Rorug01G0382500

Luc7-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005092
Physical Location & Seq
Reverse (-)
49485757 .. 49487470
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0382500.1

Sequence Viewer

Length: 1269 bp
ATGGATCCATCGAGCAAGGAGAAGTATCGTCCCAATTTGGATACAGTTCTAGAGGTCCCTCACAAGATCACAGTTCTAAAGGTCCCTCGCAAGAACACAACAAAGTTATGGAACAGAATGAAATCATTGATGAACCCGAGGGCACTGTCTCCCGATGTCATTGATGAACCCGATGGCAGGGCACTAGCTAGCTTACTTAGAGTTATTGGAGCTCCACTCGACCGCACACTCGACCGCAACCTCATCCTAGGGCAATGGGATGCCGGGGCAGAATACATTGTGAAGCAATACGTGGCGGCGTTGGGCGGGGAGAAGGCTTTGTCATCAATGGACAGCTTGTGTGCGACGGGCAAGGTGCAGATCACAGTGTCAAATGGGACGAAAGGAAGCTTGAAATCCATTGGCGGTGGGGGAGGAGTCGGAGGACATGGAATGCCAGGGTTTGTGCTCTGGCAAAAGAGGGAGCTATGGTGCTTGGAAGTGATGTTGTCTACTGGTTACAAAGTTAGCACGGGGAGTGATGGCAAGGCGCCTTTGCCTTGGCATCACTCGTATGCTTATCGAGTCCCACCTCTTCCCCTCGGACATCTCCTTCAGGGTCTAAATCCAAGGTCAACAGCAAATTTATTCAGAAACTCCGTTTGTTTTGTGGACAAATTACCAATAAACAAAGAGGACTGCTTCATACTAAAACTGAAGGTTGAACCTTCAACACTAAGCAGCAGCAACGTAGAGATAGTTCGACAAACCGTTTTGGGCTACTTCAGCCACAAAACAGGCCTTTTGGTGAAGCTAGAAGACTCTCGCCAACTAAGGACGACAGCTTTCGGAAAGCACAGTTATTGGGAATCGACAATGGAGTCAGACTTCCAAGACTACAGAACCATCGACGGCCTCAACATCGCACACGGGGGTAGGACTTGTGTGTCTTTGTGTGGTGAGAGCTCGGAAGGCCATCCCCGGAGAAGAATAGTGAAATTGGTTTGGGCACTTGAAGAAGTAGGTTTTGACATTAAGGGGTTGTCCGTGGAGTGCTTCTTGCCTCCTGGTGACTTAAAGAAAGAGGAAGAAAGCTGTGGGATGGTGAAATCATCTTGTGCAAAATTAACATCCAGAATTCCATCTGCTTTGAGATTTCAAGCTACCAAAGTAGTTCCCAGTGACGATTCTAATCATGATCTAGAAGGTAGCGACATTAGTGACCAGGAGGATCTTCAAGATTTCGAGAGCTGCAACAGTAGTGACCATGATGATTCTGATCAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LUC7

Protein Analysis

422

Amino Acids

46.43

Weight (kDa)

