Rroxscaffold_4G00288990

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012652
Physical Location & Seq
Forward (+)
9631613 .. 9637701
6089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288990.1

Sequence Viewer

Length: 1389 bp
ATGGAGAGTAAGAAGCACCACTTCCTTGTCATCTCCTCCACAGCACAAGGCCATGTGAACCCTAGTCTCCAACTAGCTAAGCGGCTGATAGACATTGGAAGCTCACATGTCACCTTTGTCACCAGGGTCCATGGCCTTGCCCAAATCAAATCCTTACCTTCTCTAGAAGGCTTATCATTTGCTTCGTTCTCCAATGGCTTTGACGATGGAGTTAAACCCAACAATGACCCAGACCACATCATGTCTGAGCTGAAGCGGGCAGGATCACAATCACTCACTGCTTTGATTGAGAAGATCTCCAAATCCGATGAGCATGGCCCTATCACCTTCTTAATCTACACCATCCTCCTCCCTTGGGCTGCTGAAGTTGCCAGTAGTTTTGGTATAGCTTCTGCGTTTCTATGCATATTATCCACCACTTCCTTTGCAATTTGCCACCATTACTTCAAAGATTACTATAAGAATCAGAGTAGCCTTCCATTTCCAAGTTCCATAACAATCGATGGTTTGCCACCCTTTGCTTCTGATGAGCTACCTTCCTATCTCCTACCCACCAGTCCACATGTTTCGATTCTCCCTACCTTGCAGGAACACTACCAAATCTTGGAACAGGATCCCAACTCTTGTGTGCTGCTTAACACCTTTGATGGGTTAGAGGAGGCAGCAATCAGAGAGATGAGAAGTCATATGAATCTGATTACTGTTGGTCCCTTGATTCGTTCCAATGATGTCGAAGTTTGTTGCGACTTGTTTGACAAGTCTGGGGACGATTACCTTCAGTGGCTGGACTCAAAAGCAGATTCTTCTGTGGTTTATGCATCGTTTGGGAGCTTGGCGGTGTTGTCGAGTGGTCAGATGGAAGAGATACTACATGGTTTGGTTGACAGTGGCCTCCCAGTTCTATGGGTTATCCGCAAGTCAGGAAATGAAGGGGGTCAAGAAACTCAAAATCTGATAAACAATACACTAAAGAAGGAACAGGGGTTAATAGTGCCATGGTGTTCACAAGTAGAGGTGCTGAACCACAAGTCAGTTGGGTGTTTTGTGACGCATTGTGGGTGGAACTCTACTATAGAGAGCTTGGCAGCTGGTGTTCCGGTTGTTGGGTGCCCTCATTTTGCAGACCAGACTACAAATGCCAAGCTGGTTGAGGAGCTGTGGGGGACTGGAGTTAGAGCCAGAGAAAATGAAGAGGGAGTGATCAAGCGTGAAGAGATTAAGAGGTGTTTGGAAGTGGTGATGGGGGATGGAGAGAGAGGAGGAGATGAGAAGGAATGCTCAGAAATGGAAAGGTTTGGCTATGAAGGCTGTGAAGGAAGGGTCAGTGGGTCAACAGGGCAGACGAGCTGGGGTTTATGGGTCCGGTCCAAGAAGAGTTTGTGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

462

Amino Acids

50.59

Weight (kDa)

