Rroxscaffold_4G00284380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016397
Physical Location & Seq
Reverse (-)
6013282 .. 6022186
8905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00284380.1

Sequence Viewer

Length: 888 bp
ATGGCTTCCATTGCCATTTCTGCTTCATTGCAAATAGTGTGTGGCTCTGGTTCACAACATGTAACCAAGAAACAACAGCCCCAGGCCAGACCGGCTCGTGCCCTGGGGACTAAAGAGGCCACCCATGTTTCTCTCAATGTTGAAGCGCAGAATGGTTTCAAATTAGCAGAACAGGAGAAGTCCACTTCCCCTGTAGATAGGCCAGAGGCAGAGGGTGGTGCTGACTATAAATCGAAGCACGCTTTGGATACAGAATCTTCTGCTGTCAAATTCAGTGATGAGAGGTGGAAGAAGGGCACATGGGATTTGAATATGTTCACCAAAGATGGCAAGATGGACTGGGATGGTATCATTGTAGCAGAAGCAAAGAGGAGGAAATTTCTCGAACTTCATCCAGAAGCTTCTACCAACGAGGATCCAGTGCTGTTTAGGACCTCCATCATTCCTTGGTGGGCATGGATAATGAGATCACATCTCCCAGAGGCTGAGCTGATCAACGGTCGAGCAGCAATGGTTGGGTTCTTCATGGCATATGTTGTAGATGCTTTGACAGGGGTTGGCGTAGTCGGACAAACTGGTAACTTCATATGCAAGGCAGGTCTCTTGGCGACGGTGATTGGTATAATACTGTTCAGGCGAACCGAAGATTTTGACAACCTTAAGAAGCTAGCTGATGAGGCTACTTTTTATGATAAGCAATGGCAAGCTTCTTGGAAAGAAGAAAATCAAAATGTAACGAGTGCCTCTACAGAGAAAACAGAAACAAGAGGTACTTTTTCCACCAAATTTCAACAAATTCTATTGGCACTGCAAAAGAAAACAGGAACAGGCTTATTGAAATTCATCCAGAAGCAGCTACCATTTGGAAGCTCCATCTTTCAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

295

Amino Acids

32.76

Weight (kDa)

