FvH4_7g27480

Luc7-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005092
Physical Location & Seq
Reverse (-)
20514091 .. 20517863
3773 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27480.t4

Sequence Viewer

Length: 1047 bp
ATGGATGCTCAGCGAGCTCTGCTGGACGAGCTTATGGGCGCAGCTCGGAATTTGACGGAGGAAGAGAGGAAAGGGTATAAGGAGGTCACTTGGGACTCCAAGGAGGTTTGCGGAGCTTATATGGTTCGATTTTGCCCTCATGATCTCTTTGTCAACACCCGAAGCGATCTAGGGCCGTGTCCTAAAATACATGACTCCAAGTTGAAAGAGAGTTTTGAGAAGTCTCCAAGGCATGATGCATATGTGCCGAGGTTTGAAGCTGATCTTGCTCAGTTTTGTGACAAATTGGTGATGGATTTGGACAGAAGAGTTAAGCGTGGGCGAGAACGCCTCTCTCAGGAGGTGGAACCTCCACCACCACCACCTCTGTCAGCTGAAAAGGCCGAACAGTTATCTGTTCTAGAGGAAAAAATAAAGAACTTATTGGAACAAGTGGAGGAACTTGGAGCATCTGGGAAGGTGGATGAAGCTGAAGCATTGATGAGAAAGGTGGATGTGCTTAATGTTGAGAAGACAGTCTTGGCTCTACAGCCTCCAAATGCTCAAGCATTAATGGTTCCACAGGAGAAAAAAATGGCACTCTGTGAGATCTGTGGTTCATTTCTTGTGGCCAATGATGCTTTAGAGAGGACTCAGTCTCATGTCACTGGGAAGCAGCATATTGGTTATGGCATGGTCCGGGATTTTATTTCAGAGTACAAGGCAGCGAAGGAGAAAGCAAGGGAAGAAGAAAAGTTAGCTAGGGAGAAAGAAGCAGAAGAACGCAGGAAACAGCAGGAGAAGGAAAGTGAGAGTAGAAGGAGAAGTGGTTCAAGTGATAGGGACAGGTATCGTGATCATGACAGATATCGAGAACGTGACTTGGATCGTGAAAGGTCCAGAGAGTGGAATGGTAGAGGTGGTCAGGATGGTGGAAGAGGGGTGGATTGGAGGTCCAGGAATGGGAGAGATGGAGGCAGGGATAGGTACCGTAATCGAAGCAGGTCACGTTCCCCTATTAGACGTTCCCACAGGAGGTCACCAAGGAGTCCAGTTCGCCCGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LUC7

Protein Analysis

349

Amino Acids

40.39

Weight (kDa)

