Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000007.1

Orthogroup ID

OG0005092

Physical Location & Seq

Genomic Coordinates Forward (+)

119042 .. 122543

Gene Structure 3502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000007.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atggatgctcagcgagctctgctggacgaactcatgggcgcagctcggaatttgacggaggaagagagaaaagggtacaaggagatcacttgggactctaaggaggtttgcggagcctatatggttcggttttgtcctcatgatctgtttgtcaatacccgaagcgatctaggggcatgccccagaatacatgactctaagctgaaagaaagtttcgagaagtctccaaggcatgctgcgtatgtgccaaggtttgaagctgatcttgctcagttttgtgagaaactggtgatggatttggatagaagagttaagcgtgggcgagaacgcctttctcaggaggtggaacctccaccacaacctcctctgtcagctgaaaagtctgaacagttatctgttctggaggaaaaaataaagaacttattggaacaagcggaggagcttggtgcatctgggaaggtggatgaagctgaggcactgatgagaaaggtggatgtgcttaatgttgagaaaacagtcttggctctacagcccccgaatgctcaaccattgatggttccacaggagaaaaaaatggcactctgtgagatctgtggttcatttcttgtggccaatgatgctttagagaggactcaatctcatgtcactgggaagcagcatattggttatggcatggtccgagattttattgctgagtacaaggcagctaaggagaaagcaagggaagaagaaaagttagctagggagaaagaagcagaagaacggaggaaacagctggagaaggaaaatgagagtagaaggagaagtggttcaagtgacagggacaggtatcgtgatagagatcgtgacagatatcgagaacgtgatttggatcgtgaaaggtcaagagagtggactggtaggggtggtcgggatggtggaagaggggtggattggaggtccaggaatggaagagatgcaggcagggataggtaccgtaatcgaagcaggtcacgttcccctgttagacatacccacaggaggtcacctaggagtccatggtcttctagctttccagttgtcaaaactcactactttgtcctctcctcaccgcctcttaggacatggaaatctaatcatgaagcgggtagctttggagttcaagttctcgatcacaatttggtctatctggaggggctttctacagaagttttgtttccaaggctgtttgataggggatgtgaaatggtatcagtgaatggagggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LUC7

Protein Analysis

415

Amino Acids

47.91

Weight (kDa)

