Prupe.2G269900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016397
Physical Location & Seq
Forward (+)
27437033 .. 27438614
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G269900.1

Sequence Viewer

Length: 771 bp
ATGGCTTCCTTGGCCATTTCTGCTTCATTGCAAACAGTTTGCAGCTCACGTCAAGCCACTAAGAAACAACAGCCAAAATCCAGACCAGCTGCTCGCTCTTTGGGGACAAAAGAGGCCACCCATCATGTTGTTGCGCTGGATGTGAAAGCTCAAAATGGTTTAAACATAGAGAAGCAAGAGAAGTCTGCTTTACGCATCGATAGGCCTGAGGCCGAGGATGCTGCAGACTACAAATCACAGCATGGTTTGGGTACAGAATTGCCTGTTGTGAAGTTCAACGACGAGCGGTGGAAGAATGGGACGTGGGATCTAAATATGTTTTCCAAGGATGGCAAGTTGGACTGGGATGGCATCATTCTAGCAGAAGCAAAGAGGAGGAAGTTTCTTGAGCTTCACCCAGAATCAGCTACCAACGACGACCCGGTTGTGTTTAGGAGCTCCATCATACCATGGTGGGCATGGCTGATGAGATCCTATCTCCCGGAGGCTGAGCTGATCAATGGTCGAGCGGCAATGGTTGGGTTCTTCATGGCATATGTTGTAGATGCTTTGACAGGGCTCGGTGTTGTAGGACAAACTGGCAACTTCATATGCAAGGCAGGGTTCTTTGTGGCAGTCATTGCTATAATATTCATCAGGCGAACCCAAGATTTTGAGAACTTAAAGAAGCTAGCGGATGAAGCTACTTTCTATGACAAACAATGGCAAGCTTCGTGGATAGATCGAAATGCAACAAGTGGCTCTTTAGATCAAACTGGAAAGAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

257

Amino Acids

28.64

Weight (kDa)