6.61

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 114 - 349 3.4e-67 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 859, 925
AccB1I GGYRCC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 491
AciI CCGC 5 cut(s) 223, 235, 296, 306, 405
AclWI GGATC 2 cut(s) 12, 1218
AcsI RAATTY 2 cut(s) 622, 1116
AcuI CTGAAG 3 cut(s) 578, 716, 748
AcyI GRCGYC 1 cut(s) 530
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 6 cut(s) 394, 704, 711, 995, 1139, 1217
AjnI CCWGG 3 cut(s) 436, 1045, 1203
Alw21I GWGCWC 3 cut(s) 214, 450, 947
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 2 cut(s) 12, 1218
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 3 cut(s) 778, 892, 952
ApeKI GCWGC 3 cut(s) 720, 723, 1230
ApoI RAATTY 2 cut(s) 622, 1116
AspA2I CCTAGG 1 cut(s) 247
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 2 cut(s) 55, 82
AsuC2I CCSGG 2 cut(s) 265, 961
AsuHPI GGTGA 4 cut(s) 799, 950, 1061, 1096
AsuNHI GCTAGC 1 cut(s) 188
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 2 cut(s) 55, 82
AvrII CCTAGG 1 cut(s) 247
BaeGI GKGCMC 3 cut(s) 145, 184, 991
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 529
BanII GRGCYC 2 cut(s) 214, 947
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 3 cut(s) 214, 450, 947
BbvI GCAGC 3 cut(s) 732, 735, 1217
BccI CCATC 7 cut(s) 16, 167, 515, 893, 963, 1075, 1129
BceAI ACGGC 1 cut(s) 907
BciT130I CCWGG 3 cut(s) 438, 1047, 1205
BciVI GTATCC 1 cut(s) 34
BclI TGATCA 1 cut(s) 1258
BcnI CCSGG 2 cut(s) 265, 961
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 6 cut(s) 50, 185, 189, 248, 794, 1181
BfmI CTRYAG 1 cut(s) 877
BfoI RGCGCY 1 cut(s) 533
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 4 cut(s) 297, 721, 724, 1231
BlnI CCTAGG 1 cut(s) 247
BlsI GCNGC 4 cut(s) 298, 722, 725, 1232
Bme1390I CCNGG 5 cut(s) 265, 438, 961, 1047, 1205
Bme18I GGWCC 2 cut(s) 55, 82
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 55, 82
BmiI GGNNCC 4 cut(s) 6, 57, 84, 531
BmrFI CCNGG 5 cut(s) 265, 438, 961, 1047, 1205
BmrI ACTGGG 1 cut(s) 1152
BmsI GCATC 2 cut(s) 250, 553
BmtI GCTAGC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 1152
BpiI GAAGAC 1 cut(s) 804
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpuMI CCSGG 2 cut(s) 265, 961
BsaAI YACGTR 1 cut(s) 292
BsaBI GATNNNNATC 2 cut(s) 1170, 1257
BsaHI GRCGYC 1 cut(s) 530
BsaJI CCNNGG 9 cut(s) 137, 247, 264, 437, 539, 580, 608, 959, 1026
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 499, 1158
Bse3DI GCAATG 1 cut(s) 260
Bse8I GATNNNNATC 2 cut(s) 1170, 1257
BseBI CCWGG 3 cut(s) 438, 1047, 1205
BseDI CCNNGG 9 cut(s) 137, 247, 264, 437, 539, 580, 608, 959, 1026
BseGI GGATG 5 cut(s) 243, 265, 955, 1086, 1109
BseJI GATNNNNATC 2 cut(s) 1170, 1257
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 260
