI	GGCC	5 cut(s)	57, 141, 327, 930, 1346
BspCNI	CTCAG	7 cut(s)	209, 335, 696, 793, 857, 997, 1401
BspLI	GGNNCC	4 cut(s)	718, 1038, 1140, 1271
BspPI	GGATC	1 cut(s)	277
BspQI	GCTCTTC	1 cut(s)	1378
BspT107I	GGYRCC	2 cut(s)	1036, 1269
BsrI	ACTGG	5 cut(s)	555, 627, 736, 762, 935
BssECI	CCNNGG	5 cut(s)	52, 136, 362, 720, 1040
BssMI	GATC	5 cut(s)	269, 316, 686, 889, 973
BssT1I	CCWWGG	4 cut(s)	52, 362, 720, 1040
Bst2UI	CCWGG	1 cut(s)	1274
Bst4CI	ACNGT	1 cut(s)	1117
Bst6I	CTCTTC	4 cut(s)	248, 894, 1302, 1378
BstDEI	CTNAG	8 cut(s)	196, 322, 658, 683, 801, 844, 984, 1388
BstDSI	CCRYGG	2 cut(s)	136, 1040
BstF5I	GGATG	4 cut(s)	132, 573, 594, 811
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	5 cut(s)	272, 319, 689, 892, 976
BstMBI	GATC	5 cut(s)	269, 316, 686, 889, 973
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 677, 1352
BstNI	CCWGG	1 cut(s)	1274
BstNSI	RCATGY	2 cut(s)	116, 566
BstSCI	CCNGG	1 cut(s)	1272
BstSLI	GKGCMC	1 cut(s)	1071
BstV1I	GCAGC	2 cut(s)	355, 680
BstXI	CCANNNNNNTGG	1 cut(s)	942
BsuRI	GGCC	5 cut(s)	57, 141, 327, 930, 1346
BtgI	CCRYGG	2 cut(s)	136, 1040
BtsCI	GGATG	4 cut(s)	132, 573, 594, 811
BtsIMutI	CAGTG	2 cut(s)	769, 1083
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	326, 716
CspCI	CAANNNNNGTGG	6 cut(s)	415, 450, 1173, 1208, 1348, 1383
CviAII	CATG	7 cut(s)	7, 113, 247, 563, 697, 871, 1041
DdeI	CTNAG	8 cut(s)	196, 322, 658, 683, 801, 844, 984, 1388
DpnI	GATC	5 cut(s)	271, 318, 688, 891, 975
DpnII	GATC	5 cut(s)	269, 316, 686, 889, 973
EaeI	YGGCCR	1 cut(s)	1344
Eam1104I	CTCTTC	4 cut(s)	248, 894, 1302, 1378
EarI	CTCTTC	4 cut(s)	248, 894, 1302, 1378
Eco130I	CCWWGG	4 cut(s)	52, 362, 720, 1040
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	2 cut(s)	393, 1359
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	1108
EcoRII	CCWGG	1 cut(s)	1272
EcoT14I	CCWWGG	4 cut(s)	52, 362, 720, 1040
EcoT22I	ATGCAT	1 cut(s)	1098
ErhI	CCWWGG	4 cut(s)	52, 362, 720, 1040
FaeI	CATG	7 cut(s)	10, 116, 250, 566, 700, 874, 1044
FatI	CATG	7 cut(s)	6, 112, 246, 562, 696, 870, 1040
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	369, 669
FokI	GGATG	4 cut(s)	119, 560, 581, 818
Fsp4HI	GCNGC	2 cut(s)	369, 669
FspBI	CTAG	2 cut(s)	917, 1190
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	369, 669
GsaI	CCCAGC	2 cut(s)	50, 1137
GsuI	CTGGAG	2 cut(s)	610, 1295
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	5 cut(s)	57, 141, 327, 930, 1346
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	7 cut(s)	10, 116, 250, 566, 700, 874, 1044
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	216, 706, 827
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	560, 1049
Hpy188I	TCNGA	8 cut(s)	199, 253, 686, 802, 894, 987, 1168, 1378
Hpy188III	TCNNGA	5 cut(s)	170, 314, 587, 977, 1120
Hpy8I	GTNNAC	2 cut(s)	560, 1049
HpyCH4III	ACNGT	1 cut(s)	1117
HpyCH4V	TGCA	7 cut(s)	380, 414, 437, 959, 1096, 1184, 1256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 677, 1352
HpyF3I	CTNAG	8 cut(s)	196, 322, 658, 683, 801, 844, 984, 1388
Hsp92II	CATG	7 cut(s)	10, 116, 250, 566, 700, 874, 1044
