Rroxscaffold_4G00289040

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012652
Physical Location & Seq
Forward (+)
9660035 .. 9661405
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289040.1

Sequence Viewer

Length: 1371 bp
ATGGAGAGTAAGAACCACCACTTCCTTGTCATCTCCTGCGCAGGACAAGGCCATATGAACCCTAGTCTCCAACTAGCTAAGCGGCTTATAGACATTGGAAGCTCACATGTCACCTTTGTCACCAACGTCCATGGCCTTGCCCAAATCAAATCCTTACCTTCTCTAGAAGGCTTATCATTTGCTTCGTTCTCCGATGGCTTTGACGATGGAGTCAAACCCGCCAATGACCCGGACCACATCATGTCTGAGCTGAAACGGGCGGGATCACAATCACTCACTGCTTTGATTGAGAAGATCTCCAAATCCGATGAGCATGGCCCTATCACCTTCCTAATCTACACTATGCTCCTCCCTTGGGCAGTTGAAGTTGCAAGTAGTTTTGGTATAGCTTCTGCGTTTCTTTGCATATCATCCACCACTTCCTTTGCAATTTGCCACCATTACTTCAGAGATTACTATAAGAATCAGAGTAGCCTTCCATTTCCAAGTTCCATAACCATAGATGGTTTGCCACCTTTTGCTTCTGATGAGCTACCTTCCTATCTCCTACCCACCAGCCTACATGTTTCGATTCTCCCTACCATTCAGGAACACTACCAAATCTTGGAACAGGATCCCAAATCTTGTGTGCTGCTTAACACCTTTGATGGGTTAGAAGAGGCAGCAATCAGAGATATGAGAGGTCATATGAATCTGTTTACTGTTGGTCCCTTGGCTCGTTCCAATGATGCCGAAGTTCGTTGCGACTTGTTTGACAAGTCTGGGGACGATTACCTTCAGTGGCTGGACTCAAAAGCAGATTCTTCTGTGGTTTATGTATCGTTTGGGAGCATGGTGGTGTTGAAGAGTGGTCAGATGGGAGAGCTACTACATGGTTTGGTTGACAGTGGACTCCCAGTTCTATGGGTTATCCGCAAGTCAGGAAATGAAGGGGGTCAAGAAACTCAAAATCTGATCAACAATACACTAAAGAAGGAACAGGGGTTAATAGTCCCATGGTGTTCACAATTGGAGGTGCTGAGCCACAAGTCAGTTGGGTGTTTTGTGATGCATTGTGGGTGGAACTCTACTATAGAGAGCTTGGCAGCTGGTGTTCCGGTTGTTGGGTGCCCTCATTTCGCAGACCAGTCTACAAATGCCAAGCTGGTTGAGGAGCTGTGGGGGACTGGAGTTAGAGCCAGACAAAATGAAGAGGGAGTGATCGAGCGTGAAGAGATCAAGAGGTGTCTGGAAGTGGTGATGGGGGATAAAGAAAGAGGGGAGGAGATGAGAAGGAATGCTCAGAAATGGAAAGGTTTGGCTATGAAGGCTGTGAAGGAAGGTGGTTCTTCGGATGATAATCTCAGGAACTTCGCCAGAAGGTTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

456

Amino Acids

50.17

Weight (kDa)