8.76

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26541
malus_domestica MD01G1174500.v1.1
prunus_persica Prupe.2G269900_v2.0.a1
pyrus_communis pycom01g18620
rosa_chinensis RchiOBHm_Chr1g0373221
rosa_laevigata RLG00000026842
rosa_multiflora Rmu_sc0000170.1_g000010 Rmu_sc0003895.1_g000001
rosa_roxburghii Rroxscaffold_4G00284380
rosa_rugosa Rorug01G0376700
rosa_samantha Rh1AG385400 Rh1BG349400 Rh1CG362700 Rh1DG380300
rosa_wichuraiana Rw1G034000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 286, 509
AciI CCGC 3 cut(s) 286, 509, 674
AclWI GGATC 2 cut(s) 315, 465
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 1 cut(s) 765
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 1 cut(s) 277
AjiI CACGTC 2 cut(s) 50, 303
Alw21I GWGCWC 1 cut(s) 440
AlwI GGATC 2 cut(s) 315, 465
AoxI GGCC 4 cut(s) 12, 114, 203, 210
ApeKI GCWGC 3 cut(s) 42, 89, 221
ApoI RAATTY 1 cut(s) 765
AspLEI GCGC 1 cut(s) 136
AsuC2I CCSGG 2 cut(s) 422, 482
AsuHPI GGTGA 1 cut(s) 386
AsuNHI GCTAGC 1 cut(s) 670
AxyI CCTNAGG 1 cut(s) 207
BalI TGGCCA 1 cut(s) 14
BanII GRGCYC 2 cut(s) 440, 561
Bbv12I GWGCWC 1 cut(s) 440
BbvI GCAGC 3 cut(s) 54, 76, 208
BccI CCATC 4 cut(s) 129, 323, 341, 449
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BclI TGATCA 1 cut(s) 495
BcnI CCSGG 2 cut(s) 422, 482
BfaI CTAG 2 cut(s) 359, 671
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 4 cut(s) 43, 90, 222, 510
BlpI GCTNAGC 1 cut(s) 489
BlsI GCNGC 4 cut(s) 44, 91, 223, 511
Bme1390I CCNGG 2 cut(s) 422, 482
BmgBI CACGTC 2 cut(s) 50, 303
BmrFI CCNGG 2 cut(s) 422, 482
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 4 cut(s) 204, 208, 360, 535
BmtI GCTAGC 1 cut(s) 674
BmuI ACTGGG 1 cut(s) 352
Bpu1102I GCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 2 cut(s) 422, 482
Bsa29I ATCGAT 1 cut(s) 198
BsaJI CCNNGG 4 cut(s) 9, 213, 324, 449
Bse1I ACTGG 3 cut(s) 347, 583, 760
Bse21I CCTNAGG 1 cut(s) 207
Bse3DI GCAATG 3 cut(s) 26, 519, 618
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 4 cut(s) 9, 213, 324, 449
BseGI GGATG 5 cut(s) 145, 223, 334, 352, 682
BseMI GCAATG 3 cut(s) 26, 519, 618
BseMII CTCAG 2 cut(s) 198, 480
BseNI ACTGG 3 cut(s) 347, 583, 760
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 3 cut(s) 54, 76, 208
BshFI GGCC 4 cut(s) 14, 116, 205, 212
BshVI ATCGAT 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 440
BsiSI CCGG 2 cut(s) 422, 482
BslFI GGGAC 2 cut(s) 118, 313
BsmFI GGGAC 2 cut(s) 118, 313
BsnI GGCC 4 cut(s) 14, 116, 205, 212
Bsp1286I GDGCHC 2 cut(s) 440, 561
Bsp143I GATC 5 cut(s) 307, 470, 495, 721, 748
Bsp1720I GCTNAGC 1 cut(s) 489
Bsp19I CCATGG 1 cut(s) 449
BspACI CCGC 3 cut(s) 286, 509, 674
BspANI GGCC 4 cut(s) 14, 116, 205, 212
BspCNI CTCAG 2 cut(s) 199, 481
BspDI ATCGAT 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 674
BspPI GGATC 2 cut(s) 315, 465
BsrBI CCGCTC 2 cut(s) 286, 509
BsrDI GCAATG 3 cut(s) 26, 519, 618
BsrI ACTGG 3 cut(s) 347, 583, 760
BssECI CCNNGG 4 cut(s) 9, 213, 324, 449
BssMI GATC 5 cut(s) 307, 470, 495, 721, 748
BssT1I CCWWGG 3 cut(s) 9, 324, 449
Bst4CI ACNGT 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 3 cut(s) 94, 672, 708
BstDEI CTNAG 3 cut(s) 60, 207, 489
BstDSI CCRYGG 1 cut(s) 449
BstF5I GGATG 5 cut(s) 145, 223, 334, 352, 682
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 5 cut(s) 310, 473, 498, 724, 751
BstMBI GATC 5 cut(s) 307, 470, 495, 721, 748
BstMWI GCNNNNNNNGC 5 cut(s) 11, 20, 218, 620, 680
BstSCI CCNGG 2 cut(s) 420, 480
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 3 cut(s) 54, 76, 208
BstX2I RGATCY 2 cut(s) 307, 470
BstYI RGATCY 2 cut(s) 307, 470
Bsu15I ATCGAT 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 207
BsuRI GGCC 4 cut(s) 14, 116, 205, 212
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 449
BtrI CACGTC 2 cut(s) 50, 303
BtsCI GGATG 5 cut(s) 145, 223, 334, 352, 682
Cac8I GCNNGC 3 cut(s) 94, 672, 708
CfoI GCGC 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 198
Csp6I GTAC 1 cut(s) 252
CspCI CAANNNNNGTGG 2 cut(s) 695, 730
CviAII CATG 5 cut(s) 125, 242, 450, 459, 529
