RLG00000026842

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016397
Physical Location & Seq
Reverse (-)
6471716 .. 6473008
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026842

Sequence Viewer

Length: 801 bp
ATGGCTTCCATTGCCATTTCTGCTTCATTGCAAATAGTGTGTGGCTCTGGTTCACAACATGTAACCAAGAAACAACAGCCCCAGGCCAGACCGGCTCGCTCTCTGGGGACAAAAGAGGCCACCCCTGTTGTTTCTCTGAATGTGGTAGGTCAAAGTGGTTTCAAATTAGCAGAAGAGAAGTCCGCTTCACATGTAGATAGGCCAAAGTCCACTTCCCCTGTAGATAGGCCAGAGGCAGAGGGTGGTGCCGACTATAAATCGAAGCACGCTTTGGATACAGAATCTTCTGCTGTCAAATTCAGTGATGAGAGGTGGAAGAAGGGCACATGGGATTTGAATATGTTCTCCAAAGATGGCAAGATGGACTGGGATGGTATCATTGTAGCAGAAGCAAAGAGGAGGAAATTTCTCGAACTTCATCCAGAAGCTTCTACCAACGACGATCCAGTACTGTTTAAGACCTCCGTCGTTCCTTGGTGGGCATGGATAAAGAAATCACATCTCCCAGAGGCTGAGCTACTGAACGGTCGAGCAGCAATGGTTGGGTTCTTCATGGCATATGTTGTAGATGCTCTGACAGGGGTTGGCGTAGTCGGACAAACTGGTAACTTCATATGCAAGGCAGGTCTCTTGGCGACAGTGATTGGTATAATACTGTTCAGGCGGACGGAAGATTTTGACGACCTTAATAAGCTAGCTGATGAGGCTACTTTCTATAATAAGCAATGGCAAGCTTCTTGGCAAGAACAAAATCAAAATGCAACGAGTGACTCTACAGAGAAAACTGGAAACAAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

267

Amino Acids

29.21

Weight (kDa)