BseNI ACTGG 2 cut(s) 499, 1158
BseRI GAGGAG 1 cut(s) 429
BseSI GKGCMC 3 cut(s) 145, 184, 991
BseXI GCAGC 3 cut(s) 732, 735, 1217
BsgI GTGCAG 1 cut(s) 377
Bsh1285I CGRYCG 2 cut(s) 223, 235
BshFI GGCC 3 cut(s) 780, 894, 954
BshNI GGYRCC 1 cut(s) 529
BsiEI CGRYCG 2 cut(s) 223, 235
BsiHKAI GWGCWC 3 cut(s) 214, 450, 947
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 2 cut(s) 264, 961
BslFI GGGAC 5 cut(s) 15, 41, 68, 391, 551
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 5 cut(s) 15, 41, 68, 391, 551
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 3 cut(s) 780, 894, 954
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 6 cut(s) 145, 184, 214, 450, 947, 991
Bsp143I GATC 6 cut(s) 4, 66, 360, 1177, 1210, 1258
BspACI CCGC 5 cut(s) 223, 235, 296, 306, 405
BspANI GGCC 3 cut(s) 780, 894, 954
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 4 cut(s) 6, 57, 84, 531
BspOI GCTAGC 1 cut(s) 192
BspPI GGATC 2 cut(s) 12, 1218
BspT107I GGYRCC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 260
BsrI ACTGG 2 cut(s) 499, 1158
BssECI CCNNGG 9 cut(s) 137, 247, 264, 437, 539, 580, 608, 959, 1026
BssMI GATC 6 cut(s) 4, 66, 360, 1177, 1210, 1258
BssNI GRCGYC 1 cut(s) 530
BssT1I CCWWGG 3 cut(s) 247, 539, 608
Bst2UI CCWGG 3 cut(s) 438, 1047, 1205
Bst4CI ACNGT 7 cut(s) 46, 73, 147, 367, 751, 839, 1238
Bst6I CTCTTC 1 cut(s) 579
BstACI GRCGYC 1 cut(s) 530
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 197, 716, 812
BstDSI CCRYGG 1 cut(s) 1026
BstF5I GGATG 5 cut(s) 243, 265, 955, 1086, 1109
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 6 cut(s) 7, 69, 363, 1180, 1213, 1261
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 6 cut(s) 4, 66, 360, 1177, 1210, 1258
BstMCI CGRYCG 2 cut(s) 223, 235
BstMWI GCNNNNNNNGC 2 cut(s) 765, 951
BstNI CCWGG 3 cut(s) 438, 1047, 1205
BstSCI CCNGG 5 cut(s) 263, 436, 959, 1045, 1203
BstSFI CTRYAG 1 cut(s) 877
BstSLI GKGCMC 3 cut(s) 145, 184, 991
BstV1I GCAGC 3 cut(s) 732, 735, 1217
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 4, 1210
BstYI RGATCY 2 cut(s) 4, 1210
BsuI GTATCC 1 cut(s) 34
BsuRI GGCC 3 cut(s) 780, 894, 954
BtgI CCRYGG 1 cut(s) 1026
BtgZI GCGATG 1 cut(s) 886
BtsCI GGATG 5 cut(s) 243, 265, 955, 1086, 1109
BtsIMutI CAGTG 3 cut(s) 143, 372, 1165
Cac8I GCNNGC 1 cut(s) 190
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 1 cut(s) 532
Cfr13I GGNCC 2 cut(s) 55, 82
CviAII CATG 3 cut(s) 428, 1175, 1247
DdeI CTNAG 3 cut(s) 197, 716, 812
DinI GGCGCC 1 cut(s) 531
DpnI GATC 6 cut(s) 6, 68, 362, 1179, 1212, 1260
DpnII GATC 6 cut(s) 4, 66, 360, 1177, 1210, 1258
DrdI GACNNNNNNGTC 2 cut(s) 859, 925
DseDI GACNNNNNNGTC 2 cut(s) 859, 925
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Ecl136II GAGCTC 2 cut(s) 212, 945
Eco130I CCWWGG 3 cut(s) 247, 539, 608
Eco147I AGGCCT 1 cut(s) 780
