pycom01g18620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016397
Physical Location & Seq
Forward (+)
17530612 .. 17531606
995 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18620.1

Sequence Viewer

Length: 711 bp
ATGGCTTCAATTGCCATTTCTGCTTCACTGCAAACAGTTTGCAGCTCACATCAAGTCACAAAACAGCCCCAATCGAAACCAGGAGCTCGCTCTTTGGGGATGAAAGAAGCAACGTGTGTTGTTGCTCTGAATGTGGAAGCAAATAGTTTGAACGTATCTGCACAAGAGAAATCTGCTTTACGCATCCAAAAACACAAGGCAGAGGATGCTGCTGACTCCAAATCAAAGGATGGTCTCAGGGGCGCAGAGTTGTCCGCTGTGAAATTCAGGGATGAGAGGTGGAAGAATGGGACATGGGATCTGAATATGTTTTCTAAAAATGAAGCAAAAAGGAGGAAGTTCCTTGAGCTTCACCCGGAAGCATCCATGAACGATGACCCGGTAGTGTTTAGGAGCTCCATCATACCATGGTGGGCATGGATGATGAGATCTTATCTCCCGGAGGCTGAGCTGATCAACGGTCGAGCGGCAATGGTGGGATTCTTCATGGCATATGTTGTAGATGCCTTAACGGGGCTCGGGGTTGTGGGGCAAACTGGAAACTTCATCTGCAAGGCAGGGTTTTTCGTGACAGTCATTGCTATAATACTCATTAGGCGAACACAAGATGTCGGAAACCTTAGGAAGCTCGCCGATGAAGCTACCTTCTACGACAAGCAATGGCAAGCTTCGTGGCAACATCAAAACGATCAAACTGGAAAAAAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

237

Amino Acids

26.31

Weight (kDa)

