MD01G1182700.v1.1

Luc7-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0005092
Physical Location & Seq
Forward (+)
28122113 .. 28126313
4201 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1182700.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGGATGCTCAGAGAGCTCTGCTGGACGAACTTATGGGCTCAGCTCGTAATTTGACGGAGGAGGAGAGAAAGGGGTACAAGGAAATTACTTGGGATGATAAGGAGGTTTGTAAAGCCTATATGGTTCGATTTTGTCCTCACGATCTCTTCGTTAACACTCGAAGCGATCTAGGACCTTGCTCTAAAATACATGACCCAAAGTTGAAAGAAAGTTTTGAAGAGTCCCCGCGGCATGATGCTTATGTATCCAAGTTTGAAGCTGAACTTGCTCACTTTTGTGAGAAATTGGTGATGGATTTGGATAGAAGAGTAAAGCGTGGGAGAGAACGCCTTGCTCAGGAGGTGGAACCTGCGCCAGCTCCTCCACTGTCAGCTGAAAAGTCTGAACAACTATCTGTTCTGGAGGAAAAGATAAAGAACTTACTGGAACAAGTGGAGGCCCTAGGTGAAGCTGGAAAGGTCGATGAAGCTGAAGCACTCATGAGAAAGGTGGATATGCTTAATTCCGAGAAGACAGCCTTGGATCAGCAGCCCCAGAATGATAAAGTGTTGATGCTGGCACAGGAGAAAAAAATGGCACTCTGTGAGATCTGTGGTTCATTTCTTGTGGCCAATGATGCTGTAGAGAGAACTCAGTCTCATGTTACAGGGAAACAGCATATTGGTTATGGCATGGTTCGGGATTTTATAGCTGAGTTCAAGGAATCTAAAGAGAAGGCAAGGGAAGAAGAAAGGTTAGCGAGGGAGAAAGAAGCAGAAGAACGGAGGAAACAGAGGGAGAAGGAACAGGAGGATAGAAGGAGAAGTAATTCAAGTGATAGGGACAGGTATCGTGATAGAGATCGTGACAGGGAGCGGGACAGATATCGAGAACGAGACTCGGATCATGAAAGGTCGAGGGAGTGGAATGGCAGAGGTAGTCGGGATGGAGCGAGAGGGGTGGACCATAGGTCCAGAAATGGAAGAGATGGAGGAAGGGATAGGTACCGTGATCGAAGCAGGTCACGTTCCCCTGTTAGGCACAGTCACAAAAGGTCACCTAGAAGTCCAGTTCGCCCGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LUC7

Protein Analysis

355

Amino Acids

41.57

Weight (kDa)

