FvH4_7g26720

Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006090
Physical Location & Seq
Forward (+)
20129733 .. 20131637
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26720.t1

Sequence Viewer

Length: 852 bp
ATGGAGGCACTGATAGCATCTTACGGAGAAACCTCGTCGGACTCTGACACCGAGTCGCCGGCGCCACCGCCGGAGAAGAAAACATCTCAAGAATCGACTCCGGTTCTTCCTCCGCCGCCTCTCTCACTTCTCGACTCCCCCAATTCATTAGGATTTCTGGACTACTCGGCGAGTCAGGCCAGCAGAGTGAGGAACTTTCCTCATGTGGAAGGCAACTACGCTCTACATGTCTACATTCCAGTTTATATACCGGCGGCACCGAGGAAAGAGATGGCAGTGTTTATGAGGAGGCTGTCATCTGTTGTGCCTGGTCTCCATGCTGTGGATGTTGATGTGCCGCTTGAGGTTTTGTGCAAAGATGAGCACAGGTTTGAGCAGGTGGCGTTAGGGAGGGAGTTTCATATTAGTCTGGGGAGGACTGTGCCGATTCGGGTGCATCAGATTGACTCGTTGGTGGCAATGCTGAAGCAGAAGCTGCAGACTCAGAGGCGTTATTGGATTGATTTTAGCAAGTGGGAGGTTTTTGTTAACGATGATCATACACGCACCTTTGTATCGGTAGAAGTTATCACTGCTGGGTTAGCTGAGATAACAAAGCAGATTCAAGCTGTCAATGAAGTGTATAAGCTTCACAATCTCCCCGAGTTTTACAAGGATCCACGCCCTCATATATCAGTGGCTTGGGCATTAGGCGACACTAGGGAATCCCTAAAGAAAGTGGTCGAAGATGAAAGAAGAAAATCTACTGTTGGGGGGTCATTACAGAAATGTATTTTTACCAGTAGATTCAGTGGCATCGAGTGTAAGATTGGCAACAAAACACATAAAATATGTAAATTTTCTGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HVSL

Protein Analysis

284

Amino Acids

31.93

Weight (kDa)