9.08

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 2 - 250 6.1e-85 LUC7 N_terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 972
Acc65I GGTACC 1 cut(s) 966
AccB1I GGYRCC 1 cut(s) 966
AccB7I CCANNNNNTGG 1 cut(s) 885
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 873
AcoI YGGCCR 1 cut(s) 609
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 492
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 2 cut(s) 698, 968
AfiI CCNNNNNNNGG 4 cut(s) 337, 885, 942, 1014
AgsI TTSAA 3 cut(s) 205, 257, 813
AjnI CCWGG 1 cut(s) 935
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AloI GAACNNNNNNTCC 2 cut(s) 793, 825
AluBI AGCT 8 cut(s) 17, 31, 44, 116, 260, 374, 470, 740
AluI AGCT 8 cut(s) 17, 31, 44, 116, 260, 374, 470, 740
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 228, 642
AlwI GGATC 1 cut(s) 873
AoxI GGCC 3 cut(s) 173, 381, 609
ApeKI GCWGC 3 cut(s) 41, 655, 704
ApoI RAATTY 1 cut(s) 49
AseI ATTAAT 1 cut(s) 551
Asp700I GAANNNNTTC 1 cut(s) 808
Asp718I GGTACC 1 cut(s) 966
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 4 cut(s) 173, 676, 876, 933
AsuC2I CCSGG 1 cut(s) 680
AsuHPI GGTGA 2 cut(s) 301, 1011
AvaII GGWCC 3 cut(s) 676, 876, 933
BalI TGGCCA 1 cut(s) 611
BanI GGYRCC 1 cut(s) 966
BanII GRGCYC 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 53, 667, 716
BccI CCATC 3 cut(s) 286, 902, 944
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 937
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 2 cut(s) 228, 642
BfaI CTAG 3 cut(s) 170, 401, 741
BfmI CTRYAG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 972
BglII AGATCT 1 cut(s) 588
BisI GCNGC 3 cut(s) 42, 656, 705
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 3 cut(s) 43, 657, 706
Bme1390I CCNGG 2 cut(s) 680, 937
Bme18I GGWCC 3 cut(s) 676, 876, 933
BmgT120I GGNCC 4 cut(s) 173, 676, 876, 933
BmiI GGNNCC 3 cut(s) 348, 558, 968
BmrFI CCNGG 2 cut(s) 680, 937
BmrI ACTGGG 1 cut(s) 657
BmsI GCATC 3 cut(s) 226, 458, 607
BmuI ACTGGG 1 cut(s) 657
BpiI GAAGAC 1 cut(s) 518
BplI GAGNNNNNCTC 2 cut(s) 315, 347
Bpu1102I GCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 528
BpuMI CCSGG 1 cut(s) 680
BsaJI CCNNGG 4 cut(s) 99, 227, 248, 1022
BsaXI ACNNNNNCTCC 2 cut(s) 793, 823
Bsc4I CCNNNNNNNGG 4 cut(s) 337, 885, 942, 1014
Bse1I ACTGG 2 cut(s) 652, 1031
BseBI CCWGG 1 cut(s) 937
BseDI CCNNGG 4 cut(s) 99, 227, 248, 1022
BseGI GGATG 4 cut(s) 10, 469, 499, 913
BseLI CCNNNNNNNGG 4 cut(s) 337, 885, 942, 1014
BseMII CTCAG 4 cut(s) 23, 284, 350, 647
BseNI ACTGG 2 cut(s) 652, 1031
BseXI GCAGC 3 cut(s) 53, 667, 716
BshFI GGCC 3 cut(s) 175, 383, 611
BshNI GGYRCC 1 cut(s) 966
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 679
BslFI GGGAC 2 cut(s) 107, 836
BslI CCNNNNNNNGG 4 cut(s) 337, 885, 942, 1014
BsmAI GTCTC 2 cut(s) 228, 642
BsmFI GGGAC 2 cut(s) 107, 836
BsnI GGCC 3 cut(s) 175, 383, 611
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 6 cut(s) 142, 166, 262, 588, 835, 865
Bsp1720I GCTNAGC 1 cut(s) 9
BspACI CCGC 1 cut(s) 111
BspANI GGCC 3 cut(s) 175, 383, 611
BspCNI CTCAG 4 cut(s) 22, 283, 349, 646
BspHI TCATGA 2 cut(s) 139, 838
BspLI GGNNCC 3 cut(s) 348, 558, 968
BspMI ACCTGC 1 cut(s) 972
BspPI GGATC 1 cut(s) 873
BspT107I GGYRCC 1 cut(s) 966
BsrI ACTGG 2 cut(s) 652, 1031
BssECI CCNNGG 4 cut(s) 99, 227, 248, 1022
BssMI GATC 6 cut(s) 142, 166, 262, 588, 835, 865