5.59

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 243 - 418 1.3e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
Acc16I TGCGCA 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 1107
AccB7I CCANNNNNTGG 1 cut(s) 604
AccI GTMKAC 1 cut(s) 1130
AciI CCGC 4 cut(s) 82, 219, 260, 913
AclWI GGATC 3 cut(s) 271, 608, 621
AcuI CTGAAG 2 cut(s) 430, 761
AfiI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
AflIII ACRYGT 2 cut(s) 106, 562
AgsI TTSAA 2 cut(s) 365, 844
AloI GAACNNNNNNTCC 2 cut(s) 882, 914
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 3 cut(s) 271, 608, 621
AlwNI CAGNNNCTG 1 cut(s) 784
AoxI GGCC 3 cut(s) 49, 133, 316
ApeKI GCWGC 3 cut(s) 631, 662, 1085
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 232, 317, 707
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 4 cut(s) 103, 112, 316, 1249
AvaII GGWCC 2 cut(s) 232, 707
BaeGI GKGCMC 1 cut(s) 1112
BamHI GGATCC 1 cut(s) 613
BanI GGYRCC 1 cut(s) 1107
BbvI GCAGC 3 cut(s) 618, 674, 1097
BccI CCATC 6 cut(s) 188, 200, 497, 641, 850, 1234
BclI TGATCA 1 cut(s) 954
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 63, 74, 164
BfmI CTRYAG 1 cut(s) 1071
BglII AGATCT 1 cut(s) 294
BisI GCNGC 4 cut(s) 83, 632, 663, 1086
BlpI GCTNAGC 2 cut(s) 78, 1019
BlsI GCNGC 4 cut(s) 84, 633, 664, 1087
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 232, 707
BmgT120I GGNCC 3 cut(s) 232, 317, 707
BmiI GGNNCC 3 cut(s) 615, 709, 1109
BmrFI CCNGG 1 cut(s) 230
BmrI ACTGGG 1 cut(s) 890
BmsI GCATC 2 cut(s) 718, 1038
BmuI ACTGGG 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 1188
Bpu1102I GCTNAGC 2 cut(s) 78, 1019
BpuMI CCSGG 1 cut(s) 230
BsaBI GATNNNNATC 2 cut(s) 268, 1338
BsaJI CCNNGG 4 cut(s) 130, 353, 711, 995
BsaWI WCCGGW 1 cut(s) 1096
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
Bse1I ACTGG 3 cut(s) 896, 1126, 1171
Bse8I GATNNNNATC 2 cut(s) 268, 1338
BseDI CCNNGG 4 cut(s) 130, 353, 711, 995
BseGI GGATG 2 cut(s) 410, 1339
BseJI GATNNNNATC 2 cut(s) 268, 1338
BseLI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
BseMII CTCAG 4 cut(s) 237, 1010, 1295, 1357
BseNI ACTGG 3 cut(s) 896, 1126, 1171
BseRI GAGGAG 3 cut(s) 338, 1166, 1277
BseSI GKGCMC 1 cut(s) 1112
BseXI GCAGC 3 cut(s) 618, 674, 1097
BshFI GGCC 3 cut(s) 51, 135, 318
BshNI GGYRCC 1 cut(s) 1107
BsiSI CCGG 2 cut(s) 230, 1097
BslFI GGGAC 4 cut(s) 693, 779, 977, 1177
BslI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 4 cut(s) 693, 779, 977, 1177
BsmI GAATGC 1 cut(s) 1282
BsnI GGCC 3 cut(s) 51, 135, 318
Bsp1286I GDGCHC 1 cut(s) 1112
Bsp143I GATC 6 cut(s) 263, 294, 613, 954, 1200, 1215
Bsp1720I GCTNAGC 2 cut(s) 78, 1019
Bsp19I CCATGG 2 cut(s) 130, 995
BspACI CCGC 4 cut(s) 82, 219, 260, 913
BspANI GGCC 3 cut(s) 51, 135, 318
BspCNI CTCAG 4 cut(s) 238, 1011, 1294, 1356
BspLI GGNNCC 3 cut(s) 615, 709, 1109
BspPI GGATC 3 cut(s) 271, 608, 621
BspT107I GGYRCC 1 cut(s) 1107
BsrI ACTGG 3 cut(s) 896, 1126, 1171
BssECI CCNNGG 4 cut(s) 130, 353, 711, 995