Eco24I GRGCYC 2 cut(s) 214, 947
Eco47I GGWCC 2 cut(s) 55, 82
Eco53kI GAGCTC 2 cut(s) 212, 945
Eco57I CTGAAG 3 cut(s) 578, 716, 748
Eco88I CYCGRG 1 cut(s) 136
EcoICRI GAGCTC 2 cut(s) 212, 945
EcoO109I RGGNCCY 2 cut(s) 55, 82
EcoRI GAATTC 1 cut(s) 1116
EcoRII CCWGG 3 cut(s) 436, 1045, 1203
EcoT14I CCWWGG 3 cut(s) 247, 539, 608
EcoT38I GRGCYC 2 cut(s) 214, 947
EgeI GGCGCC 1 cut(s) 531
EheI GGCGCC 1 cut(s) 531
ErhI CCWWGG 3 cut(s) 247, 539, 608
FaeI CATG 3 cut(s) 431, 1178, 1250
FaiI YATR 7 cut(s) 109, 429, 469, 555, 686, 1176, 1248
FaqI GGGAC 5 cut(s) 15, 41, 68, 391, 551
FatI CATG 3 cut(s) 427, 1174, 1246
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 1258
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 4 cut(s) 297, 721, 724, 1231
FokI GGATG 5 cut(s) 230, 272, 942, 1093, 1096
FriOI GRGCYC 2 cut(s) 214, 947
Fsp4HI GCNGC 4 cut(s) 297, 721, 724, 1231
FspBI CTAG 6 cut(s) 50, 185, 189, 248, 794, 1181
GlaI GCGC 1 cut(s) 531
GluI GCNGC 4 cut(s) 297, 721, 724, 1231
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 3 cut(s) 780, 894, 954
HapII CCGG 2 cut(s) 264, 961
HhaI GCGC 1 cut(s) 532
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 3 cut(s) 431, 1178, 1250
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 7 cut(s) 417, 564, 800, 848, 860, 1166, 1253
HpaII CCGG 2 cut(s) 264, 961
HphI GGTGA 4 cut(s) 799, 950, 1061, 1096
Hpy166II GTNNAC 3 cut(s) 492, 615, 652
Hpy188I TCNGA 7 cut(s) 422, 584, 632, 830, 865, 949, 1258
Hpy188III TCNNGA 7 cut(s) 50, 152, 1113, 1175, 1181, 1217, 1225
Hpy8I GTNNAC 3 cut(s) 492, 615, 652
Hpy99I CGWCG 2 cut(s) 349, 893
HpyAV CCTTC 6 cut(s) 307, 602, 691, 717, 944, 1178
HpyCH4III ACNGT 7 cut(s) 46, 73, 147, 367, 751, 839, 1238
HpyCH4IV ACGT 2 cut(s) 291, 729
HpyCH4V TGCA 3 cut(s) 358, 1100, 1233
HpyF10VI GCNNNNNNNGC 2 cut(s) 765, 951
HpyF3I CTNAG 3 cut(s) 197, 716, 812
HpySE526I ACGT 2 cut(s) 291, 729
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 3 cut(s) 431, 1178, 1250
HspAI GCGC 1 cut(s) 530
KasI GGCGCC 1 cut(s) 529
Ksp22I TGATCA 1 cut(s) 1258
Kzo9I GATC 6 cut(s) 4, 66, 360, 1177, 1210, 1258
LmnI GCTCC 3 cut(s) 209, 217, 463
Lsp1109I GCAGC 3 cut(s) 732, 735, 1217
LweI GCATC 2 cut(s) 250, 553
MaeI CTAG 6 cut(s) 50, 185, 189, 248, 794, 1181
MaeII ACGT 2 cut(s) 291, 729
MaeIII GTNAC 5 cut(s) 497, 1049, 1160, 1199, 1241
MalI GATC 6 cut(s) 6, 68, 362, 1179, 1212, 1260
MboI GATC 6 cut(s) 4, 66, 360, 1177, 1210, 1258
MboII GAAGA 6 cut(s) 566, 809, 978, 1007, 1079, 1205
MflI RGATCY 2 cut(s) 4, 1210
MhlI GDGCHC 6 cut(s) 145, 184, 214, 450, 947, 991
MluCI AATT 6 cut(s) 34, 622, 656, 977, 1103, 1116
Mly113I GGCGCC 1 cut(s) 530
MlyI GAGTC 4 cut(s) 426, 573, 794, 869
MmeI TCCRAC 1 cut(s) 400
MseI TTAA 4 cut(s) 1014, 1055, 1106, 1267
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 2 cut(s) 264, 961
