Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006090

Physical Location & Seq

Genomic Coordinates Forward (+)

23473487 .. 23474954

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAACAAGCTAGCTTCTCTGGTGCCTGGTCTCCATGCCGTTGACATTGACGTCCCGCTTGACATTCTGCGTAAGGACGAGCATAAACTTGAACAAGTTGCTTTAGGTAGAGAGTTCCATATAAGTCTCGGAAGAACTGTTCCGATTCGGGTGCACCAGATTGATTCCTTGGTGACAATGCTGCGGCAGAAGCTTCAGATTCAGAGGCGGTATTGGATTGATTTTAGCAAGTGGGAGGTTTTTGTTAACGATGATCAGATCCGGACCTTTGTGTCGATCGAAGTCATTGCTGCTGGGTCAGCTGAGATAACAAAGCAGATTCAAGCTGTGAATGAGGTGTATAAGCTTCACAATCTTCCTGAATTTTACAAGGATCCGCGCCCTCACATCTCGGTAGCTTGGGCATTGGGTGACATCAACAATTCCCTGAAGAAAGTGGTTGAAGAAGAAAGACGAATATCTACCATCGGAGGATCGTTACAGAAATGTATTTTTACCAGTAAATTCAATGGTATCGAATGTAGGATTGGTAATAAAACACAAAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HVSL

Protein Analysis

184

Amino Acids

21.02

Weight (kDa)