BssMI GATC 6 cut(s) 263, 294, 613, 954, 1200, 1215
BssT1I CCWWGG 4 cut(s) 130, 353, 711, 995
Bst4CI ACNGT 2 cut(s) 703, 887
Bst6I CTCTTC 4 cut(s) 651, 839, 1185, 1206
BstDEI CTNAG 5 cut(s) 78, 246, 1019, 1281, 1343
BstDSI CCRYGG 2 cut(s) 130, 995
BstF5I GGATG 2 cut(s) 410, 1339
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 6 cut(s) 266, 297, 616, 957, 1203, 1218
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 6 cut(s) 263, 294, 613, 954, 1200, 1215
BstMWI GCNNNNNNNGC 1 cut(s) 1307
BstNSI RCATGY 2 cut(s) 110, 566
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 1112
BstV1I GCAGC 3 cut(s) 618, 674, 1097
BstX2I RGATCY 2 cut(s) 294, 613
BstXI CCANNNNNNTGG 2 cut(s) 903, 1363
BstYI RGATCY 2 cut(s) 294, 613
BsuRI GGCC 3 cut(s) 51, 135, 318
BtgI CCRYGG 2 cut(s) 130, 995
BtsCI GGATG 2 cut(s) 410, 1339
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 276, 785, 892
CaiI CAGNNNCTG 1 cut(s) 784
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 3 cut(s) 232, 317, 707
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 8 cut(s) 107, 131, 241, 314, 563, 832, 872, 996
DdeI CTNAG 5 cut(s) 78, 246, 1019, 1281, 1343
DpnI GATC 6 cut(s) 265, 296, 615, 956, 1202, 1217
DpnII GATC 6 cut(s) 263, 294, 613, 954, 1200, 1215
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 4 cut(s) 651, 839, 1185, 1206
EarI CTCTTC 4 cut(s) 651, 839, 1185, 1206
Eco130I CCWWGG 4 cut(s) 130, 353, 711, 995
Eco47I GGWCC 2 cut(s) 232, 707
Eco57I CTGAAG 2 cut(s) 430, 761
EcoT14I CCWWGG 4 cut(s) 130, 353, 711, 995
EcoT22I ATGCAT 1 cut(s) 1053
ErhI CCWWGG 4 cut(s) 130, 353, 711, 995
FaeI CATG 8 cut(s) 110, 134, 244, 317, 566, 835, 875, 999
FaqI GGGAC 4 cut(s) 693, 779, 977, 1177
FatI CATG 8 cut(s) 106, 130, 240, 313, 562, 831, 871, 995
FauI CCCGC 2 cut(s) 226, 253
FauNDI CATATG 2 cut(s) 54, 687
FbaI TGATCA 1 cut(s) 954
FblI GTMKAC 1 cut(s) 1130
Fnu4HI GCNGC 4 cut(s) 83, 632, 663, 1086
FokI GGATG 2 cut(s) 397, 1346
Fsp4HI GCNGC 4 cut(s) 83, 632, 663, 1086
FspBI CTAG 3 cut(s) 63, 74, 164
FspI TGCGCA 1 cut(s) 40
GlaI GCGC 1 cut(s) 40
GluI GCNGC 4 cut(s) 83, 632, 663, 1086
GsuI CTGGAG 1 cut(s) 1188
HaeIII GGCC 3 cut(s) 51, 135, 318
HapII CCGG 2 cut(s) 230, 1097
HhaI GCGC 1 cut(s) 41
Hin1II CATG 8 cut(s) 110, 134, 244, 317, 566, 835, 875, 999
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 7 cut(s) 210, 463, 571, 691, 788, 800, 891
HpaII CCGG 2 cut(s) 230, 1097
HphI GGTGA 4 cut(s) 103, 112, 316, 1249
Hpy166II GTNNAC 5 cut(s) 699, 883, 890, 1004, 1131
Hpy188III TCNNGA 7 cut(s) 164, 587, 921, 938, 1219, 1229, 1345
Hpy8I GTNNAC 5 cut(s) 699, 883, 890, 1004, 1131
HpyCH4III ACNGT 2 cut(s) 703, 887
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 371, 405, 428, 1051
HpyF10VI GCNNNNNNNGC 1 cut(s) 1307
HpyF3I CTNAG 5 cut(s) 78, 246, 1019, 1281, 1343
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 8 cut(s) 110, 134, 244, 317, 566, 835, 875, 999
HspAI GCGC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 954
Kzo9I GATC 6 cut(s) 263, 294, 613, 954, 1200, 1215