9.36

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26541
malus_domestica MD01G1174500.v1.1
prunus_persica Prupe.2G269900_v2.0.a1
pyrus_communis pycom01g18620
rosa_chinensis RchiOBHm_Chr1g0373221
rosa_laevigata RLG00000026842
rosa_multiflora Rmu_sc0000170.1_g000010 Rmu_sc0003895.1_g000001
rosa_roxburghii Rroxscaffold_4G00284380
rosa_rugosa Rorug01G0376700
rosa_samantha Rh1AG385400 Rh1BG349400 Rh1CG362700 Rh1DG380300
rosa_wichuraiana Rw1G034000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 467
AciI CCGC 2 cut(s) 255, 467
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 513
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 2 cut(s) 9, 151
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 8 cut(s) 45, 86, 349, 396, 451, 628, 641, 668
AluI AGCT 8 cut(s) 45, 86, 349, 396, 451, 628, 641, 668
Alw21I GWGCWC 2 cut(s) 88, 398
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 518
ApeKI GCWGC 2 cut(s) 42, 209
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 1 cut(s) 245
AsuC2I CCSGG 3 cut(s) 356, 380, 440
AsuHPI GGTGA 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 518
AxyI CCTNAGG 1 cut(s) 620
BanII GRGCYC 3 cut(s) 88, 398, 519
Bbv12I GWGCWC 2 cut(s) 88, 398
BbvI GCAGC 2 cut(s) 54, 196
BccI CCATC 2 cut(s) 224, 407
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 453
BcnI CCSGG 3 cut(s) 356, 380, 440
BcoDI GTCTC 1 cut(s) 239
BglII AGATCT 1 cut(s) 428
BisI GCNGC 3 cut(s) 43, 210, 468
BlpI GCTNAGC 1 cut(s) 447
BlsI GCNGC 3 cut(s) 44, 211, 469
Bme1390I CCNGG 4 cut(s) 81, 356, 380, 440
BmeT110I CYCGRG 1 cut(s) 518
BmrFI CCNGG 4 cut(s) 81, 356, 380, 440
BmsI GCATC 4 cut(s) 192, 196, 371, 493
Bpu1102I GCTNAGC 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 3 cut(s) 356, 380, 440
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 407
Bsc4I CCNNNNNNNGG 1 cut(s) 513
Bse1I ACTGG 2 cut(s) 541, 700
Bse21I CCTNAGG 1 cut(s) 620
Bse3DI GCAATG 3 cut(s) 477, 576, 665
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 7 cut(s) 105, 183, 211, 235, 277, 362, 426
BseLI CCNNNNNNNGG 1 cut(s) 513
BseMI GCAATG 3 cut(s) 477, 576, 665
BseMII CTCAG 2 cut(s) 250, 438
BseNI ACTGG 2 cut(s) 541, 700
BseXI GCAGC 2 cut(s) 54, 196
BsgI GTGCAG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 463
BsiEI CGRYCG 1 cut(s) 463
BsiHKAI GWGCWC 2 cut(s) 88, 398
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 3 cut(s) 356, 380, 440
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 513
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 304
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 3 cut(s) 88, 398, 519
Bsp143I GATC 4 cut(s) 298, 428, 453, 688
Bsp1720I GCTNAGC 1 cut(s) 447
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 2 cut(s) 255, 467
BspCNI CTCAG 2 cut(s) 249, 439
BspPI GGATC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 467
BsrDI GCAATG 3 cut(s) 477, 576, 665
BsrI ACTGG 2 cut(s) 541, 700
BssECI CCNNGG 1 cut(s) 407
BssMI GATC 4 cut(s) 298, 428, 453, 688
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 3 cut(s) 37, 461, 574
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 88, 630, 666
BstDEI CTNAG 3 cut(s) 236, 447, 620
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 7 cut(s) 105, 183, 211, 235, 277, 362, 426
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 4 cut(s) 301, 431, 456, 691
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 4 cut(s) 298, 428, 453, 688
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 206, 638
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 4 cut(s) 79, 354, 378, 438
BstV1I GCAGC 2 cut(s) 54, 196
BstX2I RGATCY 2 cut(s) 298, 428
BstYI RGATCY 2 cut(s) 298, 428
Bsu36I CCTNAGG 1 cut(s) 620
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 7 cut(s) 105, 183, 211, 235, 277, 362, 426
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 3 cut(s) 88, 630, 666
CfoI GCGC 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 653, 688
CviAII CATG 5 cut(s) 294, 367, 408, 417, 487
DdeI CTNAG 3 cut(s) 236, 447, 620
DpnI GATC 4 cut(s) 300, 430, 455, 690
DpnII GATC 4 cut(s) 298, 428, 453, 688
Ecl136II GAGCTC 2 cut(s) 86, 396
Eco130I CCWWGG 1 cut(s) 407
Eco24I GRGCYC 3 cut(s) 88, 398, 519
Eco31I GGTCTC 1 cut(s) 239
Eco53kI GAGCTC 2 cut(s) 86, 396
Eco81I CCTNAGG 1 cut(s) 620
Eco88I CYCGRG 1 cut(s) 518
EcoICRI GAGCTC 2 cut(s) 86, 396
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 407
EcoT38I GRGCYC 3 cut(s) 88, 398, 519
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 5 cut(s) 297, 370, 411, 420, 490
FaqI GGGAC 1 cut(s) 304
FatI CATG 5 cut(s) 293, 366, 407, 416, 486
FauNDI CATATG 1 cut(s) 493
FbaI TGATCA 1 cut(s) 453
Fnu4HI GCNGC 3 cut(s) 43, 210, 468
FokI GGATG 7 cut(s) 112, 170, 218, 242, 284, 349, 433
FriOI GRGCYC 3 cut(s) 88, 398, 519
Fsp4HI GCNGC 3 cut(s) 43, 210, 468
GlaI GCGC 1 cut(s) 244
GluI GCNGC 3 cut(s) 43, 210, 468
HapII CCGG 3 cut(s) 356, 380, 440
HhaI GCGC 1 cut(s) 245
Hin1II CATG 5 cut(s) 297, 370, 411, 420, 490
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 666
HinfI GANTC 2 cut(s) 215, 480
HpaII CCGG 3 cut(s) 356, 380, 440
HphI GGTGA 1 cut(s) 344
Hpy188I TCNGA 3 cut(s) 129, 303, 614
Hpy188III TCNNGA 1 cut(s) 568
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 3 cut(s) 37, 461, 574
HpyCH4IV ACGT 2 cut(s) 113, 153
HpyCH4V TGCA 4 cut(s) 31, 42, 161, 552
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 206, 638
HpyF3I CTNAG 3 cut(s) 236, 447, 620
HpySE526I ACGT 2 cut(s) 113, 153
Hsp92II CATG 5 cut(s) 297, 370, 411, 420, 490
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 4 cut(s) 298, 428, 453, 688
LmnI GCTCC 3 cut(s) 83, 393, 401
Lsp1109I GCAGC 2 cut(s) 54, 196
LweI GCATC 4 cut(s) 192, 196, 371, 493
MaeII ACGT 2 cut(s) 113, 153
MaeIII GTNAC 2 cut(s) 55, 568
MalI GATC 4 cut(s) 300, 430, 455, 690
MbiI CCGCTC 1 cut(s) 467
MboI GATC 4 cut(s) 298, 428, 453, 688
MboII GAAGA 2 cut(s) 295, 475
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 2 cut(s) 298, 428
MhlI GDGCHC 3 cut(s) 88, 398, 519
MluCI AATT 2 cut(s) 9, 263
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 4 cut(s) 196, 270, 327, 436
MseI TTAA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 3 cut(s) 356, 380, 440
MspR9I CCNGG 4 cut(s) 81, 356, 380, 440
MunI CAATTG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 206, 638
NciI CCSGG 3 cut(s) 356, 380, 440
NcoI CCATGG 1 cut(s) 407
NdeI CATATG 1 cut(s) 493
NdeII GATC 4 cut(s) 298, 428, 453, 688
NlaIII CATG 5 cut(s) 297, 370, 411, 420, 490
NmuCI GTSAC 2 cut(s) 55, 568
PfeI GAWTC 1 cut(s) 480
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 3 cut(s) 44, 211, 469
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp124BI GAGCTC 2 cut(s) 88, 398
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PsuI RGATCY 2 cut(s) 298, 428
SacI GAGCTC 2 cut(s) 88, 398
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 3 cut(s) 43, 210, 468
Sau3AI GATC 4 cut(s) 298, 428, 453, 688
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 4 cut(s) 81, 356, 380, 440
SduI GDGCHC 3 cut(s) 88, 398, 519
SfaNI GCATC 4 cut(s) 192, 196, 371, 493
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 2 cut(s) 9, 263
SsiI CCGC 2 cut(s) 255, 467
SstI GAGCTC 2 cut(s) 88, 398
StyD4I CCNGG 4 cut(s) 79, 354, 378, 438
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 3 cut(s) 37, 461, 574
TaiI ACGT 2 cut(s) 116, 156
TaqI TCGA 2 cut(s) 74, 463
TasI AATT 2 cut(s) 9, 263
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 2 cut(s) 55, 568
TseI GCWGC 2 cut(s) 42, 209
Tsp45I GTSAC 2 cut(s) 55, 568
TspDTI ATGAA 6 cut(s) 116, 336, 383, 475, 535, 651
TspRI CASTG 1 cut(s) 33
XapI RAATTY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.