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 3 cut(s) 60, 207, 489
DpnI GATC 5 cut(s) 309, 472, 497, 723, 750
DpnII GATC 5 cut(s) 307, 470, 495, 721, 748
DraI TTTAAA 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 438
Eco130I CCWWGG 3 cut(s) 9, 324, 449
Eco147I AGGCCT 1 cut(s) 205
Eco24I GRGCYC 2 cut(s) 440, 561
Eco53kI GAGCTC 1 cut(s) 438
Eco81I CCTNAGG 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 438
EcoT14I CCWWGG 3 cut(s) 9, 324, 449
EcoT38I GRGCYC 2 cut(s) 440, 561
ErhI CCWWGG 3 cut(s) 9, 324, 449
FaeI CATG 5 cut(s) 128, 245, 453, 462, 532
FalI AAGNNNNNCTT 2 cut(s) 727, 759
FaqI GGGAC 2 cut(s) 118, 313
FatI CATG 5 cut(s) 124, 241, 449, 458, 528
FauNDI CATATG 2 cut(s) 535, 590
FbaI TGATCA 1 cut(s) 495
Fnu4HI GCNGC 4 cut(s) 43, 90, 222, 510
FokI GGATG 5 cut(s) 152, 230, 341, 359, 689
FriOI GRGCYC 2 cut(s) 440, 561
Fsp4HI GCNGC 4 cut(s) 43, 90, 222, 510
FspBI CTAG 2 cut(s) 359, 671
GlaI GCGC 1 cut(s) 135
GluI GCNGC 4 cut(s) 43, 90, 222, 510
HaeIII GGCC 4 cut(s) 14, 116, 205, 212
HapII CCGG 2 cut(s) 422, 482
HhaI GCGC 1 cut(s) 136
Hin1II CATG 5 cut(s) 128, 245, 453, 462, 532
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 1 cut(s) 401
HpaII CCGG 2 cut(s) 422, 482
HphI GGTGA 1 cut(s) 386
Hpy188III TCNNGA 2 cut(s) 81, 386
Hpy99I CGWCG 2 cut(s) 284, 419
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 2 cut(s) 49, 302
HpyCH4V TGCA 5 cut(s) 31, 42, 224, 594, 731
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 20, 218, 620, 680
HpyF3I CTNAG 3 cut(s) 60, 207, 489
HpySE526I ACGT 2 cut(s) 49, 302
Hsp92II CATG 5 cut(s) 128, 245, 453, 462, 532
HspAI GCGC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 5 cut(s) 307, 470, 495, 721, 748
LmnI GCTCC 2 cut(s) 435, 443
Lsp1109I GCAGC 3 cut(s) 54, 76, 208
LweI GCATC 4 cut(s) 204, 208, 360, 535
MaeI CTAG 2 cut(s) 359, 671
MaeII ACGT 2 cut(s) 49, 302
MalI GATC 5 cut(s) 309, 472, 497, 723, 750
MbiI CCGCTC 2 cut(s) 286, 509
MboI GATC 5 cut(s) 307, 470, 495, 721, 748
MboII GAAGA 2 cut(s) 304, 517
MflI RGATCY 2 cut(s) 307, 470
MhlI GDGCHC 2 cut(s) 440, 561
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 2 cut(s) 257, 765
MluNI TGGCCA 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 6 cut(s) 106, 202, 208, 366, 369, 478
Mox20I TGGCCA 1 cut(s) 14
MscI TGGCCA 1 cut(s) 14
MseI TTAA 3 cut(s) 161, 662, 769
Msp20I TGGCCA 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 2 cut(s) 422, 482
MspR9I CCNGG 2 cut(s) 422, 482
MssI GTTTAAAC 1 cut(s) 162
MwoI GCNNNNNNNGC 5 cut(s) 11, 20, 218, 620, 680
NciI CCSGG 2 cut(s) 422, 482
NcoI CCATGG 1 cut(s) 449
NdeI CATATG 2 cut(s) 535, 590
NdeII GATC 5 cut(s) 307, 470, 495, 721, 748
NheI GCTAGC 1 cut(s) 670
NlaIII CATG 5 cut(s) 128, 245, 453, 462, 532
NmeAIII GCCGAG 1 cut(s) 238
PceI AGGCCT 1 cut(s) 205
PfeI GAWTC 1 cut(s) 401
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 4 cut(s) 44, 91, 223, 511
PmeI GTTTAAAC 1 cut(s) 162
Psp124BI GAGCTC 1 cut(s) 440
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 307, 470
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SacI GAGCTC 1 cut(s) 440
SaqAI TTAA 3 cut(s) 161, 662, 769
SatI GCNGC 4 cut(s) 43, 90, 222, 510
Sau3AI GATC 5 cut(s) 307, 470, 495, 721, 748
ScrFI CCNGG 2 cut(s) 422, 482
SduI GDGCHC 2 cut(s) 440, 561
SfaNI GCATC 4 cut(s) 204, 208, 360, 535
SfcI CTRYAG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 2 cut(s) 257, 765
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 3 cut(s) 286, 509, 674
SspI AATATT 1 cut(s) 630
SspMI CTAG 2 cut(s) 359, 671
SstI GAGCTC 1 cut(s) 440
StuI AGGCCT 1 cut(s) 205
StyD4I CCNGG 2 cut(s) 420, 480
StyI CCWWGG 3 cut(s) 9, 324, 449
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 2 cut(s) 52, 305
TaqI TCGA 3 cut(s) 198, 505, 724
TasI AATT 2 cut(s) 257, 765
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 3 cut(s) 161, 662, 769
Tru9I TTAA 3 cut(s) 161, 662, 769
TseI GCWGC 3 cut(s) 42, 89, 221
TspDTI ATGAA 5 cut(s) 15, 517, 577, 622, 693
XapI RAATTY 1 cut(s) 765
XcmI CCANNNNNNNNNTGG 1 cut(s) 456
XspI CTAG 2 cut(s) 359, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.