Rh1AG385400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016397
Physical Location & Seq
Forward (+)
61603699 .. 61605053
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG385400.1

Sequence Viewer

Length: 777 bp
ATGGCTTCCATTGCCATTTCTGCTTCATTGCAAATAGTGTGTGGCTCTGGTTCACAACATGTAACCAAGAAACAACAGCCCCAGGCCAGACCGGCTCGCGCTCTGGGGATTAAAGAGGCCACCAATGTTGTTCCTCTCAATGTTGAAGCGCAGAATGGTTTCAAATTAGCAGAACAGGAGAAGTCCACTTCCCCAGTAGATAGGCCAGAGGCAGAGGGTGGTGCTGACTATAAATCGAAGCACGCTTTGGATACAGAATCTTCTGCTCTCAAATTCAGTGATGAGAGGTGGAAGAAGGGCACATGGGATTTGAATATGTTCACCAAAGATGGCAAGATGGACTGGGATGGCATCATTGTAGCAGAAGCAAAGAGGAGGAAATTTCACGAACTTCATCCAGAAGCTTCTACCAACGACGATCCAGTACTGTTTAGGACCTCCATCGTTCCTTGGTGGGCATGGATAAAGAAATCATATCTCCCAGAGGCTGAGCTGCTCAACGGTCGAGCAGCAATGGTTGGGTTCTTCATGGCATATGTTGTAGATGTTTTGACTGGGGTTGGCGTAGTCGGACAAACCGGTAACTTCATATGCAAGGCAGGTCTCTTGGCGACAGTGATTGGTATAATACTGTTCAGGCGGACGGAAGATTTCGAGAACCTTAAGAAGCTAGCTGATGAGGCTACTTTCTATGATAAGCAATGGCAAGCTTCTTGGCAAGAACAAAATCAAAATGCAACGAGTGGCTCTACAGAGAAAACTGGAAACAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

258

Amino Acids

28.57

Weight (kDa)