MspR9I CCNGG 5 cut(s) 265, 438, 961, 1047, 1205
Mva1269I GAATGC 1 cut(s) 438
MvaI CCWGG 3 cut(s) 438, 1047, 1205
MwoI GCNNNNNNNGC 2 cut(s) 765, 951
NarI GGCGCC 1 cut(s) 530
NciI CCSGG 2 cut(s) 265, 961
NdeII GATC 6 cut(s) 4, 66, 360, 1177, 1210, 1258
NheI GCTAGC 1 cut(s) 188
NlaIII CATG 3 cut(s) 431, 1178, 1250
NlaIV GGNNCC 4 cut(s) 6, 57, 84, 531
NmuCI GTSAC 4 cut(s) 1049, 1160, 1199, 1241
PagI TCATGA 1 cut(s) 1174
PceI AGGCCT 1 cut(s) 780
PctI GAATGC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 848, 1166, 1253
PkrI GCNGC 4 cut(s) 298, 722, 725, 1232
PleI GAGTC 4 cut(s) 425, 572, 794, 868
PluTI GGCGCC 1 cut(s) 533
PpsI GAGTC 4 cut(s) 425, 572, 794, 868
Ppu21I YACGTR 1 cut(s) 292
PpuMI RGGWCCY 2 cut(s) 55, 82
Psp124BI GAGCTC 2 cut(s) 214, 947
Psp5II RGGWCCY 2 cut(s) 55, 82
Psp6I CCWGG 3 cut(s) 436, 1045, 1203
PspGI CCWGG 3 cut(s) 436, 1045, 1203
PspN4I GGNNCC 4 cut(s) 6, 57, 84, 531
PspPI GGNCC 2 cut(s) 55, 82
PspPPI RGGWCCY 2 cut(s) 55, 82
PsrI GAACNNNNNNTAC 2 cut(s) 723, 755
PsuI RGATCY 2 cut(s) 4, 1210
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 2 cut(s) 214, 947
SaqAI TTAA 4 cut(s) 1014, 1055, 1106, 1267
SatI GCNGC 4 cut(s) 297, 721, 724, 1231
Sau3AI GATC 6 cut(s) 4, 66, 360, 1177, 1210, 1258
Sau96I GGNCC 2 cut(s) 55, 82
SchI GAGTC 4 cut(s) 426, 573, 794, 869
ScrFI CCNGG 5 cut(s) 265, 438, 961, 1047, 1205
SduI GDGCHC 6 cut(s) 145, 184, 214, 450, 947, 991
SfaNI GCATC 2 cut(s) 250, 553
SfcI CTRYAG 1 cut(s) 877
SfoI GGCGCC 1 cut(s) 531
SinI GGWCC 2 cut(s) 55, 82
SmiMI CAYNNNNRTG 1 cut(s) 552
Sse9I AATT 6 cut(s) 34, 622, 656, 977, 1103, 1116
SseBI AGGCCT 1 cut(s) 780
SsiI CCGC 5 cut(s) 223, 235, 296, 306, 405
SspDI GGCGCC 1 cut(s) 529
SspMI CTAG 6 cut(s) 50, 185, 189, 248, 794, 1181
SstI GAGCTC 2 cut(s) 214, 947
StuI AGGCCT 1 cut(s) 780
StyD4I CCNGG 5 cut(s) 263, 436, 959, 1045, 1203
StyI CCWWGG 3 cut(s) 247, 539, 608
TaaI ACNGT 7 cut(s) 46, 73, 147, 367, 751, 839, 1238
TaiI ACGT 2 cut(s) 294, 732
TaqI TCGA 8 cut(s) 11, 219, 231, 562, 742, 851, 888, 1224
TasI AATT 6 cut(s) 34, 622, 656, 977, 1103, 1116
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 3 cut(s) 848, 1166, 1253
Tru1I TTAA 4 cut(s) 1014, 1055, 1106, 1267
Tru9I TTAA 4 cut(s) 1014, 1055, 1106, 1267
TscAI CASTG 3 cut(s) 150, 372, 1165
TseFI GTSAC 4 cut(s) 1049, 1160, 1199, 1241
TseI GCWGC 3 cut(s) 720, 723, 1230
Tsp45I GTSAC 4 cut(s) 1049, 1160, 1199, 1241
TspDTI ATGAA 4 cut(s) 134, 146, 180, 673
TspGWI ACGGA 2 cut(s) 628, 1015
TspRI CASTG 3 cut(s) 150, 372, 1165
VpaK11BI GGWCC 2 cut(s) 55, 82
XapI RAATTY 2 cut(s) 622, 1116
XbaI TCTAGA 2 cut(s) 49, 1180
XmaJI CCTAGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 491
XspI CTAG 6 cut(s) 50, 185, 189, 248, 794, 1181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.