FvH4_7g26541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016397
Physical Location & Seq
Forward (+)
20021088 .. 20022504
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26541.t1

Sequence Viewer

Length: 462 bp
ATGTTCGCCAGAGACGGCAAAATGGACTGGGATGGTATCATTGAAGCAGAAGCAAAGAGGAGGAAATTTCTTGAACTTCATCCAGAAGCTTCTACCAACGATGATCCAGTACTGTTTAGGACCTCCATCGTTCCTTGGTGGGCATGGATAAAGAAATCACATCTCCCAGAGGCTGAGCTGATCAACGGTCGAGCAGCAATGGTTGGGTTCTTCATGGCATATGTAGTAGACGCTTTGACAGGGGTTGGCGTAGTTGGACAAACTGGTAACTTCATATGCAAGGCAGGGTTGTTGGCGACAGTGATTGGTATAATACTGTTCAGGCGGACCGACGATTTCAATAACCTTAAGAAGCTAGCAGATGAGGCTACTTTCTATGATAAGCAGTGGCAAGCTTCTTGGCAAGAAGAAAATCAAAATGGAACGAGTGGCTCTACAGAGAAATCTGGAAGCAAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

154

Amino Acids

17.12

Weight (kDa)

5.71

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26541
malus_domestica MD01G1174500.v1.1
prunus_persica Prupe.2G269900_v2.0.a1
pyrus_communis pycom01g18620
rosa_chinensis RchiOBHm_Chr1g0373221
rosa_laevigata RLG00000026842
rosa_multiflora Rmu_sc0000170.1_g000010 Rmu_sc0003895.1_g000001
rosa_roxburghii Rroxscaffold_4G00284380
rosa_rugosa Rorug01G0376700
rosa_samantha Rh1AG385400 Rh1BG349400 Rh1CG362700 Rh1DG380300
rosa_wichuraiana Rw1G034000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 1 cut(s) 325
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 65
AfaI GTAC 1 cut(s) 111
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 3 cut(s) 44, 74, 340
AluBI AGCT 4 cut(s) 89, 178, 355, 395
AluI AGCT 4 cut(s) 89, 178, 355, 395
Alw26I GTCTC 1 cut(s) 6
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 120, 327
AsuNHI GCTAGC 1 cut(s) 355
AvaII GGWCC 2 cut(s) 120, 327
BbvI GCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 26, 134
BceAI ACGGC 1 cut(s) 31
BclI TGATCA 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 6
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 1 cut(s) 435
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 1 cut(s) 195
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 111
Bme18I GGWCC 2 cut(s) 120, 327
BmgT120I GGNCC 2 cut(s) 120, 327
BmrI ACTGGG 1 cut(s) 37
BmtI GCTAGC 1 cut(s) 359
BmuI ACTGGG 1 cut(s) 37
Bpu1102I GCTNAGC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 134
Bse1I ACTGG 3 cut(s) 32, 107, 268
Bse3DI GCAATG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 2 cut(s) 37, 79
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 3 cut(s) 32, 107, 268
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 6
BsmBI CGTCTC 1 cut(s) 6
Bsp143I GATC 2 cut(s) 103, 180
Bsp1720I GCTNAGC 1 cut(s) 174
BspACI CCGC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 166
BspOI GCTAGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 3 cut(s) 32, 107, 268
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 2 cut(s) 103, 180
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 4 cut(s) 114, 188, 301, 318
BstAFI CTTAAG 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 357, 393
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 2 cut(s) 37, 79
BstKTI GATC 2 cut(s) 106, 183
BstMAI GTCTC 1 cut(s) 6
BstMBI GATC 2 cut(s) 103, 180
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 206
BtsCI GGATG 2 cut(s) 37, 79
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 2 cut(s) 306, 392
Cac8I GCNNGC 2 cut(s) 357, 393
CaiI CAGNNNCTG 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 120, 327
CpoI CGGWCCG 1 cut(s) 327
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 110
CspI CGGWCCG 1 cut(s) 327
CviAII CATG 2 cut(s) 144, 214
CviJI RGCY 7 cut(s) 89, 173, 178, 355, 368, 395, 432
CviKI_1 RGCY 7 cut(s) 89, 173, 178, 355, 368, 395, 432
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 105, 182
DpnII GATC 2 cut(s) 103, 180
EciI GGCGGA 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 134
Eco47I GGWCC 2 cut(s) 120, 327
EcoO109I RGGNCCY 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 6
FaeI CATG 2 cut(s) 147, 217
FaiI YATR 8 cut(s) 145, 215, 220, 222, 275, 277, 311, 378
FatI CATG 2 cut(s) 143, 213
FauNDI CATATG 2 cut(s) 220, 275
FbaI TGATCA 1 cut(s) 180
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 2 cut(s) 44, 66
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 1 cut(s) 356
GluI GCNGC 1 cut(s) 195
HgaI GACGC 1 cut(s) 239
Hin1II CATG 2 cut(s) 147, 217
HindIII AAGCTT 2 cut(s) 87, 393
Hpy166II GTNNAC 1 cut(s) 229
Hpy188III TCNNGA 3 cut(s) 71, 83, 447
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 335
HpyCH4III ACNGT 4 cut(s) 114, 188, 301, 318
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 147, 217
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 2 cut(s) 103, 180
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 266
MalI GATC 2 cut(s) 105, 182
MboI GATC 2 cut(s) 103, 180
MboII GAAGA 2 cut(s) 202, 419
MluCI AATT 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 5 cut(s) 51, 54, 133, 163, 358
MseI TTAA 1 cut(s) 348
MspCI CTTAAG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeI CATATG 2 cut(s) 220, 275
NdeII GATC 2 cut(s) 103, 180
NheI GCTAGC 1 cut(s) 355
NlaIII CATG 2 cut(s) 147, 217
PkrI GCNGC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 120
PspPI GGNCC 2 cut(s) 120, 327
PspPPI RGGWCCY 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
Rsr2I CGGWCCG 1 cut(s) 327
RsrII CGGWCCG 1 cut(s) 327
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 103, 180
Sau96I GGNCC 2 cut(s) 120, 327
ScaI AGTACT 1 cut(s) 111
SetI ASST 6 cut(s) 91, 125, 180, 348, 357, 397
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 2 cut(s) 120, 327
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 1 cut(s) 65
SsiI CCGC 1 cut(s) 325
SspMI CTAG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 4 cut(s) 114, 188, 301, 318
TaqI TCGA 1 cut(s) 190
TaqII GACCGA 1 cut(s) 344
TasI AATT 1 cut(s) 65
TatI WGTACW 1 cut(s) 109
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 2 cut(s) 306, 392
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 3 cut(s) 68, 202, 262
TspRI CASTG 2 cut(s) 306, 392
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 120, 327
XapI RAATTY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.