6.97

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26541
malus_domestica MD01G1174500.v1.1
prunus_persica Prupe.2G269900_v2.0.a1
pyrus_communis pycom01g18620
rosa_chinensis RchiOBHm_Chr1g0373221
rosa_laevigata RLG00000026842
rosa_multiflora Rmu_sc0000170.1_g000010 Rmu_sc0003895.1_g000001
rosa_roxburghii Rroxscaffold_4G00284380
rosa_rugosa Rorug01G0376700
rosa_samantha Rh1AG385400 Rh1BG349400 Rh1CG362700 Rh1DG380300
rosa_wichuraiana Rw1G034000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 2 cut(s) 183, 664
AclWI GGATC 1 cut(s) 437
AcsI RAATTY 2 cut(s) 296, 404
AfaI GTAC 1 cut(s) 450
AflIII ACRYGT 2 cut(s) 58, 190
AgsI TTSAA 2 cut(s) 163, 337
AjnI CCWGG 1 cut(s) 81
AjuI GAANNNNNNNTTGG 4 cut(s) 196, 228, 254, 286
AluBI AGCT 5 cut(s) 428, 517, 694, 698, 734
AluI AGCT 5 cut(s) 428, 517, 694, 698, 734
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 4 cut(s) 84, 117, 200, 227
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 296, 404
Asp700I GAANNNNTTC 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 694
BaeGI GKGCMC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 545
BccI CCATC 3 cut(s) 347, 355, 365
BciT130I CCWGG 1 cut(s) 83
BciVI GTATCC 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 2 cut(s) 219, 774
BfuAI ACCTGC 1 cut(s) 614
BfuI GTATCC 1 cut(s) 268
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 1 cut(s) 534
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 1 cut(s) 535
BmcAI AGTACT 1 cut(s) 450
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 83
BmrI ACTGGG 1 cut(s) 376
BmsI GCATC 1 cut(s) 559
BmtI GCTAGC 1 cut(s) 698
BmuI ACTGGG 1 cut(s) 376
BoxI GACNNNNGTC 1 cut(s) 464
Bpu1102I GCTNAGC 1 cut(s) 513
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 2 cut(s) 81, 473
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 4 cut(s) 371, 446, 607, 790
Bse3DI GCAATG 4 cut(s) 9, 26, 543, 731
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 81, 473
BseGI GGATG 2 cut(s) 376, 418
BseMI GCAATG 4 cut(s) 9, 26, 543, 731
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 4 cut(s) 371, 446, 607, 790
BseRI GAGGAG 1 cut(s) 412
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 1 cut(s) 545
Bsh1285I CGRYCG 1 cut(s) 529
BshFI GGCC 4 cut(s) 86, 119, 202, 229
BshNI GGYRCC 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 529
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 4 cut(s) 86, 119, 202, 229
Bso31I GGTCTC 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 442
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 2 cut(s) 183, 664
BspANI GGCC 4 cut(s) 86, 119, 202, 229
BspCNI CTCAG 1 cut(s) 505
BspLI GGNNCC 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 614
BspOI GCTAGC 1 cut(s) 698
BspPI GGATC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 632
BsrDI GCAATG 4 cut(s) 9, 26, 543, 731
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 4 cut(s) 371, 446, 607, 790
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 81, 473
BssMI GATC 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 4 cut(s) 453, 527, 640, 657
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 4 cut(s) 97, 267, 696, 732
BstDEI CTNAG 1 cut(s) 513
BstF5I GGATG 2 cut(s) 376, 418
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 1 cut(s) 442
BstMCI CGRYCG 1 cut(s) 529
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 704
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 2 cut(s) 62, 194
BstPAI GACNNNNGTC 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 2 cut(s) 219, 774
BstSLI GKGCMC 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 545
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 4 cut(s) 86, 119, 202, 229
BtsCI GGATG 2 cut(s) 376, 418
BtsIMutI CAGTG 2 cut(s) 307, 645
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 4 cut(s) 97, 267, 696, 732
CaiI CAGNNNCTG 1 cut(s) 512
Cfr10I RCCGGY 1 cut(s) 91
Csp6I GTAC 1 cut(s) 449
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviAII CATG 5 cut(s) 59, 191, 327, 483, 553
CviQI GTAC 1 cut(s) 449
DdeI CTNAG 1 cut(s) 513
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 473
Eco31I GGTCTC 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 473
ErhI CCWWGG 1 cut(s) 473
FaeI CATG 5 cut(s) 62, 194, 330, 486, 556
FaqI GGGAC 1 cut(s) 121
FatI CATG 5 cut(s) 58, 190, 326, 482, 552
FauNDI CATATG 2 cut(s) 559, 614
Fnu4HI GCNGC 1 cut(s) 534
FokI GGATG 2 cut(s) 383, 405
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 1 cut(s) 695
GluI GCNGC 1 cut(s) 534
HaeIII GGCC 4 cut(s) 86, 119, 202, 229
HapII CCGG 1 cut(s) 92
Hin1II CATG 5 cut(s) 62, 194, 330, 486, 556
HindIII AAGCTT 2 cut(s) 426, 732
HinfI GANTC 2 cut(s) 281, 770
HpaII CCGG 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 53, 210
Hpy188I TCNGA 3 cut(s) 138, 576, 596
Hpy188III TCNNGA 2 cut(s) 410, 422
Hpy8I GTNNAC 2 cut(s) 53, 210
Hpy99I CGWCG 2 cut(s) 443, 470
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 4 cut(s) 453, 527, 640, 657
HpyCH4V TGCA 3 cut(s) 31, 618, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 704
HpyF3I CTNAG 1 cut(s) 513
Hsp92II CATG 5 cut(s) 62, 194, 330, 486, 556
Kzo9I GATC 1 cut(s) 442
Lsp1109I GCAGC 1 cut(s) 545
LweI GCATC 1 cut(s) 559
MaeI CTAG 1 cut(s) 695
MaeIII GTNAC 3 cut(s) 61, 605, 767
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 5 cut(s) 185, 276, 328, 541, 683
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 3 cut(s) 164, 296, 404
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 1 cut(s) 574
MnlI CCTC 9 cut(s) 109, 226, 232, 303, 390, 393, 472, 502, 697
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 3 cut(s) 456, 687, 799
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 704
NdeI CATATG 2 cut(s) 559, 614
NdeII GATC 1 cut(s) 442
NheI GCTAGC 1 cut(s) 694
NlaIII CATG 5 cut(s) 62, 194, 330, 486, 556
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 767
NspI RCATGY 2 cut(s) 62, 194
PciI ACATGT 2 cut(s) 58, 190
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 1 cut(s) 764
PpsI GAGTC 1 cut(s) 764
PscI ACATGT 2 cut(s) 58, 190
PshAI GACNNNNGTC 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 450
RsaNI GTAC 1 cut(s) 449
SaqAI TTAA 3 cut(s) 456, 687, 799
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 1 cut(s) 442
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 1 cut(s) 559
SfcI CTRYAG 2 cut(s) 219, 774
Sse9I AATT 3 cut(s) 164, 296, 404
SsiI CCGC 2 cut(s) 183, 664
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 473
TaaI ACNGT 4 cut(s) 453, 527, 640, 657
TaqI TCGA 3 cut(s) 260, 411, 529
TasI AATT 3 cut(s) 164, 296, 404
TatI WGTACW 1 cut(s) 448
TfiI GAWTC 1 cut(s) 281
Tru1I TTAA 3 cut(s) 456, 687, 799
Tru9I TTAA 3 cut(s) 456, 687, 799
TscAI CASTG 2 cut(s) 307, 645
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 1 cut(s) 533
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 4 cut(s) 15, 407, 541, 601
TspGWI ACGGA 2 cut(s) 454, 683
TspRI CASTG 2 cut(s) 307, 645
XapI RAATTY 2 cut(s) 296, 404
XceI RCATGY 2 cut(s) 62, 194
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 1 cut(s) 695
ZrmI AGTACT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.