8.71

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016397)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g26541
malus_domestica MD01G1174500.v1.1
prunus_persica Prupe.2G269900_v2.0.a1
pyrus_communis pycom01g18620
rosa_chinensis RchiOBHm_Chr1g0373221
rosa_laevigata RLG00000026842
rosa_multiflora Rmu_sc0000170.1_g000010 Rmu_sc0003895.1_g000001
rosa_roxburghii Rroxscaffold_4G00284380
rosa_rugosa Rorug01G0376700
rosa_samantha Rh1AG385400 Rh1BG349400 Rh1CG362700 Rh1DG380300
rosa_wichuraiana Rw1G034000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 587
AclWI GGATC 2 cut(s) 410, 423
AcsI RAATTY 5 cut(s) 269, 377, 785, 795, 839
AfaI GTAC 1 cut(s) 772
AflII CTTAAG 1 cut(s) 659
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 6 cut(s) 143, 160, 310, 791, 838, 881
AjnI CCWGG 2 cut(s) 81, 102
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 8 cut(s) 401, 490, 667, 671, 707, 856, 870, 884
AluI AGCT 8 cut(s) 401, 490, 667, 671, 707, 856, 870, 884
Alw26I GTCTC 1 cut(s) 605
AlwI GGATC 2 cut(s) 410, 423
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 3 cut(s) 84, 117, 200
ApeKI GCWGC 2 cut(s) 506, 853
ApoI RAATTY 5 cut(s) 269, 377, 785, 795, 839
Asp700I GAANNNNTTC 2 cut(s) 155, 314
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 310, 625
AsuNHI GCTAGC 1 cut(s) 667
AvaII GGWCC 1 cut(s) 432
BaeGI GKGCMC 2 cut(s) 103, 299
BamHI GGATCC 1 cut(s) 415
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 2 cut(s) 518, 865
BccI CCATC 5 cut(s) 320, 328, 338, 446, 881
BciT130I CCWGG 2 cut(s) 83, 104
BciVI GTATCC 1 cut(s) 241
BclI TGATCA 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 605
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 2 cut(s) 192, 747
BfrI CTTAAG 1 cut(s) 659
BfuAI ACCTGC 1 cut(s) 587
BfuI GTATCC 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 2 cut(s) 507, 854
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 2 cut(s) 508, 855
Bme1390I CCNGG 2 cut(s) 83, 104
Bme18I GGWCC 1 cut(s) 432
BmgT120I GGNCC 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 2 cut(s) 83, 104
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 532
BmtI GCTAGC 1 cut(s) 671
BmuI ACTGGG 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 4 cut(s) 81, 102, 103, 446
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 3 cut(s) 344, 419, 580
Bse3DI GCAATG 4 cut(s) 9, 26, 516, 704
BseBI CCWGG 2 cut(s) 83, 104
BseDI CCNNGG 4 cut(s) 81, 102, 103, 446
BseGI GGATG 3 cut(s) 349, 391, 843
BseMI GCAATG 4 cut(s) 9, 26, 516, 704
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 3 cut(s) 344, 419, 580
BseRI GAGGAG 1 cut(s) 385
BseSI GKGCMC 2 cut(s) 103, 299
BseXI GCAGC 2 cut(s) 518, 865
Bsh1285I CGRYCG 1 cut(s) 502
BshFI GGCC 3 cut(s) 86, 119, 202
BsiEI CGRYCG 1 cut(s) 502
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 605
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 86, 119, 202
Bso31I GGTCTC 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 103, 299
Bsp143I GATC 3 cut(s) 415, 467, 492
Bsp1720I GCTNAGC 1 cut(s) 486
BspANI GGCC 3 cut(s) 86, 119, 202
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 587
BspOI GCTAGC 1 cut(s) 671
BspPI GGATC 2 cut(s) 410, 423
BspTI CTTAAG 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 605
BsrDI GCAATG 4 cut(s) 9, 26, 516, 704
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 3 cut(s) 344, 419, 580
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 4 cut(s) 81, 102, 103, 446
BssMI GATC 3 cut(s) 415, 467, 492
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 446
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 83, 104
Bst4CI ACNGT 3 cut(s) 500, 613, 630
BstAFI CTTAAG 1 cut(s) 659
BstC8I GCNNGC 3 cut(s) 240, 669, 705
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 3 cut(s) 349, 391, 843
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 3 cut(s) 418, 470, 495
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 3 cut(s) 415, 467, 492
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 677
BstNI CCWGG 2 cut(s) 83, 104
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 81, 102
BstSFI CTRYAG 2 cut(s) 192, 747
BstSLI GKGCMC 2 cut(s) 103, 299
BstV1I GCAGC 2 cut(s) 518, 865