BssT1I CCWWGG 3 cut(s) 99, 227, 1022
Bst2UI CCWGG 1 cut(s) 937
Bst4CI ACNGT 3 cut(s) 390, 517, 971
Bst6I CTCTTC 3 cut(s) 57, 301, 910
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 4 cut(s) 9, 270, 336, 633
BstEII GGTNACC 1 cut(s) 1017
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 4 cut(s) 10, 469, 499, 913
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 6 cut(s) 145, 169, 265, 591, 838, 868
BstMAI GTCTC 2 cut(s) 228, 642
BstMBI GATC 6 cut(s) 142, 166, 262, 588, 835, 865
BstMWI GCNNNNNNNGC 6 cut(s) 14, 19, 28, 266, 380, 617
BstNI CCWGG 1 cut(s) 937
BstPI GGTNACC 1 cut(s) 1017
BstSCI CCNGG 2 cut(s) 678, 935
BstSFI CTRYAG 1 cut(s) 527
BstV1I GCAGC 3 cut(s) 53, 667, 716
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 588
BstYI RGATCY 1 cut(s) 588
BsuRI GGCC 3 cut(s) 175, 383, 611
BtsCI GGATG 4 cut(s) 10, 469, 499, 913
BtsIMutI CAGTG 1 cut(s) 645
BveI ACCTGC 1 cut(s) 972
Cac8I GCNNGC 1 cut(s) 15
CciI TCATGA 2 cut(s) 139, 838
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 4 cut(s) 173, 676, 876, 933
Csp6I GTAC 2 cut(s) 697, 967
CviAII CATG 6 cut(s) 140, 191, 233, 641, 673, 839
CviQI GTAC 2 cut(s) 697, 967
DdeI CTNAG 4 cut(s) 9, 270, 336, 633
DpnI GATC 6 cut(s) 144, 168, 264, 590, 837, 867
DpnII GATC 6 cut(s) 142, 166, 262, 588, 835, 865
DraIII CACNNNGTG 1 cut(s) 584
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 3 cut(s) 57, 301, 910
EarI CTCTTC 3 cut(s) 57, 301, 910
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 3 cut(s) 99, 227, 1022
Eco24I GRGCYC 1 cut(s) 19
Eco32I GATATC 1 cut(s) 848
Eco47I GGWCC 3 cut(s) 676, 876, 933
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 492
Eco91I GGTNACC 1 cut(s) 1017
EcoICRI GAGCTC 1 cut(s) 17
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 1017
EcoRII CCWGG 1 cut(s) 935
EcoRV GATATC 1 cut(s) 848
EcoT14I CCWWGG 3 cut(s) 99, 227, 1022
EcoT22I ATGCAT 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 3 cut(s) 99, 227, 1022
FaeI CATG 6 cut(s) 143, 194, 236, 644, 676, 842
FalI AAGNNNNNCTT 4 cut(s) 249, 281, 503, 535
FaqI GGGAC 2 cut(s) 107, 836
FatI CATG 6 cut(s) 139, 190, 232, 640, 672, 838
FauNDI CATATG 1 cut(s) 241
FbaI TGATCA 1 cut(s) 835
Fnu4HI GCNGC 3 cut(s) 42, 656, 705
FokI GGATG 4 cut(s) 17, 476, 506, 920
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 3 cut(s) 42, 656, 705
FspBI CTAG 3 cut(s) 170, 401, 741
GlaI GCGC 1 cut(s) 40
GluI GCNGC 3 cut(s) 42, 656, 705
HaeIII GGCC 3 cut(s) 175, 383, 611
HapII CCGG 1 cut(s) 679
HhaI GCGC 1 cut(s) 41
Hin1II CATG 6 cut(s) 143, 194, 236, 644, 676, 842
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 4 cut(s) 95, 194, 631, 1027
HpaII CCGG 1 cut(s) 679
HphI GGTGA 2 cut(s) 301, 1011
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 48, 694
Hpy188III TCNNGA 9 cut(s) 140, 338, 401, 833, 839, 851, 869, 879, 905
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 4 cut(s) 451, 703, 775, 792
HpyCH4III ACNGT 3 cut(s) 390, 517, 971
HpyCH4IV ACGT 3 cut(s) 856, 988, 1003
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 19, 28, 266, 380, 617
HpyF3I CTNAG 4 cut(s) 9, 270, 336, 633
HpySE526I ACGT 3 cut(s) 856, 988, 1003
Hsp92II CATG 6 cut(s) 143, 194, 236, 644, 676, 842
HspAI GCGC 1 cut(s) 39
KpnI GGTACC 1 cut(s) 970
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 6 cut(s) 142, 166, 262, 588, 835, 865