5.23

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 246 - 414 3.4e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1107
AccB7I CCANNNNNTGG 1 cut(s) 604
AciI CCGC 4 cut(s) 82, 256, 836, 913
AclWI GGATC 3 cut(s) 271, 608, 621
AcuI CTGAAG 3 cut(s) 272, 384, 761
AfiI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
AflIII ACRYGT 2 cut(s) 106, 562
AgsI TTSAA 1 cut(s) 448
AjnI CCWGG 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 3 cut(s) 271, 608, 621
AlwNI CAGNNNCTG 1 cut(s) 784
AoxI GGCC 4 cut(s) 49, 133, 316, 889
ApeKI GCWGC 4 cut(s) 359, 631, 662, 1085
AspS9I GGNCC 5 cut(s) 127, 317, 707, 1360, 1365
AsuHPI GGTGA 4 cut(s) 103, 112, 316, 1249
AvaII GGWCC 4 cut(s) 127, 707, 1360, 1365
BaeGI GKGCMC 1 cut(s) 1112
BamHI GGATCC 1 cut(s) 613
BanI GGYRCC 1 cut(s) 1107
BarI GAAGNNNNNNTAC 2 cut(s) 852, 884
BbvI GCAGC 4 cut(s) 346, 618, 674, 1097
BccI CCATC 7 cut(s) 200, 350, 497, 641, 850, 1234, 1241
BciT130I CCWGG 1 cut(s) 124
BclI TGATCA 1 cut(s) 1200
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 3 cut(s) 63, 74, 164
BfmI CTRYAG 1 cut(s) 1071
BglII AGATCT 1 cut(s) 294
BisI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 5 cut(s) 84, 361, 633, 664, 1087
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 4 cut(s) 127, 707, 1360, 1365
BmgT120I GGNCC 5 cut(s) 127, 317, 707, 1360, 1365
BmiI GGNNCC 5 cut(s) 128, 615, 709, 1109, 1361
BmrFI CCNGG 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 890
BmsI GCATC 1 cut(s) 827
BmuI ACTGGG 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpmI CTGGAG 1 cut(s) 1188
Bpu1102I GCTNAGC 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 268
BsaJI CCNNGG 4 cut(s) 123, 130, 353, 995
BsaWI WCCGGW 2 cut(s) 1096, 1362
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
Bse1I ACTGG 4 cut(s) 372, 555, 896, 1171
Bse8I GATNNNNATC 1 cut(s) 268
BseBI CCWGG 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 4 cut(s) 123, 130, 353, 995
BseGI GGATG 2 cut(s) 342, 1252
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
BseMII CTCAG 2 cut(s) 237, 1293
BseNI ACTGG 4 cut(s) 372, 555, 896, 1171
BseRI GAGGAG 6 cut(s) 25, 338, 671, 1166, 1272, 1275
BseSI GKGCMC 1 cut(s) 1112
BseXI GCAGC 4 cut(s) 346, 618, 674, 1097
BseYI CCCAGC 1 cut(s) 1347
BshFI GGCC 4 cut(s) 51, 135, 318, 891
BshNI GGYRCC 1 cut(s) 1107
BshVI ATCGAT 1 cut(s) 501
BsiSI CCGG 2 cut(s) 1097, 1363
BslFI GGGAC 3 cut(s) 693, 779, 1177
BslI CCNNNNNNNGG 4 cut(s) 355, 604, 648, 1103
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 3 cut(s) 693, 779, 1177
BsmI GAATGC 1 cut(s) 1280
BsnI GGCC 4 cut(s) 51, 135, 318, 891
Bsp1286I GDGCHC 1 cut(s) 1112
Bsp143I GATC 4 cut(s) 263, 294, 613, 1200
Bsp1720I GCTNAGC 1 cut(s) 78
Bsp19I CCATGG 2 cut(s) 130, 995
BspACI CCGC 4 cut(s) 82, 256, 836, 913
BspANI GGCC 4 cut(s) 51, 135, 318, 891
BspCNI CTCAG 2 cut(s) 238, 1292
BspDI ATCGAT 1 cut(s) 501
BspLI GGNNCC 5 cut(s) 128, 615, 709, 1109, 1361
BspPI GGATC 3 cut(s) 271, 608, 621
BspT107I GGYRCC 1 cut(s) 1107
BsrI ACTGG 4 cut(s) 372, 555, 896, 1171
