Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043135.1

Orthogroup ID

OG0005092

Physical Location & Seq

Genomic Coordinates Reverse (-)

1232 .. 3663

Gene Structure 2432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggatgctcagcgagctctgctggacgaactcatgggcgcagctcggaatttgacggaggaagagagaaaagggtacaaggagatcacttgggactctaaggaggtttgcggagcctatatggttcgtttcgagaagtctccaaggcatgctgcgtatgtgccaaggtttgaagctgatcttgctcagttttgtgagaaactggtgatggatttggatagaagagttaagcgtgggcgagaacgcctttctcaggaggtggaacctccaccacaacctcctctgtcagctgaaaagtctgaacagttatctgttctggaggaaaaaataaagaacttattggaacaagcggaggagcttggtgcatctgggaaggtggatgaagctgaggcactgatgagaaaggtggatgtgcttaatgttgagaaaacagtcttggctctacagcccccgaatgctcaaccattgatggttccacaggagaaaaaaatggcactctgtgagatctgtggttcatttcttgtggccaatgatgctttagagaggactcaatctcatgtcactgggaagcagcatattggttatggcatggtccgagattttattgctgagtacaaggcagctaaggagaaagcaagggaagaagaaaagttagctagggagaaagaagcagaagaacggaggaaacagctggagaaggaaaatgagagtagaaggagaagtggttcaagtgacagggacaggtatcgtgatagagatcgtgacagatatcgagaacgtgatttggatcgtgaaaggtcaagagagtggactggtaggggtggtcgggatggtggaagaggggtggattggaggtccaggaatggaagagatgcaggcagggataggtaccgtaatcgaagcaggtcacgttcccctgttagacatacccacaggaggtcacctaggagtccagttcgcccgtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LUC7

Protein Analysis

322

Amino Acids

37.55

Weight (kDa)

9.39

Isoelectric Point (pI)