9.02

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51410 AT5G51410 AT5G51410 AT5G51410 AT5G51410
fragaria_vesca	FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480
malus_domestica	MD01G1182700.v1.1 MD07G1253500.v1.1
prunus_persica	Prupe.2G276900_v2.0.a1 Prupe.2G276900_v2.0.a1
pyrus_communis	pycom01g19290 pycom07g22620
rosa_chinensis	RchiOBHm_Chr1g0374271
rosa_laevigata	RLG00000026747
rosa_multiflora	Rmu_sc0043135.1_g000001 Rmu_ssc0000007.1_g000023
rosa_roxburghii	Rroxscaffold_4G00283590
rosa_rugosa	Rorug01G0382500 Rorug01G0382600
rosa_samantha	Rh1BG357400
rosa_wichuraiana	Rw1G034070 Rw1G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	978
Acc65I	GGTACC	1 cut(s)	972
AccB1I	GGYRCC	1 cut(s)	972
AciI	CCGC	4 cut(s)	111, 434, 1091, 1124
AclWI	GGATC	1 cut(s)	879
AcoI	YGGCCR	1 cut(s)	609
AcsI	RAATTY	1 cut(s)	49
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	3 cut(s)	77, 698, 974
AfiI	CCNNNNNNNGG	2 cut(s)	337, 1020
AgsI	TTSAA	3 cut(s)	257, 813, 1142
AjnI	CCWGG	1 cut(s)	941
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AloI	GAACNNNNNNTCC	4 cut(s)	793, 825, 1128, 1160
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	1 cut(s)	879
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	4 cut(s)	41, 236, 655, 704
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	808
Asp718I	GGTACC	1 cut(s)	972
AspA2I	CCTAGG	1 cut(s)	1028
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	676, 939
AsuHPI	GGTGA	3 cut(s)	301, 1017, 1080
AvaII	GGWCC	2 cut(s)	676, 939
AvrII	CCTAGG	1 cut(s)	1028
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	972
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	1035
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	4 cut(s)	53, 223, 667, 716
BccI	CCATC	3 cut(s)	286, 547, 908
BciT130I	CCWGG	1 cut(s)	943
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	4 cut(s)	170, 741, 1029, 1047
BfmI	CTRYAG	2 cut(s)	527, 1182
BfuAI	ACCTGC	1 cut(s)	978
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	4 cut(s)	42, 237, 656, 705
BlnI	CCTAGG	1 cut(s)	1028
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	4 cut(s)	43, 238, 657, 706
Bme1390I	CCNGG	1 cut(s)	943
Bme18I	GGWCC	2 cut(s)	676, 939
BmgT120I	GGNCC	2 cut(s)	676, 939
BmiI	GGNNCC	4 cut(s)	115, 348, 558, 974
BmrFI	CCNGG	1 cut(s)	943
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	3 cut(s)	458, 607, 946
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	1035
BpmI	CTGGAG	3 cut(s)	422, 797, 1190
Bpu10I	CCTNAGC	2 cut(s)	471, 708
Bpu1102I	GCTNAGC	1 cut(s)	9
BsaBI	GATNNNNATC	2 cut(s)	840, 870
BsaJI	CCNNGG	5 cut(s)	227, 248, 1028, 1037, 1199
BsaXI	ACNNNNNCTCC	4 cut(s)	793, 823, 1128, 1158
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 1020
Bse1I	ACTGG	4 cut(s)	291, 652, 901, 1055
Bse8I	GATNNNNATC	2 cut(s)	840, 870
BseBI	CCWGG	1 cut(s)	943
BseDI	CCNNGG	5 cut(s)	227, 248, 1028, 1037, 1199
BseGI	GGATG	5 cut(s)	10, 469, 499, 919, 1223
BseJI	GATNNNNATC	2 cut(s)	840, 870
BseLI	CCNNNNNNNGG	2 cut(s)	337, 1020
BseMII	CTCAG	5 cut(s)	23, 284, 350, 462, 684
BseNI	ACTGG	4 cut(s)	291, 652, 901, 1055
BseRI	GAGGAG	3 cut(s)	354, 452, 1075
BseXI	GCAGC	4 cut(s)	53, 223, 667, 716
BshFI	GGCC	1 cut(s)	611
BshNI	GGYRCC	1 cut(s)	972
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	107, 836
BslI	CCNNNNNNNGG	2 cut(s)	337, 1020
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	107, 836