BssECI CCNNGG 4 cut(s) 123, 130, 353, 995
BssMI GATC 4 cut(s) 263, 294, 613, 1200
BssT1I CCWWGG 3 cut(s) 130, 353, 995
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 703, 887
Bst6I CTCTTC 4 cut(s) 855, 1185, 1206, 1367
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 78, 246, 1279
BstDSI CCRYGG 2 cut(s) 130, 995
BstF5I GGATG 2 cut(s) 342, 1252
BstKTI GATC 4 cut(s) 266, 297, 616, 1203
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 4 cut(s) 263, 294, 613, 1200
BstMWI GCNNNNNNNGC 2 cut(s) 368, 1305
BstNI CCWGG 1 cut(s) 124
BstNSI RCATGY 2 cut(s) 110, 566
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 1071
BstSLI GKGCMC 1 cut(s) 1112
BstV1I GCAGC 4 cut(s) 346, 618, 674, 1097
BstX2I RGATCY 2 cut(s) 294, 613
BstXI CCANNNNNNTGG 1 cut(s) 903
BstYI RGATCY 2 cut(s) 294, 613
Bsu15I ATCGAT 1 cut(s) 501
BsuRI GGCC 4 cut(s) 51, 135, 318, 891
BsuTUI ATCGAT 1 cut(s) 501
BtgI CCRYGG 2 cut(s) 130, 995
BtsCI GGATG 2 cut(s) 342, 1252
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 4 cut(s) 276, 785, 892, 1330
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 784
Cfr13I GGNCC 5 cut(s) 127, 317, 707, 1360, 1365
ClaI ATCGAT 1 cut(s) 501
CseI GACGC 1 cut(s) 1057
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 8 cut(s) 53, 107, 131, 241, 314, 563, 872, 996
DdeI CTNAG 3 cut(s) 78, 246, 1279
DpnI GATC 4 cut(s) 265, 296, 615, 1202
DpnII GATC 4 cut(s) 263, 294, 613, 1200
Eam1104I CTCTTC 4 cut(s) 855, 1185, 1206, 1367
EarI CTCTTC 4 cut(s) 855, 1185, 1206, 1367
Eco130I CCWWGG 3 cut(s) 130, 353, 995
Eco47I GGWCC 4 cut(s) 127, 707, 1360, 1365
Eco57I CTGAAG 3 cut(s) 272, 384, 761
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 3 cut(s) 130, 353, 995
EcoT22I ATGCAT 2 cut(s) 407, 820
ErhI CCWWGG 3 cut(s) 130, 353, 995
FaeI CATG 8 cut(s) 56, 110, 134, 244, 317, 566, 875, 999
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 3 cut(s) 693, 779, 1177
FatI CATG 8 cut(s) 52, 106, 130, 240, 313, 562, 871, 995
FauI CCCGC 1 cut(s) 249
FauNDI CATATG 1 cut(s) 687
FbaI TGATCA 1 cut(s) 1200
Fnu4HI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
FokI GGATG 2 cut(s) 329, 1259
Fsp4HI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
FspBI CTAG 3 cut(s) 63, 74, 164
GluI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
GsaI CCCAGC 1 cut(s) 1351
GsuI CTGGAG 1 cut(s) 1188
HaeIII GGCC 4 cut(s) 51, 135, 318, 891
HapII CCGG 2 cut(s) 1097, 1363
HgaI GACGC 1 cut(s) 1057
Hin1II CATG 8 cut(s) 56, 110, 134, 244, 317, 566, 875, 999
HincII GTYRAC 2 cut(s) 883, 1332
HindII GTYRAC 2 cut(s) 883, 1332
HinfI GANTC 6 cut(s) 463, 571, 691, 715, 788, 800
HpaII CCGG 2 cut(s) 1097, 1363
HphI GGTGA 4 cut(s) 103, 112, 316, 1249
Hpy166II GTNNAC 5 cut(s) 58, 560, 883, 1004, 1332
Hpy188I TCNGA 9 cut(s) 247, 307, 468, 526, 671, 696, 855, 954, 1282
Hpy188III TCNNGA 3 cut(s) 164, 921, 938
Hpy8I GTNNAC 5 cut(s) 58, 560, 883, 1004, 1332
HpyCH4III ACNGT 2 cut(s) 703, 887
HpyCH4V TGCA 5 cut(s) 405, 428, 586, 818, 1121
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 1305