8.89

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51170 AT5G51170 AT5G51170 AT5G51170
fragaria_vesca	FvH4_7g26720 FvH4_7g26720 FvH4_7g26720
malus_domestica	MD01G1175500.v1.1 MD07G1241800.v1.1 MD07G1243300.v1.1 MD07G1243700.v1.1 MD07G1244900.v1.1 MD07G1245400.v1.1
prunus_persica	Prupe.2G270700_v2.0.a1
pyrus_communis	pycom07g21820 pycom07g21990 pycom07g22010
rosa_chinensis	RchiOBHm_Chr1g0373311
rosa_laevigata	RLG00000026828
rosa_multiflora	Rmu_ssc0000435.1_g000005
rosa_rugosa	Rorug01G0377000
rosa_samantha	Rh1AG386100 Rh1BG350200 Rh1CG363300 Rh1DG381100
rosa_wichuraiana	Rw1G034890 Rw5G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	50, 271
AatII	GACGTC	1 cut(s)	54
AccB1I	GGYRCC	1 cut(s)	22
AccII	CGCG	1 cut(s)	379
AccIII	TCCGGA	1 cut(s)	261
AciI	CCGC	4 cut(s)	56, 184, 208, 377
AclWI	GGATC	4 cut(s)	253, 368, 381, 481
AcsI	RAATTY	2 cut(s)	362, 503
AcuI	CTGAAG	2 cut(s)	179, 449
AcyI	GRCGYC	1 cut(s)	51
AgsI	TTSAA	4 cut(s)	92, 323, 443, 508
AjnI	CCWGG	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
AluBI	AGCT	7 cut(s)	10, 14, 193, 302, 326, 346, 398
AluI	AGCT	7 cut(s)	10, 14, 193, 302, 326, 346, 398
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	2 cut(s)	35, 131
Alw44I	GTGCAC	1 cut(s)	152
AlwI	GGATC	4 cut(s)	253, 368, 381, 481
Aor13HI	TCCGGA	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	152
ApeKI	GCWGC	2 cut(s)	181, 290
ApoI	RAATTY	2 cut(s)	362, 503
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	2 cut(s)	184, 422
AsuNHI	GCTAGC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	168, 277
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	23
BcgI	CGANNNNNNTGC	4 cut(s)	133, 167, 269, 303
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	35, 131
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	3 cut(s)	182, 185, 291
BlsI	GCNGC	3 cut(s)	183, 186, 292
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	24, 375
BmrFI	CCNGG	1 cut(s)	27
BmtI	GCTAGC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	285
BseAI	TCCGGA	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	168
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	498
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	168, 277
BseYI	CCCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	379
Bsh1285I	CGRYCG	1 cut(s)	279
BshNI	GGYRCC	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	35, 131
BsmFI	GGGAC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	253, 258, 276, 373, 473
BspACI	CCGC	4 cut(s)	56, 184, 208, 377
BspCNI	CTCAG	1 cut(s)	295
BspEI	TCCGGA	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	24, 375
BspOI	GCTAGC	1 cut(s)	14
BspPI	GGATC	4 cut(s)	253, 368, 381, 481
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	5 cut(s)	253, 258, 276, 373, 473
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	5 cut(s)	256, 261, 279, 376, 476
BstMAI	GTCTC	2 cut(s)	35, 131
BstMBI	GATC	5 cut(s)	253, 258, 276, 373, 473
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 299
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSLI	GKGCMC	1 cut(s)	156
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	168, 277
BstX2I	RGATCY	2 cut(s)	258, 373
BstYI	RGATCY	2 cut(s)	258, 373
Cac8I	GCNNGC	1 cut(s)	12
CfoI	GCGC	1 cut(s)	381
Cfr13I	GGNCC	1 cut(s)	264
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	7 cut(s)	10, 14, 193, 302, 326, 346, 398
CviKI_1	RGCY	7 cut(s)	10, 14, 193, 302, 326, 346, 398
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	5 cut(s)	255, 260, 278, 375, 475
DpnII	GATC	5 cut(s)	253, 258, 276, 373, 473
DrdI	GACNNNNNNGTC	2 cut(s)	50, 271
DseDI	GACNNNNNNGTC	2 cut(s)	50, 271
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	2 cut(s)	179, 449
EcoRII	CCWGG	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	1 cut(s)	38
FaiI	YATR	6 cut(s)	36, 84, 120, 122, 342, 548
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	34
FauI	CCCGC	1 cut(s)	63
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	3 cut(s)	182, 185, 291
Fsp4HI	GCNGC	3 cut(s)	182, 185, 291
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	3 cut(s)	182, 185, 291
GsaI	CCCAGC	1 cut(s)	297
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	1 cut(s)	381
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	2 cut(s)	43, 247
HindII	GTYRAC	2 cut(s)	43, 247
HindIII	AAGCTT	2 cut(s)	191, 344
HinfI	GANTC	4 cut(s)	145, 164, 199, 319
HpaI	GTTAAC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	2 cut(s)	184, 422
Hpy166II	GTNNAC	3 cut(s)	43, 154, 247
Hpy188I	TCNGA	6 cut(s)	131, 144, 198, 204, 258, 470
Hpy188III	TCNNGA	2 cut(s)	262, 359
Hpy8I	GTNNAC	3 cut(s)	43, 154, 247
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 299
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	379
Kpn2I	TCCGGA	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	253, 258, 276, 373, 473
LpnPI	CCDG	9 cut(s)	5, 12, 39, 170, 275, 279, 372, 440, 511
Lsp1109I	GCAGC	2 cut(s)	168, 277
MaeI	CTAG	1 cut(s)	11
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	3 cut(s)	172, 410, 477
MalI	GATC	5 cut(s)	255, 260, 278, 375, 475
MboI	GATC	5 cut(s)	253, 258, 276, 373, 473
MboII	GAAGA	5 cut(s)	144, 347, 442, 455, 458
MflI	RGATCY	2 cut(s)	258, 373
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	362, 421, 503
MnlI	CCTC	5 cut(s)	198, 229, 328, 393, 464
MroI	TCCGGA	1 cut(s)	261
MseI	TTAA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	2 cut(s)	190, 299
NdeII	GATC	5 cut(s)	253, 258, 276, 373, 473
NheI	GCTAGC	1 cut(s)	10
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	2 cut(s)	24, 375
NmuCI	GTSAC	2 cut(s)	172, 410
PfeI	GAWTC	4 cut(s)	145, 164, 199, 319
PkrI	GCNGC	3 cut(s)	183, 186, 292
Ple19I	CGATCG	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	24, 375
PspPI	GGNCC	1 cut(s)	264
PsuI	RGATCY	2 cut(s)	258, 373
PvuI	CGATCG	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	3 cut(s)	182, 185, 291
Sau3AI	GATC	5 cut(s)	253, 258, 276, 373, 473
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	156
SinI	GGWCC	1 cut(s)	264
Sse9I	AATT	3 cut(s)	362, 421, 503
SsiI	CCGC	4 cut(s)	56, 184, 208, 377
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	3 cut(s)	275, 279, 516
TasI	AATT	3 cut(s)	362, 421, 503
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	4 cut(s)	145, 164, 199, 319
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	172, 410
TseI	GCWGC	2 cut(s)	181, 290
Tsp45I	GTSAC	2 cut(s)	172, 410
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	2 cut(s)	362, 503
XspI	CTAG	1 cut(s)	11
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.