Rroxscaffold_4G00289000

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012652
Physical Location & Seq
Forward (+)
9638463 .. 9639086
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289000.1

Sequence Viewer

Length: 513 bp
ATGGCTTTGACGATGGAGTCAAACCCGACAATGACCCGAGACCACATCATGTCCGAATTTGAAGCGGGCGGGATCACAATCATCAACGCTTTGATTGAGAAGATCTCCAAATCCGATGAGCATGGCCCTATCACCTTCTTAATCTACACCATCCTCCTCCCTTGGGCTGCTGAAGTTGCCGGTAGTTTTGGTATAGCTTATGCGTATCTATGCATATTATCCACCACTTCATTTGCAATTTGCCACCATTACTTCAAAGATTACTATAAGAATCGAGAACACTACCAAATCTTGGAACGGGATCCCAAATCTTGTGTGTTGCTTAACACCTTTGATGGGTTAGAGGAGGCGATAATCGGAGATATGAGAAGTCATATGAACCTGATTCTTGTTGGTCCCTTGATTCGTTCCAATGATGTTGAAGTTCGTTGCTACTTGTTTGACGAGTGCAGGGACGATTACCTTCGGTGGCTGGACTCAAAGCGATTCTTCGGTGGTCTATGCATCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

170

Amino Acids

19.52

Weight (kDa)

5.16

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 292
AciI CCGC 2 cut(s) 65, 69
AclWI GGATC 3 cut(s) 80, 296, 309
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 1 cut(s) 192
AfiI CCNNNNNNNGG 3 cut(s) 163, 292, 336
AgsI TTSAA 3 cut(s) 62, 256, 422
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 3 cut(s) 80, 296, 309
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 125, 395
AsuHPI GGTGA 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 395
BamHI GGATCC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 154
BccI CCATC 3 cut(s) 7, 158, 329
BcoDI GTCTC 1 cut(s) 33
BglII AGATCT 1 cut(s) 102
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 125, 395
BmiI GGNNCC 2 cut(s) 303, 397
BplI GAGNNNNNCTC 2 cut(s) 89, 121
BsaBI GATNNNNATC 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 292, 336
Bse118I RCCGGY 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 150
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 3 cut(s) 163, 292, 336
BseRI GAGGAG 2 cut(s) 146, 359
BseXI GCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 469
BshFI GGCC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 381, 467
BslI CCNNNNNNNGG 3 cut(s) 163, 292, 336
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 381, 467
BsnI GGCC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 3 cut(s) 72, 102, 301
BspACI CCGC 2 cut(s) 65, 69
BspANI GGCC 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 303, 397
BspPI GGATC 3 cut(s) 80, 296, 309
BspTNI GGTCTC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 3 cut(s) 72, 102, 301
BssT1I CCWWGG 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 67
BstF5I GGATG 1 cut(s) 150
BstKTI GATC 3 cut(s) 75, 105, 304
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 3 cut(s) 72, 102, 301
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 154
BstX2I RGATCY 2 cut(s) 102, 301
BstYI RGATCY 2 cut(s) 102, 301
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 125, 395
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 2 cut(s) 49, 122
CviJI RGCY 5 cut(s) 5, 126, 167, 197, 472
CviKI_1 RGCY 5 cut(s) 5, 126, 167, 197, 472
DpnI GATC 3 cut(s) 74, 104, 303
DpnII GATC 3 cut(s) 72, 102, 301
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 2 cut(s) 215, 506
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 52, 125
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 2 cut(s) 381, 467
FatI CATG 2 cut(s) 48, 121
FauI CCCGC 2 cut(s) 58, 62
FauNDI CATATG 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 180
Hin1II CATG 2 cut(s) 52, 125
HinfI GANTC 6 cut(s) 17, 271, 385, 403, 476, 486
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 55, 115, 359
Hpy188III TCNNGA 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 145, 473
HpyCH4V TGCA 4 cut(s) 213, 236, 450, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92II CATG 2 cut(s) 52, 125
Kzo9I GATC 3 cut(s) 72, 102, 301
LpnPI CCDG 4 cut(s) 193, 395, 436, 458
Lsp1109I GCAGC 1 cut(s) 154
MalI GATC 3 cut(s) 74, 104, 303
MboI GATC 3 cut(s) 72, 102, 301
MboII GAAGA 2 cut(s) 112, 481
MflI RGATCY 2 cut(s) 102, 301
MluCI AATT 2 cut(s) 56, 237
MlyI GAGTC 2 cut(s) 26, 470
MnlI CCTC 4 cut(s) 164, 167, 337, 340
Mph1103I ATGCAT 2 cut(s) 215, 506
MseI TTAA 2 cut(s) 140, 324
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeI CATATG 1 cut(s) 375
NdeII GATC 3 cut(s) 72, 102, 301
NlaIII CATG 2 cut(s) 52, 125
NlaIV GGNNCC 2 cut(s) 303, 397
NsiI ATGCAT 2 cut(s) 215, 506
PfeI GAWTC 4 cut(s) 271, 385, 403, 486
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 2 cut(s) 25, 470
PpsI GAGTC 2 cut(s) 25, 470
PspN4I GGNNCC 2 cut(s) 303, 397
PspPI GGNCC 2 cut(s) 125, 395
PsuI RGATCY 2 cut(s) 102, 301
SaqAI TTAA 2 cut(s) 140, 324
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 3 cut(s) 72, 102, 301
Sau96I GGNCC 2 cut(s) 125, 395
SchI GAGTC 2 cut(s) 26, 470
SetI ASST 5 cut(s) 137, 199, 332, 384, 465
SinI GGWCC 1 cut(s) 395
Sse9I AATT 2 cut(s) 56, 237
SsiI CCGC 2 cut(s) 65, 69
StyI CCWWGG 1 cut(s) 161
TaqI TCGA 1 cut(s) 274
TasI AATT 2 cut(s) 56, 237
TfiI GAWTC 4 cut(s) 271, 385, 403, 486
Tru1I TTAA 2 cut(s) 140, 324
Tru9I TTAA 2 cut(s) 140, 324
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 2 cut(s) 219, 392
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 1 cut(s) 56
Zsp2I ATGCAT 2 cut(s) 215, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.