HpyF3I CTNAG 3 cut(s) 78, 246, 1279
Hsp92II CATG 8 cut(s) 56, 110, 134, 244, 317, 566, 875, 999
Ksp22I TGATCA 1 cut(s) 1200
Kzo9I GATC 4 cut(s) 263, 294, 613, 1200
LmnI GCTCC 2 cut(s) 828, 1153
Lsp1109I GCAGC 4 cut(s) 346, 618, 674, 1097
LweI GCATC 1 cut(s) 827
MaeI CTAG 3 cut(s) 63, 74, 164
MaeIII GTNAC 3 cut(s) 109, 118, 1045
MalI GATC 4 cut(s) 265, 296, 615, 1202
MboI GATC 4 cut(s) 263, 294, 613, 1200
MboII GAAGA 6 cut(s) 304, 795, 872, 1202, 1223, 1384
MflI RGATCY 2 cut(s) 294, 613
MhlI GDGCHC 1 cut(s) 1112
MluCI AATT 1 cut(s) 429
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 1 cut(s) 94
Mph1103I ATGCAT 2 cut(s) 407, 820
MseI TTAA 5 cut(s) 213, 332, 636, 986, 1218
MspA1I CMGCKG 1 cut(s) 1088
MspI CCGG 2 cut(s) 1097, 1363
MspR9I CCNGG 1 cut(s) 124
Mva1269I GAATGC 1 cut(s) 1280
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 368, 1305
NcoI CCATGG 2 cut(s) 130, 995
NdeI CATATG 1 cut(s) 687
NdeII GATC 4 cut(s) 263, 294, 613, 1200
NlaIII CATG 8 cut(s) 56, 110, 134, 244, 317, 566, 875, 999
NlaIV GGNNCC 5 cut(s) 128, 615, 709, 1109, 1361
NmuCI GTSAC 3 cut(s) 109, 118, 1045
NsiI ATGCAT 2 cut(s) 407, 820
NspI RCATGY 2 cut(s) 110, 566
PciI ACATGT 2 cut(s) 106, 562
PctI GAATGC 1 cut(s) 1280
PfeI GAWTC 5 cut(s) 463, 571, 691, 715, 800
PflMI CCANNNNNTGG 1 cut(s) 604
PkrI GCNGC 5 cut(s) 84, 361, 633, 664, 1087
PleI GAGTC 1 cut(s) 782
PpsI GAGTC 1 cut(s) 782
PscI ACATGT 2 cut(s) 106, 562
Psp6I CCWGG 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 1347
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 5 cut(s) 128, 615, 709, 1109, 1361
PspPI GGNCC 5 cut(s) 127, 317, 707, 1360, 1365
PstNI CAGNNNCTG 1 cut(s) 784
PsuI RGATCY 2 cut(s) 294, 613
PvuII CAGCTG 1 cut(s) 1088
SaqAI TTAA 5 cut(s) 213, 332, 636, 986, 1218
SatI GCNGC 5 cut(s) 83, 360, 632, 663, 1086
Sau3AI GATC 4 cut(s) 263, 294, 613, 1200
Sau96I GGNCC 5 cut(s) 127, 317, 707, 1360, 1365
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 1112
SfaNI GCATC 1 cut(s) 827
SfcI CTRYAG 1 cut(s) 1071
SinI GGWCC 4 cut(s) 127, 707, 1360, 1365
Sse9I AATT 1 cut(s) 429
SsiI CCGC 4 cut(s) 82, 256, 836, 913
SspMI CTAG 3 cut(s) 63, 74, 164
StyD4I CCNGG 1 cut(s) 122
StyI CCWWGG 3 cut(s) 130, 353, 995
TaaI ACNGT 2 cut(s) 703, 887
TaqI TCGA 4 cut(s) 501, 569, 732, 845
TasI AATT 1 cut(s) 429
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 5 cut(s) 463, 571, 691, 715, 800
Tru1I TTAA 5 cut(s) 213, 332, 636, 986, 1218
Tru9I TTAA 5 cut(s) 213, 332, 636, 986, 1218
TscAI CASTG 4 cut(s) 283, 785, 892, 1330
TseFI GTSAC 3 cut(s) 109, 118, 1045
TseI GCWGC 4 cut(s) 359, 631, 662, 1085
Tsp45I GTSAC 3 cut(s) 109, 118, 1045
TspDTI ATGAA 4 cut(s) 704, 942, 1203, 1317
TspRI CASTG 4 cut(s) 283, 785, 892, 1330
Van91I CCANNNNNTGG 1 cut(s) 604
VpaK11BI GGWCC 4 cut(s) 127, 707, 1360, 1365
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 110, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 1031
XspI CTAG 3 cut(s) 63, 74, 164
Zsp2I ATGCAT 2 cut(s) 407, 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.