6.92

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26541
malus_domestica MD01G1174500.v1.1
prunus_persica Prupe.2G269900_v2.0.a1
pyrus_communis pycom01g18620
rosa_chinensis RchiOBHm_Chr1g0373221
rosa_laevigata RLG00000026842
rosa_multiflora Rmu_sc0000170.1_g000010 Rmu_sc0003895.1_g000001
rosa_roxburghii Rroxscaffold_4G00284380
rosa_rugosa Rorug01G0376700
rosa_samantha Rh1AG385400 Rh1BG349400 Rh1CG362700 Rh1DG380300
rosa_wichuraiana Rw1G034000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 590
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 640
AclWI GGATC 1 cut(s) 413
AcsI RAATTY 2 cut(s) 272, 380
AfaI GTAC 1 cut(s) 426
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 58
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 3 cut(s) 146, 163, 313
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 5 cut(s) 404, 493, 670, 674, 710
AluI AGCT 5 cut(s) 404, 493, 670, 674, 710
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 1 cut(s) 413
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 3 cut(s) 84, 117, 203
ApeKI GCWGC 2 cut(s) 493, 509
ApoI RAATTY 2 cut(s) 272, 380
AsiGI ACCGGT 1 cut(s) 578
Asp700I GAANNNNTTC 2 cut(s) 158, 317
AspLEI GCGC 2 cut(s) 101, 151
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 670
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 480, 521
BccI CCATC 4 cut(s) 323, 331, 341, 449
BciT130I CCWGG 1 cut(s) 83
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 1 cut(s) 671
BfmI CTRYAG 1 cut(s) 750
BfrI CTTAAG 1 cut(s) 662
BfuAI ACCTGC 1 cut(s) 590
BfuI GTATCC 1 cut(s) 244
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 2 cut(s) 494, 510
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 2 cut(s) 495, 511
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 435
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 3 cut(s) 188, 352, 564
BmsI GCATC 1 cut(s) 360
BmtI GCTAGC 1 cut(s) 674
BmuI ACTGGG 3 cut(s) 188, 352, 564
Bpu1102I GCTNAGC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 2 cut(s) 81, 449
BsaWI WCCGGW 1 cut(s) 578
Bse118I RCCGGY 2 cut(s) 91, 578
Bse1I ACTGG 5 cut(s) 194, 347, 422, 559, 766
Bse3DI GCAATG 4 cut(s) 9, 26, 519, 707
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 81, 449
BseGI GGATG 2 cut(s) 352, 394
BseMI GCAATG 4 cut(s) 9, 26, 519, 707
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 5 cut(s) 194, 347, 422, 559, 766
BseRI GAGGAG 1 cut(s) 388
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 2 cut(s) 480, 521
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 505
BshFI GGCC 3 cut(s) 86, 119, 205
BshTI ACCGGT 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 505
BsiSI CCGG 2 cut(s) 92, 579
BsmAI GTCTC 1 cut(s) 608
BsnI GGCC 3 cut(s) 86, 119, 205
Bso31I GGTCTC 1 cut(s) 608
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 418
Bsp1720I GCTNAGC 1 cut(s) 489
BspACI CCGC 1 cut(s) 640
BspANI GGCC 3 cut(s) 86, 119, 205
BspCNI CTCAG 1 cut(s) 481
BspFNI CGCG 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 590
BspOI GCTAGC 1 cut(s) 674
BspPI GGATC 1 cut(s) 413
BspTI CTTAAG 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 608
BsrDI GCAATG 4 cut(s) 9, 26, 519, 707
BsrFI RCCGGY 2 cut(s) 91, 578
BsrI ACTGG 5 cut(s) 194, 347, 422, 559, 766
BssAI RCCGGY 2 cut(s) 91, 578
BssECI CCNNGG 2 cut(s) 81, 449
BssMI GATC 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 449
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 4 cut(s) 429, 503, 616, 633
BstAFI CTTAAG 1 cut(s) 662
BstC8I GCNNGC 4 cut(s) 97, 243, 672, 708
BstDEI CTNAG 1 cut(s) 489
BstF5I GGATG 2 cut(s) 352, 394
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 2 cut(s) 101, 151
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 1 cut(s) 418
BstMCI CGRYCG 1 cut(s) 505
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 680
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 480, 521
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 3 cut(s) 86, 119, 205
BtsCI GGATG 2 cut(s) 352, 394
BtsIMutI CAGTG 2 cut(s) 283, 621
BveI ACCTGC 1 cut(s) 590
Cac8I GCNNGC 4 cut(s) 97, 243, 672, 708
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 2 cut(s) 101, 151
Cfr10I RCCGGY 2 cut(s) 91, 578
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 1 cut(s) 425
CspAI ACCGGT 1 cut(s) 578
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 4 cut(s) 59, 303, 459, 529
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 1 cut(s) 489
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
EciI GGCGGA 1 cut(s) 655
Eco130I CCWWGG 1 cut(s) 449
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 4 cut(s) 62, 306, 462, 532
FatI CATG 4 cut(s) 58, 302, 458, 528
FauNDI CATATG 2 cut(s) 535, 590
Fnu4HI GCNGC 2 cut(s) 494, 510
FokI GGATG 2 cut(s) 359, 381
Fsp4HI GCNGC 2 cut(s) 494, 510
FspBI CTAG 1 cut(s) 671
GlaI GCGC 2 cut(s) 100, 150
GluI GCNGC 2 cut(s) 494, 510
HaeIII GGCC 3 cut(s) 86, 119, 205
HapII CCGG 2 cut(s) 92, 579
HhaI GCGC 2 cut(s) 101, 151
Hin1II CATG 4 cut(s) 62, 306, 462, 532
Hin6I GCGC 2 cut(s) 99, 149
HinP1I GCGC 2 cut(s) 99, 149
HindIII AAGCTT 2 cut(s) 402, 708
HinfI GANTC 1 cut(s) 257
HpaII CCGG 2 cut(s) 92, 579
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 53, 186, 321
Hpy188I TCNGA 1 cut(s) 572
Hpy188III TCNNGA 3 cut(s) 386, 398, 655
Hpy8I GTNNAC 3 cut(s) 53, 186, 321
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 4 cut(s) 429, 503, 616, 633
HpyCH4V TGCA 3 cut(s) 31, 594, 737
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 680
HpyF3I CTNAG 1 cut(s) 489
Hsp92II CATG 4 cut(s) 62, 306, 462, 532
HspAI GCGC 2 cut(s) 99, 149
Kzo9I GATC 1 cut(s) 418
Lsp1109I GCAGC 2 cut(s) 480, 521
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 671
MaeIII GTNAC 2 cut(s) 61, 581
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 4 cut(s) 252, 304, 517, 659
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 3 cut(s) 164, 272, 380
MmeI TCCRAC 1 cut(s) 550
MroXI GAANNNNTTC 2 cut(s) 158, 317
MseI TTAA 3 cut(s) 111, 663, 775
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 2 cut(s) 92, 579
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 680
NdeI CATATG 2 cut(s) 535, 590
NdeII GATC 1 cut(s) 418
NheI GCTAGC 1 cut(s) 670
NlaIII CATG 4 cut(s) 62, 306, 462, 532
NspI RCATGY 1 cut(s) 62
PciI ACATGT 1 cut(s) 58
PdmI GAANNNNTTC 2 cut(s) 158, 317
PfeI GAWTC 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 2 cut(s) 495, 511
PpuMI RGGWCCY 1 cut(s) 435
PscI ACATGT 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspPI GGNCC 1 cut(s) 435
PspPPI RGGWCCY 1 cut(s) 435
PstNI CAGNNNCTG 1 cut(s) 488
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SaqAI TTAA 3 cut(s) 111, 663, 775
SatI GCNGC 2 cut(s) 494, 510
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 1 cut(s) 435
ScaI AGTACT 1 cut(s) 426
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 302
SetI ASST 9 cut(s) 290, 406, 440, 495, 604, 663, 672, 676, 712
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 750
SinI GGWCC 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
Sse9I AATT 3 cut(s) 164, 272, 380
SsiI CCGC 1 cut(s) 640
SspMI CTAG 1 cut(s) 671
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 4 cut(s) 429, 503, 616, 633
TaqI TCGA 3 cut(s) 236, 505, 654
TasI AATT 3 cut(s) 164, 272, 380
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 3 cut(s) 111, 663, 775
Tru9I TTAA 3 cut(s) 111, 663, 775
TscAI CASTG 2 cut(s) 283, 621
TseI GCWGC 2 cut(s) 493, 509
TspDTI ATGAA 4 cut(s) 15, 383, 517, 577
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 2 cut(s) 283, 621
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 435
XapI RAATTY 2 cut(s) 272, 380
XceI RCATGY 1 cut(s) 62
XmnI GAANNNNTTC 2 cut(s) 158, 317
XspI CTAG 1 cut(s) 671
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.