LmnI GCTCC 2 cut(s) 113, 446
Lsp1109I GCAGC 3 cut(s) 53, 667, 716
LweI GCATC 3 cut(s) 226, 458, 607
MaeI CTAG 3 cut(s) 170, 401, 741
MaeII ACGT 3 cut(s) 856, 988, 1003
MaeIII GTNAC 6 cut(s) 85, 278, 643, 857, 984, 1017
MalI GATC 6 cut(s) 144, 168, 264, 590, 837, 867
MboI GATC 6 cut(s) 142, 166, 262, 588, 835, 865
MboII GAAGA 7 cut(s) 74, 318, 523, 737, 740, 770, 927
MflI RGATCY 1 cut(s) 588
MhlI GDGCHC 1 cut(s) 19
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 2 cut(s) 49, 284
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 4 cut(s) 89, 188, 625, 1036
Mox20I TGGCCA 1 cut(s) 611
Mph1103I ATGCAT 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 808
MscI TGGCCA 1 cut(s) 611
MseI TTAA 4 cut(s) 312, 501, 551, 1045
Msp20I TGGCCA 1 cut(s) 611
MspA1I CMGCKG 1 cut(s) 374
MspI CCGG 1 cut(s) 679
MspR9I CCNGG 2 cut(s) 680, 937
MvaI CCWGG 1 cut(s) 937
MwoI GCNNNNNNNGC 6 cut(s) 14, 19, 28, 266, 380, 617
NciI CCSGG 1 cut(s) 680
NdeI CATATG 1 cut(s) 241
NdeII GATC 6 cut(s) 142, 166, 262, 588, 835, 865
NlaIII CATG 6 cut(s) 143, 194, 236, 644, 676, 842
NlaIV GGNNCC 3 cut(s) 348, 558, 968
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 6 cut(s) 85, 278, 643, 857, 984, 1017
NsiI ATGCAT 1 cut(s) 241
PagI TCATGA 2 cut(s) 139, 838
PdmI GAANNNNTTC 1 cut(s) 808
PflFI GACNNNGTC 1 cut(s) 634
PflMI CCANNNNNTGG 1 cut(s) 885
PfoI TCCNGGA 2 cut(s) 678, 935
PkrI GCNGC 3 cut(s) 43, 657, 706
PleI GAGTC 4 cut(s) 89, 188, 625, 1035
PpsI GAGTC 4 cut(s) 89, 188, 625, 1035
PshBI ATTAAT 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 935
PspEI GGTNACC 1 cut(s) 1017
PspGI CCWGG 1 cut(s) 935
PspN4I GGNNCC 3 cut(s) 348, 558, 968
PspPI GGNCC 4 cut(s) 173, 676, 876, 933
PsuI RGATCY 1 cut(s) 588
PsyI GACNNNGTC 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 698, 968
RsaNI GTAC 2 cut(s) 697, 967
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 4 cut(s) 312, 501, 551, 1045
SatI GCNGC 3 cut(s) 42, 656, 705
Sau3AI GATC 6 cut(s) 142, 166, 262, 588, 835, 865
Sau96I GGNCC 4 cut(s) 173, 676, 876, 933
SchI GAGTC 4 cut(s) 89, 188, 625, 1036
ScrFI CCNGG 2 cut(s) 680, 937
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 3 cut(s) 226, 458, 607
SfcI CTRYAG 1 cut(s) 527
SinI GGWCC 3 cut(s) 676, 876, 933
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 2 cut(s) 49, 284
SsiI CCGC 1 cut(s) 111
SspMI CTAG 3 cut(s) 170, 401, 741
SstI GAGCTC 1 cut(s) 19
StyD4I CCNGG 2 cut(s) 678, 935
StyI CCWWGG 3 cut(s) 99, 227, 1022
TaaI ACNGT 3 cut(s) 390, 517, 971
TaiI ACGT 3 cut(s) 859, 991, 1006
TaqI TCGA 3 cut(s) 127, 850, 976
TasI AATT 2 cut(s) 49, 284
TatI WGTACW 1 cut(s) 696
Tru1I TTAA 4 cut(s) 312, 501, 551, 1045
Tru9I TTAA 4 cut(s) 312, 501, 551, 1045
TscAI CASTG 1 cut(s) 652
TseFI GTSAC 6 cut(s) 85, 278, 643, 857, 984, 1017
TseI GCWGC 3 cut(s) 41, 655, 704
Tsp45I GTSAC 6 cut(s) 85, 278, 643, 857, 984, 1017
TspDTI ATGAA 2 cut(s) 480, 588
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 652
Tth111I GACNNNGTC 1 cut(s) 634
Van91I CCANNNNNTGG 1 cut(s) 885
VpaK11BI GGWCC 3 cut(s) 676, 876, 933
VspI ATTAAT 1 cut(s) 551
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 1 cut(s) 49
XbaI TCTAGA 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 808
XspI CTAG 3 cut(s) 170, 401, 741
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.