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 3 cut(s) 86, 119, 202
BtsCI GGATG 3 cut(s) 349, 391, 843
BtsI GCAGTG 1 cut(s) 806
BtsIMutI CAGTG 3 cut(s) 280, 426, 806
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 3 cut(s) 240, 669, 705
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 771
CviAII CATG 5 cut(s) 59, 125, 300, 456, 526
CviQI GTAC 1 cut(s) 771
DdeI CTNAG 1 cut(s) 486
DpnI GATC 3 cut(s) 417, 469, 494
DpnII GATC 3 cut(s) 415, 467, 492
Eco130I CCWWGG 1 cut(s) 446
Eco31I GGTCTC 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 432
EcoO109I RGGNCCY 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 81, 102
EcoT14I CCWWGG 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 446
FaeI CATG 5 cut(s) 62, 128, 303, 459, 529
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FaqI GGGAC 1 cut(s) 121
FatI CATG 5 cut(s) 58, 124, 299, 455, 525
FauNDI CATATG 2 cut(s) 532, 587
FbaI TGATCA 1 cut(s) 492
Fnu4HI GCNGC 2 cut(s) 507, 854
FokI GGATG 3 cut(s) 356, 378, 830
Fsp4HI GCNGC 2 cut(s) 507, 854
FspBI CTAG 1 cut(s) 668
GlaI GCGC 1 cut(s) 147
GluI GCNGC 2 cut(s) 507, 854
HaeIII GGCC 3 cut(s) 86, 119, 202
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 148
Hin1II CATG 5 cut(s) 62, 128, 303, 459, 529
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HindIII AAGCTT 3 cut(s) 399, 705, 882
HinfI GANTC 1 cut(s) 254
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 310, 625
Hpy166II GTNNAC 3 cut(s) 53, 183, 318
Hpy188I TCNGA 1 cut(s) 569
Hpy188III TCNNGA 3 cut(s) 383, 395, 847
Hpy8I GTNNAC 3 cut(s) 53, 183, 318
Hpy99I CGWCG 1 cut(s) 613
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 3 cut(s) 500, 613, 630
HpyCH4V TGCA 3 cut(s) 31, 591, 811
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 677
HpyF3I CTNAG 1 cut(s) 486
Hsp92II CATG 5 cut(s) 62, 128, 303, 459, 529
HspAI GCGC 1 cut(s) 146
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 3 cut(s) 415, 467, 492
LmnI GCTCC 1 cut(s) 875
Lsp1109I GCAGC 2 cut(s) 518, 865
LweI GCATC 1 cut(s) 532
MaeI CTAG 1 cut(s) 668
MaeIII GTNAC 3 cut(s) 61, 578, 733
MalI GATC 3 cut(s) 417, 469, 494
MboI GATC 3 cut(s) 415, 467, 492
MboII GAAGA 5 cut(s) 249, 301, 514, 656, 731
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 103, 299
MluCI AATT 6 cut(s) 161, 269, 377, 785, 795, 839
MmeI TCCRAC 1 cut(s) 547
MroXI GAANNNNTTC 2 cut(s) 155, 314
MseI TTAA 1 cut(s) 660
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 83, 104
MvaI CCWGG 2 cut(s) 83, 104
MwoI GCNNNNNNNGC 4 cut(s) 11, 20, 92, 677
NdeI CATATG 2 cut(s) 532, 587
NdeII GATC 3 cut(s) 415, 467, 492
NheI GCTAGC 1 cut(s) 667
NlaIII CATG 5 cut(s) 62, 128, 303, 459, 529
NlaIV GGNNCC 1 cut(s) 417
NspI RCATGY 1 cut(s) 62
PasI CCCWGGG 1 cut(s) 103
PciI ACATGT 1 cut(s) 58
PdmI GAANNNNTTC 2 cut(s) 155, 314
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 508, 855
PpuMI RGGWCCY 1 cut(s) 432
PscI ACATGT 1 cut(s) 58
Psp5II RGGWCCY 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 81, 102
PspGI CCWGG 2 cut(s) 81, 102
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 432
PspPPI RGGWCCY 1 cut(s) 432
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 1 cut(s) 772
RsaNI GTAC 1 cut(s) 771
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 2 cut(s) 507, 854
Sau3AI GATC 3 cut(s) 415, 467, 492
Sau96I GGNCC 1 cut(s) 432
ScrFI CCNGG 2 cut(s) 83, 104
SduI GDGCHC 2 cut(s) 103, 299
SfaNI GCATC 1 cut(s) 532
SfcI CTRYAG 2 cut(s) 192, 747
SinI GGWCC 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 6 cut(s) 161, 269, 377, 785, 795, 839
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 2 cut(s) 81, 102
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 3 cut(s) 500, 613, 630
TaqI TCGA 3 cut(s) 233, 384, 502
TasI AATT 6 cut(s) 161, 269, 377, 785, 795, 839
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 3 cut(s) 280, 426, 813
TseI GCWGC 2 cut(s) 506, 853
TspDTI ATGAA 5 cut(s) 15, 380, 514, 574, 832
TspRI CASTG 3 cut(s) 280, 426, 813
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 432
XapI RAATTY 5 cut(s) 269, 377, 785, 795, 839
XceI RCATGY 1 cut(s) 62
XmnI GAANNNNTTC 2 cut(s) 155, 314
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.