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	269, 316, 686, 889, 973
LguI	GCTCTTC	1 cut(s)	1378
LmnI	GCTCC	2 cut(s)	526, 867
Lsp1109I	GCAGC	2 cut(s)	355, 680
LweI	GCATC	3 cut(s)	22, 643, 1083
MaeI	CTAG	2 cut(s)	917, 1190
MaeIII	GTNAC	2 cut(s)	115, 331
MalI	GATC	5 cut(s)	271, 318, 688, 891, 975
MboI	GATC	5 cut(s)	269, 316, 686, 889, 973
MboII	GAAGA	5 cut(s)	235, 911, 1006, 1319, 1365
MfeI	CAATTG	1 cut(s)	711
MhlI	GDGCHC	1 cut(s)	1071
MlsI	TGGCCA	1 cut(s)	1346
MluCI	AATT	7 cut(s)	99, 254, 487, 711, 1108, 1160, 1321
MluNI	TGGCCA	1 cut(s)	1346
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	2 cut(s)	100, 1192
Mox20I	TGGCCA	1 cut(s)	1346
Mph1103I	ATGCAT	1 cut(s)	1098
MscI	TGGCCA	1 cut(s)	1346
MseI	TTAA	3 cut(s)	258, 881, 1263
MslI	CAYNNNNRTG	2 cut(s)	701, 875
Msp20I	TGGCCA	1 cut(s)	1346
MspR9I	CCNGG	1 cut(s)	1274
MunI	CAATTG	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	1274
MwoI	GCNNNNNNNGC	3 cut(s)	377, 677, 1352
NcoI	CCATGG	1 cut(s)	1040
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	5 cut(s)	269, 316, 686, 889, 973
NlaIII	CATG	7 cut(s)	10, 116, 250, 566, 700, 874, 1044
NlaIV	GGNNCC	4 cut(s)	718, 1038, 1140, 1271
NmuCI	GTSAC	2 cut(s)	115, 331
NsiI	ATGCAT	1 cut(s)	1098
NspI	RCATGY	2 cut(s)	116, 566
PciI	ACATGT	2 cut(s)	112, 562
PciSI	GCTCTTC	1 cut(s)	1378
PfeI	GAWTC	2 cut(s)	216, 706
PflMI	CCANNNNNTGG	1 cut(s)	604
PkrI	GCNGC	2 cut(s)	370, 670
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PscI	ACATGT	2 cut(s)	112, 562
PsiI	TTATAA	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	1272
PspFI	CCCAGC	2 cut(s)	46, 1133
PspGI	CCWGG	1 cut(s)	1272
PspN4I	GGNNCC	4 cut(s)	718, 1038, 1140, 1271
PspPI	GGNCC	2 cut(s)	326, 716
PsrI	GAACNNNNNNTAC	2 cut(s)	1122, 1154
PstNI	CAGNNNCTG	1 cut(s)	329
RseI	CAYNNNNRTG	2 cut(s)	701, 875
SapI	GCTCTTC	1 cut(s)	1378
SaqAI	TTAA	3 cut(s)	258, 881, 1263
SatI	GCNGC	2 cut(s)	369, 669
Sau3AI	GATC	5 cut(s)	269, 316, 686, 889, 973
Sau96I	GGNCC	2 cut(s)	326, 716
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	1 cut(s)	1274
SduI	GDGCHC	1 cut(s)	1071
SfaNI	GCATC	3 cut(s)	22, 643, 1083
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	2 cut(s)	701, 875
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SpeI	ACTAGT	2 cut(s)	916, 1189
Sse9I	AATT	7 cut(s)	99, 254, 487, 711, 1108, 1160, 1321
SspMI	CTAG	2 cut(s)	917, 1190
StyD4I	CCNGG	1 cut(s)	1272
StyI	CCWWGG	4 cut(s)	52, 362, 720, 1040
TaaI	ACNGT	1 cut(s)	1117
TaqI	TCGA	1 cut(s)	1119
TasI	AATT	7 cut(s)	99, 254, 487, 711, 1108, 1160, 1321
TfiI	GAWTC	2 cut(s)	216, 706
Tru1I	TTAA	3 cut(s)	258, 881, 1263
Tru9I	TTAA	3 cut(s)	258, 881, 1263
TscAI	CASTG	2 cut(s)	769, 1083
TseFI	GTSAC	2 cut(s)	115, 331
TseI	GCWGC	2 cut(s)	368, 668
Tsp45I	GTSAC	2 cut(s)	115, 331
TspDTI	ATGAA	6 cut(s)	23, 235, 713, 765, 1007, 1248
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	769, 1083
Van91I	CCANNNNNTGG	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	3 cut(s)	254, 487, 1108
XceI	RCATGY	2 cut(s)	116, 566
XspI	CTAG	2 cut(s)	917, 1190
Zsp2I	ATGCAT	1 cut(s)	1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.