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	8 cut(s)	84, 142, 166, 262, 588, 841, 871, 1150
Bsp1720I	GCTNAGC	1 cut(s)	9
Bsp19I	CCATGG	1 cut(s)	1037
BspACI	CCGC	4 cut(s)	111, 434, 1091, 1124
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	5 cut(s)	22, 283, 349, 463, 685
BspHI	TCATGA	2 cut(s)	139, 1117
BspLI	GGNNCC	4 cut(s)	115, 348, 558, 974
BspMI	ACCTGC	1 cut(s)	978
BspPI	GGATC	1 cut(s)	879
BspT107I	GGYRCC	1 cut(s)	972
BsrI	ACTGG	4 cut(s)	291, 652, 901, 1055
BssECI	CCNNGG	5 cut(s)	227, 248, 1028, 1037, 1199
BssMI	GATC	8 cut(s)	84, 142, 166, 262, 588, 841, 871, 1150
BssT1I	CCWWGG	5 cut(s)	227, 248, 1028, 1037, 1199
Bst2UI	CCWGG	1 cut(s)	943
Bst4CI	ACNGT	3 cut(s)	390, 517, 977
Bst6I	CTCTTC	4 cut(s)	57, 301, 916, 946
BstC8I	GCNNGC	4 cut(s)	15, 178, 234, 961
BstDEI	CTNAG	9 cut(s)	9, 99, 198, 270, 336, 471, 693, 708, 1097
BstDSI	CCRYGG	1 cut(s)	1037
BstEII	GGTNACC	1 cut(s)	1023
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	5 cut(s)	10, 469, 499, 919, 1223
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	8 cut(s)	87, 145, 169, 265, 591, 844, 874, 1153
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	8 cut(s)	84, 142, 166, 262, 588, 841, 871, 1150
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 19, 266, 617
BstNI	CCWGG	1 cut(s)	943
BstNSI	RCATGY	2 cut(s)	180, 236
BstPI	GGTNACC	1 cut(s)	1023
BstSCI	CCNGG	1 cut(s)	941
BstSFI	CTRYAG	2 cut(s)	527, 1182
BstV1I	GCAGC	4 cut(s)	53, 223, 667, 716
BstV2I	GAAGAC	1 cut(s)	1035
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuRI	GGCC	1 cut(s)	611
BtgI	CCRYGG	1 cut(s)	1037
BtsCI	GGATG	5 cut(s)	10, 469, 499, 919, 1223
BtsIMutI	CAGTG	3 cut(s)	476, 645, 1239
BveI	ACCTGC	1 cut(s)	978
Cac8I	GCNNGC	4 cut(s)	15, 178, 234, 961
CciI	TCATGA	2 cut(s)	139, 1117
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	676, 939
Csp6I	GTAC	3 cut(s)	76, 697, 973
CviQI	GTAC	3 cut(s)	76, 697, 973
DdeI	CTNAG	9 cut(s)	9, 99, 198, 270, 336, 471, 693, 708, 1097
DpnI	GATC	8 cut(s)	86, 144, 168, 264, 590, 843, 873, 1152
DpnII	GATC	8 cut(s)	84, 142, 166, 262, 588, 841, 871, 1150
DraIII	CACNNNGTG	1 cut(s)	584
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	4 cut(s)	57, 301, 916, 946
EarI	CTCTTC	4 cut(s)	57, 301, 916, 946
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	5 cut(s)	227, 248, 1028, 1037, 1199
Eco24I	GRGCYC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	854
Eco47I	GGWCC	2 cut(s)	676, 939
Eco53kI	GAGCTC	1 cut(s)	17
Eco91I	GGTNACC	1 cut(s)	1023
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	1023
EcoRII	CCWGG	1 cut(s)	941
EcoRV	GATATC	1 cut(s)	854
EcoT14I	CCWWGG	5 cut(s)	227, 248, 1028, 1037, 1199
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	5 cut(s)	227, 248, 1028, 1037, 1199
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	107, 836
FauI	CCCGC	1 cut(s)	1117
Fnu4HI	GCNGC	4 cut(s)	42, 237, 656, 705
FokI	GGATG	5 cut(s)	17, 476, 506, 926, 1230
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	4 cut(s)	42, 237, 656, 705
FspBI	CTAG	4 cut(s)	170, 741, 1029, 1047
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	4 cut(s)	42, 237, 656, 705
GsuI	CTGGAG	3 cut(s)	422, 797, 1190
HaeIII	GGCC	1 cut(s)	611
HhaI	GCGC	1 cut(s)	41
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	4 cut(s)	95, 194, 631, 1033
HphI	GGTGA	3 cut(s)	301, 1017, 1080
Hpy166II	GTNNAC	1 cut(s)	894
Hpy188I	TCNGA	3 cut(s)	48, 385, 680
Hpy8I	GTNNAC	1 cut(s)	894
HpyAV	CCTTC	3 cut(s)	451, 775, 792