6.8

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HVSL PF09749 37 - 278 6.9e-58 Uncharacterised conserved protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 1 cut(s) 367
AccB1I GGYRCC 2 cut(s) 61, 256
AccB7I CCANNNNNTGG 1 cut(s) 322
AccI GTMKAC 1 cut(s) 231
AciI CCGC 5 cut(s) 68, 113, 116, 254, 338
AclWI GGATC 2 cut(s) 650, 663
AcsI RAATTY 1 cut(s) 836
AcuI CTGAAG 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 322
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 1 cut(s) 605
AhdI GACNNNNNGTC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 4 cut(s) 475, 584, 608, 628
AluI AGCT 4 cut(s) 475, 584, 608, 628
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 2 cut(s) 650, 663
AlwNI CAGNNNCTG 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 641
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 475
ApoI RAATTY 1 cut(s) 836
AspLEI GCGC 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 641
BaeI ACNNNNGTAYC 2 cut(s) 537, 570
BamHI GGATCC 1 cut(s) 655
BanI GGYRCC 2 cut(s) 61, 256
BarI GAAGNNNNNNTAC 2 cut(s) 727, 759
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 462
BccI CCATC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 699
BfmI CTRYAG 1 cut(s) 476
BfoI RGCGCY 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 4 cut(s) 116, 255, 338, 476
BlsI GCNGC 4 cut(s) 117, 256, 339, 477
Bme1390I CCNGG 1 cut(s) 309
BmeRI GACNNNNNGTC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 641
BmiI GGNNCC 3 cut(s) 63, 258, 657
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 3 cut(s) 26, 445, 804
BpuEI CTTGAG 2 cut(s) 72, 362
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 2 cut(s) 58, 250
Bse1I ACTGG 2 cut(s) 239, 780
Bse3DI GCAATG 1 cut(s) 465
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 2 cut(s) 497, 576
BseNI ACTGG 2 cut(s) 239, 780
BseRI GAGGAG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 462
BseYI CCCAGC 1 cut(s) 575
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 2 cut(s) 61, 256
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 1 cut(s) 641
BsiSI CCGG 4 cut(s) 59, 71, 101, 251
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 317
BsnI GGCC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 641
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 535, 655
BspACI CCGC 5 cut(s) 68, 113, 116, 254, 338
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 496, 577
BspLI GGNNCC 3 cut(s) 63, 258, 657
BspMAI CTGCAG 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 2 cut(s) 650, 663
BspT107I GGYRCC 2 cut(s) 61, 256
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 2 cut(s) 58, 250
BsrI ACTGG 2 cut(s) 239, 780
BssAI RCCGGY 2 cut(s) 58, 250
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 2 cut(s) 535, 655
BssNI GRCGYC 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 421, 748
BstACI GRCGYC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 60, 181
BstDEI CTNAG 2 cut(s) 483, 585
BstF5I GGATG 1 cut(s) 331
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 538, 658
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 535, 655
BstMWI GCNNNNNNNGC 4 cut(s) 14, 176, 475, 581
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 462
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 2 cut(s) 282, 570
BtsIMutI CAGTG 5 cut(s) 8, 282, 570, 681, 796
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 60, 181
CaiI CAGNNNCTG 1 cut(s) 475
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 2 cut(s) 58, 250
CviAII CATG 3 cut(s) 203, 227, 317
CviJI RGCY 7 cut(s) 179, 292, 475, 584, 608, 628, 680
CviKI_1 RGCY 7 cut(s) 179, 292, 475, 584, 608, 628, 680
DdeI CTNAG 2 cut(s) 483, 585
DinI GGCGCC 1 cut(s) 63
DpnI GATC 2 cut(s) 537, 657
DpnII GATC 2 cut(s) 535, 655
DriI GACNNNNNGTC 1 cut(s) 52
Eam1105I GACNNNNNGTC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 641
EcoRII CCWGG 1 cut(s) 307
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
FaeI CATG 3 cut(s) 206, 230, 320
FatI CATG 3 cut(s) 202, 226, 316
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 4 cut(s) 116, 255, 338, 476
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 4 cut(s) 116, 255, 338, 476
FspBI CTAG 1 cut(s) 699
GlaI GCGC 1 cut(s) 63
GluI GCNGC 4 cut(s) 116, 255, 338, 476
GsaI CCCAGC 1 cut(s) 579
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 1 cut(s) 179
HapII CCGG 4 cut(s) 59, 71, 101, 251
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 206, 230, 320
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 626
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 4 cut(s) 59, 71, 101, 251
Hpy166II GTNNAC 2 cut(s) 232, 529
Hpy188I TCNGA 5 cut(s) 40, 46, 441, 486, 844
Hpy188III TCNNGA 3 cut(s) 89, 131, 158
Hpy8I GTNNAC 2 cut(s) 232, 529
Hpy99I CGWCG 1 cut(s) 40
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 421, 748
HpyCH4V TGCA 3 cut(s) 354, 436, 478
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 176, 475, 581
HpyF3I CTNAG 2 cut(s) 483, 585
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 206, 230, 320
HspAI GCGC 1 cut(s) 62
KasI GGCGCC 1 cut(s) 61
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
Ksp22I TGATCA 1 cut(s) 535
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 2 cut(s) 535, 655
Lsp1109I GCAGC 1 cut(s) 462
LweI GCATC 3 cut(s) 26, 445, 804
MaeI CTAG 1 cut(s) 699
MalI GATC 2 cut(s) 537, 657
MboI GATC 2 cut(s) 535, 655
MboII GAAGA 4 cut(s) 88, 98, 737, 747
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 2 cut(s) 142, 836
Mly113I GGCGCC 1 cut(s) 62
MlyI GAGTC 7 cut(s) 35, 62, 91, 128, 181, 440, 475
MmeI TCCRAC 1 cut(s) 18
MreI CGCCGGCG 1 cut(s) 58
MroNI GCCGGC 1 cut(s) 58
MseI TTAA 1 cut(s) 528
MspI CCGG 4 cut(s) 59, 71, 101, 251
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 4 cut(s) 14, 176, 475, 581
NaeI GCCGGC 1 cut(s) 60
NarI GGCGCC 1 cut(s) 62
NdeII GATC 2 cut(s) 535, 655
NgoMIV GCCGGC 1 cut(s) 58
NlaIII CATG 3 cut(s) 206, 230, 320
NlaIV GGNNCC 3 cut(s) 63, 258, 657
NmeAIII GCCGAG 1 cut(s) 146
NspI RCATGY 1 cut(s) 230
PaqCI CACCTGC 1 cut(s) 367
PciI ACATGT 1 cut(s) 226
PdiI GCCGGC 1 cut(s) 60
PfeI GAWTC 5 cut(s) 92, 427, 601, 704, 786
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 4 cut(s) 117, 256, 339, 477
PleI GAGTC 7 cut(s) 35, 61, 91, 128, 180, 440, 475
PluTI GGCGCC 1 cut(s) 65
PpsI GAGTC 7 cut(s) 35, 61, 91, 128, 180, 440, 475
PscI ACATGT 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 575
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 63, 258, 657
PstI CTGCAG 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 655
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 4 cut(s) 116, 255, 338, 476
Sau3AI GATC 2 cut(s) 535, 655
SchI GAGTC 7 cut(s) 35, 62, 91, 128, 181, 440, 475
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 3 cut(s) 26, 445, 804
SfcI CTRYAG 1 cut(s) 476
SfoI GGCGCC 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 58
SmlI CTYRAG 2 cut(s) 87, 341
SmoI CTYRAG 2 cut(s) 87, 341
Sse9I AATT 2 cut(s) 142, 836
SsiI CCGC 5 cut(s) 68, 113, 116, 254, 338
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 1 cut(s) 699
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 421, 748
TaqI TCGA 4 cut(s) 95, 132, 723, 798
TasI AATT 2 cut(s) 142, 836
TauI GCSGC 3 cut(s) 118, 257, 340
TfiI GAWTC 5 cut(s) 92, 427, 601, 704, 786
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 5 cut(s) 15, 282, 577, 681, 796
TseI GCWGC 1 cut(s) 475
TspDTI ATGAA 4 cut(s) 135, 389, 630, 744
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 5 cut(s) 15, 282, 577, 681, 796
Van91I CCANNNNNTGG 1 cut(s) 322
XapI RAATTY 1 cut(s) 836
XceI RCATGY 1 cut(s) 230
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.