58.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51410 AT5G51410 AT5G51410 AT5G51410 AT5G51410
fragaria_vesca	FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480
malus_domestica	MD01G1182700.v1.1 MD07G1253500.v1.1
prunus_persica	Prupe.2G276900_v2.0.a1 Prupe.2G276900_v2.0.a1
pyrus_communis	pycom01g19290 pycom07g22620
rosa_chinensis	RchiOBHm_Chr1g0374271
rosa_laevigata	RLG00000026747
rosa_multiflora	Rmu_sc0043135.1_g000001 Rmu_ssc0000007.1_g000023
rosa_roxburghii	Rroxscaffold_4G00283590
rosa_rugosa	Rorug01G0382500 Rorug01G0382600
rosa_samantha	Rh1BG357400
rosa_wichuraiana	Rw1G034070 Rw1G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	894
Acc65I	GGTACC	1 cut(s)	888
AccB1I	GGYRCC	1 cut(s)	888
AciI	CCGC	2 cut(s)	111, 350
AclWI	GGATC	1 cut(s)	795
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	49
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	3 cut(s)	77, 614, 890
AfiI	CCNNNNNNNGG	2 cut(s)	253, 936
AgsI	TTSAA	2 cut(s)	173, 729
AjnI	CCWGG	1 cut(s)	857
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
AluBI	AGCT	9 cut(s)	17, 44, 176, 290, 358, 386, 623, 656, 691
AluI	AGCT	9 cut(s)	17, 44, 176, 290, 358, 386, 623, 656, 691
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	795
AoxI	GGCC	1 cut(s)	525
ApeKI	GCWGC	4 cut(s)	41, 152, 571, 620
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	724
Asp718I	GGTACC	1 cut(s)	888
AspA2I	CCTAGG	1 cut(s)	944
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	592, 855
AsuHPI	GGTGA	2 cut(s)	217, 933
AvaII	GGWCC	2 cut(s)	592, 855
AvrII	CCTAGG	1 cut(s)	944
BalI	TGGCCA	1 cut(s)	527
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	4 cut(s)	53, 139, 583, 632
BccI	CCATC	3 cut(s)	202, 463, 824
BciT130I	CCWGG	1 cut(s)	859
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	2 cut(s)	657, 945
BfmI	CTRYAG	1 cut(s)	443
BfuAI	ACCTGC	1 cut(s)	894
BglII	AGATCT	1 cut(s)	504
BisI	GCNGC	4 cut(s)	42, 153, 572, 621
BlnI	CCTAGG	1 cut(s)	944
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	4 cut(s)	43, 154, 573, 622
Bme1390I	CCNGG	1 cut(s)	859
Bme18I	GGWCC	2 cut(s)	592, 855
BmgT120I	GGNCC	2 cut(s)	592, 855
BmiI	GGNNCC	4 cut(s)	115, 264, 474, 890
BmrFI	CCNGG	1 cut(s)	859
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	3 cut(s)	374, 523, 862
BmuI	ACTGGG	1 cut(s)	573
BpmI	CTGGAG	2 cut(s)	338, 713
Bpu10I	CCTNAGC	2 cut(s)	387, 624
Bpu1102I	GCTNAGC	1 cut(s)	9
BsaBI	GATNNNNATC	2 cut(s)	756, 786
BsaJI	CCNNGG	3 cut(s)	143, 164, 944
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 936
Bse1I	ACTGG	4 cut(s)	207, 568, 817, 953
Bse8I	GATNNNNATC	2 cut(s)	756, 786
BseBI	CCWGG	1 cut(s)	859
BseDI	CCNNGG	3 cut(s)	143, 164, 944
BseGI	GGATG	4 cut(s)	10, 385, 415, 835
BseJI	GATNNNNATC	2 cut(s)	756, 786
BseLI	CCNNNNNNNGG	2 cut(s)	253, 936
BseMII	CTCAG	5 cut(s)	23, 200, 266, 378, 600
BseNI	ACTGG	4 cut(s)	207, 568, 817, 953
BseRI	GAGGAG	2 cut(s)	270, 368
BseXI	GCAGC	4 cut(s)	53, 139, 583, 632
BshFI	GGCC	1 cut(s)	527
BshNI	GGYRCC	1 cut(s)	888
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	107, 752
BslI	CCNNNNNNNGG	2 cut(s)	253, 936
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	107, 752
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	5 cut(s)	84, 178, 504, 757, 787
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	111, 350
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	5 cut(s)	22, 199, 265, 379, 601
BspLI	GGNNCC	4 cut(s)	115, 264, 474, 890
BspMI	ACCTGC	1 cut(s)	894
BspPI	GGATC	1 cut(s)	795
BspT107I	GGYRCC	1 cut(s)	888
BsrI	ACTGG	4 cut(s)	207, 568, 817, 953
BssECI	CCNNGG	3 cut(s)	143, 164, 944
BssMI	GATC	5 cut(s)	84, 178, 504, 757, 787
BssT1I	CCWWGG	3 cut(s)	143, 164, 944
Bst2UI	CCWGG	1 cut(s)	859
Bst4CI	ACNGT	3 cut(s)	306, 433, 893
Bst6I	CTCTTC	4 cut(s)	57, 217, 832, 862
BstC8I	GCNNGC	3 cut(s)	15, 150, 877
BstDEI	CTNAG	7 cut(s)	9, 99, 186, 252, 387, 609, 624
BstEII	GGTNACC	1 cut(s)	939
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	4 cut(s)	10, 385, 415, 835
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	5 cut(s)	87, 181, 507, 760, 790
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	5 cut(s)	84, 178, 504, 757, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 19, 182, 533
BstNI	CCWGG	1 cut(s)	859
BstNSI	RCATGY	1 cut(s)	152
BstPI	GGTNACC	1 cut(s)	939
BstSCI	CCNGG	1 cut(s)	857
BstSFI	CTRYAG	1 cut(s)	443
BstV1I	GCAGC	4 cut(s)	53, 139, 583, 632
BstX2I	RGATCY	1 cut(s)	504
BstYI	RGATCY	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	527
BtsCI	GGATG	4 cut(s)	10, 385, 415, 835
BtsIMutI	CAGTG	2 cut(s)	392, 561
BveI	ACCTGC	1 cut(s)	894
Cac8I	GCNNGC	3 cut(s)	15, 150, 877
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	592, 855
Csp6I	GTAC	3 cut(s)	76, 613, 889
CviAII	CATG	4 cut(s)	34, 149, 557, 589
CviQI	GTAC	3 cut(s)	76, 613, 889
DdeI	CTNAG	7 cut(s)	9, 99, 186, 252, 387, 609, 624