HpyCH4III	ACNGT	3 cut(s)	390, 517, 977
HpyCH4IV	ACGT	2 cut(s)	862, 994
HpyCH4V	TGCA	2 cut(s)	449, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 19, 266, 617
HpyF3I	CTNAG	9 cut(s)	9, 99, 198, 270, 336, 471, 693, 708, 1097
HpySE526I	ACGT	2 cut(s)	862, 994
HspAI	GCGC	1 cut(s)	39
KpnI	GGTACC	1 cut(s)	976
Kzo9I	GATC	8 cut(s)	84, 142, 166, 262, 588, 841, 871, 1150
LmnI	GCTCC	2 cut(s)	113, 439
Lsp1109I	GCAGC	4 cut(s)	53, 223, 667, 716
LweI	GCATC	3 cut(s)	458, 607, 946
MaeI	CTAG	4 cut(s)	170, 741, 1029, 1047
MaeII	ACGT	2 cut(s)	862, 994
MaeIII	GTNAC	5 cut(s)	643, 815, 845, 990, 1023
MalI	GATC	8 cut(s)	86, 144, 168, 264, 590, 843, 873, 1152
MboI	GATC	8 cut(s)	84, 142, 166, 262, 588, 841, 871, 1150
MboII	GAAGA	8 cut(s)	74, 318, 737, 740, 770, 933, 963, 1035
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	2 cut(s)	49, 1156
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	4 cut(s)	89, 188, 625, 1042
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	808
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	2 cut(s)	312, 501
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	2 cut(s)	374, 775
MspR9I	CCNGG	1 cut(s)	943
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	943
MwoI	GCNNNNNNNGC	4 cut(s)	14, 19, 266, 617
NcoI	CCATGG	1 cut(s)	1037
NdeII	GATC	8 cut(s)	84, 142, 166, 262, 588, 841, 871, 1150
NlaIV	GGNNCC	4 cut(s)	115, 348, 558, 974
NmuCI	GTSAC	5 cut(s)	643, 815, 845, 990, 1023
NspI	RCATGY	2 cut(s)	180, 236
PaeI	GCATGC	2 cut(s)	180, 236
PagI	TCATGA	2 cut(s)	139, 1117
PctI	GAATGC	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	808
PfoI	TCCNGGA	1 cut(s)	941
PkrI	GCNGC	4 cut(s)	43, 238, 657, 706
PleI	GAGTC	4 cut(s)	89, 188, 625, 1041
PpsI	GAGTC	4 cut(s)	89, 188, 625, 1041
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	941
PspEI	GGTNACC	1 cut(s)	1023
PspGI	CCWGG	1 cut(s)	941
PspN4I	GGNNCC	4 cut(s)	115, 348, 558, 974
PspPI	GGNCC	2 cut(s)	676, 939
PsuI	RGATCY	1 cut(s)	588
PvuII	CAGCTG	2 cut(s)	374, 775
RsaI	GTAC	3 cut(s)	77, 698, 974
RsaNI	GTAC	3 cut(s)	76, 697, 973
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	312, 501
SatI	GCNGC	4 cut(s)	42, 237, 656, 705
Sau3AI	GATC	8 cut(s)	84, 142, 166, 262, 588, 841, 871, 1150
Sau96I	GGNCC	2 cut(s)	676, 939
SchI	GAGTC	4 cut(s)	89, 188, 625, 1042
ScrFI	CCNGG	1 cut(s)	943
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	3 cut(s)	458, 607, 946
SfcI	CTRYAG	2 cut(s)	527, 1182
SinI	GGWCC	2 cut(s)	676, 939
SphI	GCATGC	2 cut(s)	180, 236
Sse9I	AATT	2 cut(s)	49, 1156
SsiI	CCGC	4 cut(s)	111, 434, 1091, 1124
SspMI	CTAG	4 cut(s)	170, 741, 1029, 1047
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	941
StyI	CCWWGG	5 cut(s)	227, 248, 1028, 1037, 1199
TaaI	ACNGT	3 cut(s)	390, 517, 977
TaiI	ACGT	2 cut(s)	865, 997
TaqI	TCGA	4 cut(s)	216, 856, 982, 1149
TasI	AATT	2 cut(s)	49, 1156
TatI	WGTACW	1 cut(s)	696
Tru1I	TTAA	2 cut(s)	312, 501
Tru9I	TTAA	2 cut(s)	312, 501
TscAI	CASTG	3 cut(s)	483, 652, 1239
TseFI	GTSAC	5 cut(s)	643, 815, 845, 990, 1023
TseI	GCWGC	4 cut(s)	41, 236, 655, 704
Tsp45I	GTSAC	5 cut(s)	643, 815, 845, 990, 1023
TspDTI	ATGAA	3 cut(s)	480, 588, 1134
TspGWI	ACGGA	2 cut(s)	71, 778
TspRI	CASTG	3 cut(s)	483, 652, 1239
VpaK11BI	GGWCC	2 cut(s)	676, 939
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	2 cut(s)	180, 236
XmaJI	CCTAGG	1 cut(s)	1028
XmnI	GAANNNNTTC	1 cut(s)	808
XspI	CTAG	4 cut(s)	170, 741, 1029, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.