Rw1G034000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016397
Physical Location & Seq
Forward (+)
61912294 .. 61913581
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034000.1

Sequence Viewer

Length: 645 bp
ATGGCTTCCATTGCCATTTCTGCTTCATTGCAAATAGTGTGTGGTTCTGGTTCACAACATGTAACCAAGAAACAACAGCCCCAGGCCAGACCGGCTCGTGCCCTGGGGACTAAAGAGGCCACCCATGTTTCTCTCAATGTTGAAGCGCAGAATGAATCTTCTGCTGTCAAATTCAGTGATGAGAGGTGGAAGAAGGGCACATGGGATTTGAATATGTTCACCAAAGATGGCAAGATGGACTGGGATGGTATCATTGTAGCAGAAGCAAAGAGGAGGAAATTTCACGAACTTCATCCAGAAGCTTCTACCAACGACGATCCAGTACTGTTTAGGACCTCCATCGTTCCTTGGTGGGCATGGATAAAGAAATCATATCTCCCAGAGGCTGAGCTGCTCAACGGTCGAGCAGCAATGGTTGGGTTCTTCATGGCATATGTTGTAGATGCTTTGACTAGGGGTCTCTTGGCGACAGTGATTGGTATAATACTGTTCAGGCGGACGGAAGATTTCGACAACCTTAAGAAGCTAGCTGATGAGGCTACTTTCTATGATAAGCAATGGCAAGCTTCTTGGCAGAACAAAATCAAAATGCAACGAGTGGCTCTACAGAGAAAACTGGAAACAAGAGTTAAATTTAATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

214

Amino Acids

24.43

Weight (kDa)