LmnI GCTCC 3 cut(s) 351, 828, 1153
Lsp1109I GCAGC 3 cut(s) 618, 674, 1097
LweI GCATC 2 cut(s) 718, 1038
MaeI CTAG 3 cut(s) 63, 74, 164
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 109, 118
MalI GATC 6 cut(s) 265, 296, 615, 956, 1202, 1217
MboI GATC 6 cut(s) 263, 294, 613, 954, 1200, 1215
MboII GAAGA 7 cut(s) 304, 668, 795, 856, 1202, 1223, 1320
MfeI CAATTG 1 cut(s) 1007
MflI RGATCY 2 cut(s) 294, 613
MhlI GDGCHC 1 cut(s) 1112
MluCI AATT 2 cut(s) 429, 1007
MlyI GAGTC 3 cut(s) 219, 782, 885
MmeI TCCRAC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 1053
MseI TTAA 2 cut(s) 636, 986
MslI CAYNNNNRTG 1 cut(s) 836
MspA1I CMGCKG 1 cut(s) 1088
MspI CCGG 2 cut(s) 230, 1097
MspR9I CCNGG 1 cut(s) 230
MunI CAATTG 1 cut(s) 1007
Mva1269I GAATGC 1 cut(s) 1282
MwoI GCNNNNNNNGC 1 cut(s) 1307
NciI CCSGG 1 cut(s) 230
NcoI CCATGG 2 cut(s) 130, 995
NdeI CATATG 2 cut(s) 54, 687
NdeII GATC 6 cut(s) 263, 294, 613, 954, 1200, 1215
NlaIII CATG 8 cut(s) 110, 134, 244, 317, 566, 835, 875, 999
NlaIV GGNNCC 3 cut(s) 615, 709, 1109
NmuCI GTSAC 2 cut(s) 109, 118
NsbI TGCGCA 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 1053
NspI RCATGY 2 cut(s) 110, 566
PciI ACATGT 2 cut(s) 106, 562
PctI GAATGC 1 cut(s) 1282
PfeI GAWTC 4 cut(s) 463, 571, 691, 800
PflMI CCANNNNNTGG 1 cut(s) 604
PkrI GCNGC 4 cut(s) 84, 633, 664, 1087
PleI GAGTC 3 cut(s) 218, 782, 885
PpsI GAGTC 3 cut(s) 218, 782, 885
PscI ACATGT 2 cut(s) 106, 562
PspN4I GGNNCC 3 cut(s) 615, 709, 1109
PspPI GGNCC 3 cut(s) 232, 317, 707
PstNI CAGNNNCTG 1 cut(s) 784
PsuI RGATCY 2 cut(s) 294, 613
PvuII CAGCTG 1 cut(s) 1088
RseI CAYNNNNRTG 1 cut(s) 836
SaqAI TTAA 2 cut(s) 636, 986
SatI GCNGC 4 cut(s) 83, 632, 663, 1086
Sau3AI GATC 6 cut(s) 263, 294, 613, 954, 1200, 1215
Sau96I GGNCC 3 cut(s) 232, 317, 707
SchI GAGTC 3 cut(s) 219, 782, 885
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 1112
SfaNI GCATC 2 cut(s) 718, 1038
SfcI CTRYAG 1 cut(s) 1071
SinI GGWCC 2 cut(s) 232, 707
SmiMI CAYNNNNRTG 1 cut(s) 836
Sse9I AATT 2 cut(s) 429, 1007
SsiI CCGC 4 cut(s) 82, 219, 260, 913
SspMI CTAG 3 cut(s) 63, 74, 164
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 4 cut(s) 130, 353, 711, 995
TaaI ACNGT 2 cut(s) 703, 887
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 569, 1203
TasI AATT 2 cut(s) 429, 1007
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 4 cut(s) 463, 571, 691, 800
Tru1I TTAA 2 cut(s) 636, 986
Tru9I TTAA 2 cut(s) 636, 986
TscAI CASTG 3 cut(s) 283, 785, 892
TseFI GTSAC 2 cut(s) 109, 118
TseI GCWGC 3 cut(s) 631, 662, 1085
Tsp45I GTSAC 2 cut(s) 109, 118
TspDTI ATGAA 5 cut(s) 71, 704, 942, 1203, 1319
TspRI CASTG 3 cut(s) 283, 785, 892
Van91I CCANNNNNTGG 1 cut(s) 604
VpaK11BI GGWCC 2 cut(s) 232, 707
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 110, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 1031
XmiI GTMKAC 1 cut(s) 1130
XspI CTAG 3 cut(s) 63, 74, 164
Zsp2I ATGCAT 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.