DpnI	GATC	5 cut(s)	86, 180, 506, 759, 789
DpnII	GATC	5 cut(s)	84, 178, 504, 757, 787
DraIII	CACNNNGTG	1 cut(s)	500
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	4 cut(s)	57, 217, 832, 862
EarI	CTCTTC	4 cut(s)	57, 217, 832, 862
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	3 cut(s)	143, 164, 944
Eco24I	GRGCYC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	770
Eco47I	GGWCC	2 cut(s)	592, 855
Eco53kI	GAGCTC	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	939
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	939
EcoRII	CCWGG	1 cut(s)	857
EcoRV	GATATC	1 cut(s)	770
EcoT14I	CCWWGG	3 cut(s)	143, 164, 944
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	3 cut(s)	143, 164, 944
FaeI	CATG	4 cut(s)	37, 152, 560, 592
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	2 cut(s)	107, 752
FatI	CATG	4 cut(s)	33, 148, 556, 588
Fnu4HI	GCNGC	4 cut(s)	42, 153, 572, 621
FokI	GGATG	4 cut(s)	17, 392, 422, 842
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	4 cut(s)	42, 153, 572, 621
FspBI	CTAG	2 cut(s)	657, 945
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	4 cut(s)	42, 153, 572, 621
GsuI	CTGGAG	2 cut(s)	338, 713
HaeIII	GGCC	1 cut(s)	527
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	4 cut(s)	37, 152, 560, 592
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	3 cut(s)	95, 547, 949
HphI	GGTGA	2 cut(s)	217, 933
Hpy166II	GTNNAC	1 cut(s)	810
Hpy188I	TCNGA	3 cut(s)	48, 301, 596
Hpy188III	TCNNGA	9 cut(s)	133, 254, 317, 749, 761, 773, 791, 801, 827
Hpy8I	GTNNAC	1 cut(s)	810
HpyAV	CCTTC	3 cut(s)	367, 691, 708
HpyCH4III	ACNGT	3 cut(s)	306, 433, 893
HpyCH4IV	ACGT	2 cut(s)	778, 910
HpyCH4V	TGCA	2 cut(s)	365, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 19, 182, 533
HpyF3I	CTNAG	7 cut(s)	9, 99, 186, 252, 387, 609, 624
HpySE526I	ACGT	2 cut(s)	778, 910
Hsp92II	CATG	4 cut(s)	37, 152, 560, 592
HspAI	GCGC	1 cut(s)	39
KpnI	GGTACC	1 cut(s)	892
Kzo9I	GATC	5 cut(s)	84, 178, 504, 757, 787
LmnI	GCTCC	2 cut(s)	113, 355
Lsp1109I	GCAGC	4 cut(s)	53, 139, 583, 632
LweI	GCATC	3 cut(s)	374, 523, 862
MaeI	CTAG	2 cut(s)	657, 945
MaeII	ACGT	2 cut(s)	778, 910
MaeIII	GTNAC	5 cut(s)	559, 731, 761, 906, 939
MalI	GATC	5 cut(s)	86, 180, 506, 759, 789
MboI	GATC	5 cut(s)	84, 178, 504, 757, 787
MboII	GAAGA	7 cut(s)	74, 234, 653, 656, 686, 849, 879
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	1 cut(s)	49
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	3 cut(s)	89, 541, 958
Mox20I	TGGCCA	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	724
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	3 cut(s)	228, 417, 967
Msp20I	TGGCCA	1 cut(s)	527
MspA1I	CMGCKG	2 cut(s)	290, 691
MspR9I	CCNGG	1 cut(s)	859
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	859
MwoI	GCNNNNNNNGC	4 cut(s)	14, 19, 182, 533
NdeII	GATC	5 cut(s)	84, 178, 504, 757, 787
NlaIII	CATG	4 cut(s)	37, 152, 560, 592
NlaIV	GGNNCC	4 cut(s)	115, 264, 474, 890
NmuCI	GTSAC	5 cut(s)	559, 731, 761, 906, 939
NspI	RCATGY	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	152
PctI	GAATGC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	724
PfoI	TCCNGGA	1 cut(s)	857
PkrI	GCNGC	4 cut(s)	43, 154, 573, 622
PleI	GAGTC	3 cut(s)	89, 541, 957
PpsI	GAGTC	3 cut(s)	89, 541, 957
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	857
PspEI	GGTNACC	1 cut(s)	939
PspGI	CCWGG	1 cut(s)	857
PspN4I	GGNNCC	4 cut(s)	115, 264, 474, 890
PspPI	GGNCC	2 cut(s)	592, 855
PsuI	RGATCY	1 cut(s)	504
PvuII	CAGCTG	2 cut(s)	290, 691
RsaI	GTAC	3 cut(s)	77, 614, 890
RsaNI	GTAC	3 cut(s)	76, 613, 889
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	3 cut(s)	228, 417, 967
SatI	GCNGC	4 cut(s)	42, 153, 572, 621
Sau3AI	GATC	5 cut(s)	84, 178, 504, 757, 787
Sau96I	GGNCC	2 cut(s)	592, 855
SchI	GAGTC	3 cut(s)	89, 541, 958
ScrFI	CCNGG	1 cut(s)	859
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	3 cut(s)	374, 523, 862
SfcI	CTRYAG	1 cut(s)	443
SinI	GGWCC	2 cut(s)	592, 855
SphI	GCATGC	1 cut(s)	152
Sse9I	AATT	1 cut(s)	49
SsiI	CCGC	2 cut(s)	111, 350
SspMI	CTAG	2 cut(s)	657, 945
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	857
StyI	CCWWGG	3 cut(s)	143, 164, 944
TaaI	ACNGT	3 cut(s)	306, 433, 893
TaiI	ACGT	2 cut(s)	781, 913
TaqI	TCGA	3 cut(s)	132, 772, 898
TasI	AATT	1 cut(s)	49
TatI	WGTACW	1 cut(s)	612
Tru1I	TTAA	3 cut(s)	228, 417, 967
Tru9I	TTAA	3 cut(s)	228, 417, 967
TscAI	CASTG	2 cut(s)	399, 568
TseFI	GTSAC	5 cut(s)	559, 731, 761, 906, 939
TseI	GCWGC	4 cut(s)	41, 152, 571, 620
Tsp45I	GTSAC	5 cut(s)	559, 731, 761, 906, 939
TspDTI	ATGAA	2 cut(s)	396, 504
TspGWI	ACGGA	2 cut(s)	71, 694
TspRI	CASTG	2 cut(s)	399, 568
VpaK11BI	GGWCC	2 cut(s)	592, 855
XagI	CCTNNNNNAGG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	152
XmaJI	CCTAGG	1 cut(s)	944
XmnI	GAANNNNTTC	1 cut(s)	724
XspI	CTAG	2 cut(s)	657, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.