9.59

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26541
malus_domestica MD01G1174500.v1.1
prunus_persica Prupe.2G269900_v2.0.a1
pyrus_communis pycom01g18620
rosa_chinensis RchiOBHm_Chr1g0373221
rosa_laevigata RLG00000026842
rosa_multiflora Rmu_sc0000170.1_g000010 Rmu_sc0003895.1_g000001
rosa_roxburghii Rroxscaffold_4G00284380
rosa_rugosa Rorug01G0376700
rosa_samantha Rh1AG385400 Rh1BG349400 Rh1CG362700 Rh1DG380300
rosa_wichuraiana Rw1G034000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 496
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 3 cut(s) 170, 278, 632
AfaI GTAC 1 cut(s) 324
AflII CTTAAG 1 cut(s) 518
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 2 cut(s) 143, 211
AhdI GACNNNNNGTC 1 cut(s) 456
AjnI CCWGG 2 cut(s) 81, 102
AluBI AGCT 5 cut(s) 302, 391, 526, 530, 566
AluI AGCT 5 cut(s) 302, 391, 526, 530, 566
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 386
AoxI GGCC 2 cut(s) 84, 117
ApeKI GCWGC 2 cut(s) 391, 407
ApoI RAATTY 3 cut(s) 170, 278, 632
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 211
AsuNHI GCTAGC 1 cut(s) 526
AvaII GGWCC 1 cut(s) 333
BaeGI GKGCMC 2 cut(s) 103, 200
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 2 cut(s) 378, 419
BccI CCATC 4 cut(s) 221, 229, 239, 347
BciT130I CCWGG 2 cut(s) 83, 104
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 2 cut(s) 453, 527
BfmI CTRYAG 1 cut(s) 605
BfrI CTTAAG 1 cut(s) 518
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 2 cut(s) 392, 408
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 2 cut(s) 393, 409
BmcAI AGTACT 1 cut(s) 324
Bme1390I CCNGG 2 cut(s) 83, 104
Bme18I GGWCC 1 cut(s) 333
BmeRI GACNNNNNGTC 1 cut(s) 456
BmgT120I GGNCC 1 cut(s) 333
BmrFI CCNGG 2 cut(s) 83, 104
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 433
BmtI GCTAGC 1 cut(s) 530
BmuI ACTGGG 1 cut(s) 250
Bpu1102I GCTNAGC 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 4 cut(s) 81, 102, 103, 347
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 3 cut(s) 245, 320, 621
Bse3DI GCAATG 4 cut(s) 9, 26, 417, 563
BseBI CCWGG 2 cut(s) 83, 104
BseDI CCNNGG 4 cut(s) 81, 102, 103, 347
BseGI GGATG 2 cut(s) 250, 292
BseMI GCAATG 4 cut(s) 9, 26, 417, 563
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 3 cut(s) 245, 320, 621
BseRI GAGGAG 1 cut(s) 286
BseSI GKGCMC 2 cut(s) 103, 200
BseXI GCAGC 2 cut(s) 378, 419
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 2 cut(s) 86, 119
BsiEI CGRYCG 1 cut(s) 403
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 2 cut(s) 86, 119
Bso31I GGTCTC 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 103, 200
Bsp143I GATC 1 cut(s) 316
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 1 cut(s) 496
BspANI GGCC 2 cut(s) 86, 119
BspCNI CTCAG 1 cut(s) 379
BspOI GCTAGC 1 cut(s) 530
BspPI GGATC 1 cut(s) 311
BspTI CTTAAG 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 4 cut(s) 9, 26, 417, 563
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 3 cut(s) 245, 320, 621
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 4 cut(s) 81, 102, 103, 347
BssMI GATC 1 cut(s) 316
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 347
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 83, 104
Bst4CI ACNGT 4 cut(s) 327, 401, 472, 489
BstAFI CTTAAG 1 cut(s) 518
BstC8I GCNNGC 2 cut(s) 528, 564
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 2 cut(s) 250, 292
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 1 cut(s) 319
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 1 cut(s) 316
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 536
BstNI CCWGG 2 cut(s) 83, 104
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 81, 102
BstSFI CTRYAG 1 cut(s) 605
BstSLI GKGCMC 2 cut(s) 103, 200
BstV1I GCAGC 2 cut(s) 378, 419
BsuRI GGCC 2 cut(s) 86, 119
BtsCI GGATG 2 cut(s) 250, 292
BtsIMutI CAGTG 2 cut(s) 181, 477
Cac8I GCNNGC 2 cut(s) 528, 564
CaiI CAGNNNCTG 1 cut(s) 386
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 323
CviAII CATG 5 cut(s) 59, 125, 201, 357, 427
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 1 cut(s) 387
DpnI GATC 1 cut(s) 318
DpnII GATC 1 cut(s) 316
DriI GACNNNNNGTC 1 cut(s) 456
Eam1105I GACNNNNNGTC 1 cut(s) 456
EciI GGCGGA 1 cut(s) 511
Eco130I CCWWGG 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 333
EcoRII CCWGG 2 cut(s) 81, 102
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 5 cut(s) 62, 128, 204, 360, 430
FaqI GGGAC 1 cut(s) 121
FatI CATG 5 cut(s) 58, 124, 200, 356, 426
FauNDI CATATG 1 cut(s) 433
Fnu4HI GCNGC 2 cut(s) 392, 408
FokI GGATG 2 cut(s) 257, 279
Fsp4HI GCNGC 2 cut(s) 392, 408
FspBI CTAG 2 cut(s) 453, 527
GlaI GCGC 1 cut(s) 147
GluI GCNGC 2 cut(s) 392, 408
HaeIII GGCC 2 cut(s) 86, 119
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 148
Hin1II CATG 5 cut(s) 62, 128, 204, 360, 430
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HindIII AAGCTT 2 cut(s) 300, 564
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 2 cut(s) 53, 219
Hpy188III TCNNGA 2 cut(s) 284, 296
Hpy8I GTNNAC 2 cut(s) 53, 219
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 4 cut(s) 327, 401, 472, 489
HpyCH4V TGCA 2 cut(s) 31, 592
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 536
HpyF3I CTNAG 1 cut(s) 387
Hsp92II CATG 5 cut(s) 62, 128, 204, 360, 430
HspAI GCGC 1 cut(s) 146
Kzo9I GATC 1 cut(s) 316
Lsp1109I GCAGC 2 cut(s) 378, 419
LweI GCATC 1 cut(s) 433
MaeI CTAG 2 cut(s) 453, 527
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 318
MboI GATC 1 cut(s) 316
MboII GAAGA 4 cut(s) 150, 202, 415, 515
MhlI GDGCHC 2 cut(s) 103, 200
MluCI AATT 4 cut(s) 170, 278, 632, 637
MnlI CCTC 7 cut(s) 109, 177, 264, 267, 346, 376, 529
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 3 cut(s) 519, 630, 636
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 83, 104
MvaI CCWGG 2 cut(s) 83, 104
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 536
NdeI CATATG 1 cut(s) 433
NdeII GATC 1 cut(s) 316
NheI GCTAGC 1 cut(s) 526
NlaIII CATG 5 cut(s) 62, 128, 204, 360, 430
NspI RCATGY 1 cut(s) 62
PasI CCCWGGG 1 cut(s) 103
PciI ACATGT 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 393, 409
PpuMI RGGWCCY 1 cut(s) 333
PscI ACATGT 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 81, 102
PspGI CCWGG 2 cut(s) 81, 102
PspPI GGNCC 1 cut(s) 333
PspPPI RGGWCCY 1 cut(s) 333
PstNI CAGNNNCTG 1 cut(s) 386
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 3 cut(s) 519, 630, 636
SatI GCNGC 2 cut(s) 392, 408
Sau3AI GATC 1 cut(s) 316
Sau96I GGNCC 1 cut(s) 333
ScaI AGTACT 1 cut(s) 324
ScrFI CCNGG 2 cut(s) 83, 104
SduI GDGCHC 2 cut(s) 103, 200
SetI ASST 8 cut(s) 188, 304, 338, 393, 519, 528, 532, 568
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 605
SinI GGWCC 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 4 cut(s) 170, 278, 632, 637
SsiI CCGC 1 cut(s) 496
SspMI CTAG 2 cut(s) 453, 527
StyD4I CCNGG 2 cut(s) 81, 102
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 4 cut(s) 327, 401, 472, 489
TaqI TCGA 2 cut(s) 403, 510
TasI AATT 4 cut(s) 170, 278, 632, 637
TatI WGTACW 1 cut(s) 322
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 3 cut(s) 519, 630, 636
Tru9I TTAA 3 cut(s) 519, 630, 636
TscAI CASTG 2 cut(s) 181, 477
TseI GCWGC 2 cut(s) 391, 407
TspDTI ATGAA 4 cut(s) 15, 168, 281, 415
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 2 cut(s) 181, 477
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 3 cut(s) 170, 278, 632
XceI RCATGY 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 2 cut(s) 453, 527
ZrmI AGTACT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.