8.4

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 2 - 250 1.6e-87 LUC7 N_terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 358, 990
Acc65I GGTACC 1 cut(s) 984
AccB1I GGYRCC 1 cut(s) 984
AccBSI CCGCTC 1 cut(s) 856
AccII CGCG 1 cut(s) 229
AciI CCGC 3 cut(s) 227, 229, 856
AclWI GGATC 2 cut(s) 531, 891
AcoI YGGCCR 1 cut(s) 609
AcuI CTGAAG 1 cut(s) 492
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 2 cut(s) 77, 986
AfiI CCNNNNNNNGG 2 cut(s) 337, 1017
AgsI TTSAA 5 cut(s) 205, 218, 257, 700, 813
AhdI GACNNNNNGTC 1 cut(s) 949
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AleI CACNNNNGTG 1 cut(s) 276
AluBI AGCT 8 cut(s) 17, 44, 260, 359, 374, 452, 470, 692
AluI AGCT 8 cut(s) 17, 44, 260, 359, 374, 452, 470, 692
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 642, 870
AlwI GGATC 2 cut(s) 531, 891
AoxI GGCC 2 cut(s) 438, 609
ApeKI GCWGC 1 cut(s) 529
Asp700I GAANNNNTTC 1 cut(s) 808
Asp718I GGTACC 1 cut(s) 984
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 4 cut(s) 173, 439, 943, 951
AsuHPI GGTGA 3 cut(s) 301, 458, 1029
AvaII GGWCC 3 cut(s) 173, 943, 951
AvrII CCTAGG 1 cut(s) 442
BalI TGGCCA 1 cut(s) 611
BanI GGYRCC 1 cut(s) 984
BanII GRGCYC 2 cut(s) 19, 41
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 541
BccI CCATC 3 cut(s) 286, 920, 962
BciVI GTATCC 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 642, 870
BfaI CTAG 3 cut(s) 170, 443, 1041
BfmI CTRYAG 1 cut(s) 621
BfuAI ACCTGC 2 cut(s) 358, 990
BfuI GTATCC 1 cut(s) 256
BglII AGATCT 1 cut(s) 588
BisI GCNGC 2 cut(s) 230, 530
BlnI CCTAGG 1 cut(s) 442
BlpI GCTNAGC 1 cut(s) 40
BlsI GCNGC 2 cut(s) 231, 531
Bme18I GGWCC 3 cut(s) 173, 943, 951
BmeRI GACNNNNNGTC 1 cut(s) 949
BmgT120I GGNCC 4 cut(s) 173, 439, 943, 951
BmiI GGNNCC 2 cut(s) 348, 986
BmsI GCATC 3 cut(s) 226, 543, 607
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 40
BsaBI GATNNNNATC 1 cut(s) 840
BsaJI CCNNGG 3 cut(s) 227, 442, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 1017
Bse1I ACTGG 2 cut(s) 429, 1049
Bse8I GATNNNNATC 1 cut(s) 840
BseDI CCNNGG 3 cut(s) 227, 442, 519
BseGI GGATG 3 cut(s) 10, 100, 931
BseJI GATNNNNATC 1 cut(s) 840
BseLI CCNNNNNNNGG 2 cut(s) 337, 1017
BseMII CTCAG 5 cut(s) 23, 54, 350, 647, 684
BseNI ACTGG 2 cut(s) 429, 1049
BseRI GAGGAG 3 cut(s) 74, 77, 351
BseXI GCAGC 1 cut(s) 541
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 440, 611
BshNI GGYRCC 1 cut(s) 984
BsiHKAI GWGCWC 1 cut(s) 19
BslFI GGGAC 3 cut(s) 208, 836, 872
BslI CCNNNNNNNGG 2 cut(s) 337, 1017
BsmAI GTCTC 2 cut(s) 642, 870
BsmFI GGGAC 3 cut(s) 208, 836, 872
BsnI GGCC 2 cut(s) 440, 611
Bsp1286I GDGCHC 2 cut(s) 19, 41
Bsp143I GATC 7 cut(s) 142, 166, 523, 588, 841, 883, 991
Bsp1720I GCTNAGC 1 cut(s) 40
BspACI CCGC 3 cut(s) 227, 229, 856
BspANI GGCC 2 cut(s) 440, 611
BspCNI CTCAG 5 cut(s) 22, 53, 349, 646, 685
BspFNI CGCG 1 cut(s) 229
BspHI TCATGA 2 cut(s) 480, 886
BspLI GGNNCC 2 cut(s) 348, 986
BspMI ACCTGC 2 cut(s) 358, 990
BspPI GGATC 2 cut(s) 531, 891
BspT107I GGYRCC 1 cut(s) 984
BsrBI CCGCTC 1 cut(s) 856
BsrI ACTGG 2 cut(s) 429, 1049
BssECI CCNNGG 3 cut(s) 227, 442, 519
BssMI GATC 7 cut(s) 142, 166, 523, 588, 841, 883, 991
BssT1I CCWWGG 2 cut(s) 442, 519
Bst4CI ACNGT 3 cut(s) 369, 989, 1025
Bst6I CTCTTC 4 cut(s) 152, 213, 301, 958
BstC8I GCNNGC 2 cut(s) 357, 558
BstDEI CTNAG 5 cut(s) 9, 40, 336, 633, 693
BstDSI CCRYGG 1 cut(s) 227
BstEII GGTNACC 1 cut(s) 1035
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 3 cut(s) 10, 100, 931
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 7 cut(s) 145, 169, 526, 591, 844, 886, 994
BstMAI GTCTC 2 cut(s) 642, 870
BstMBI GATC 7 cut(s) 142, 166, 523, 588, 841, 883, 991
BstMWI GCNNNNNNNGC 3 cut(s) 14, 266, 617
BstPI GGTNACC 1 cut(s) 1035
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 541
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 588
BstYI RGATCY 1 cut(s) 588
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 2 cut(s) 440, 611
BtgI CCRYGG 1 cut(s) 227
BtsCI GGATG 3 cut(s) 10, 100, 931
BtsIMutI CAGTG 1 cut(s) 365
BveI ACCTGC 2 cut(s) 358, 990
Cac8I GCNNGC 2 cut(s) 357, 558
CciI TCATGA 2 cut(s) 480, 886
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 4 cut(s) 173, 439, 943, 951
Cfr42I CCGCGG 1 cut(s) 230
Csp6I GTAC 2 cut(s) 76, 985
CviAII CATG 6 cut(s) 191, 233, 481, 641, 673, 887
CviQI GTAC 2 cut(s) 76, 985
DdeI CTNAG 5 cut(s) 9, 40, 336, 633, 693
DpnI GATC 7 cut(s) 144, 168, 525, 590, 843, 885, 993
DpnII GATC 7 cut(s) 142, 166, 523, 588, 841, 883, 991
DraIII CACNNNGTG 1 cut(s) 584
DriI GACNNNNNGTC 1 cut(s) 949
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 4 cut(s) 152, 213, 301, 958
Eam1105I GACNNNNNGTC 1 cut(s) 949
EarI CTCTTC 4 cut(s) 152, 213, 301, 958
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 442, 519
Eco24I GRGCYC 2 cut(s) 19, 41
Eco32I GATATC 1 cut(s) 866
Eco47I GGWCC 3 cut(s) 173, 943, 951
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 492
Eco91I GGTNACC 1 cut(s) 1035
EcoICRI GAGCTC 1 cut(s) 17
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoO109I RGGNCCY 2 cut(s) 173, 439
EcoO65I GGTNACC 1 cut(s) 1035
EcoRV GATATC 1 cut(s) 866
EcoT14I CCWWGG 2 cut(s) 442, 519
EcoT38I GRGCYC 2 cut(s) 19, 41
ErhI CCWWGG 2 cut(s) 442, 519
FaeI CATG 6 cut(s) 194, 236, 484, 644, 676, 890
FalI AAGNNNNNCTT 4 cut(s) 249, 281, 503, 535
FaqI GGGAC 3 cut(s) 208, 836, 872
FatI CATG 6 cut(s) 190, 232, 480, 640, 672, 886
FauI CCCGC 2 cut(s) 234, 849
Fnu4HI GCNGC 2 cut(s) 230, 530
FokI GGATG 3 cut(s) 17, 107, 938
FriOI GRGCYC 2 cut(s) 19, 41
Fsp4HI GCNGC 2 cut(s) 230, 530
FspBI CTAG 3 cut(s) 170, 443, 1041
GlaI GCGC 1 cut(s) 354
GluI GCNGC 2 cut(s) 230, 530
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 2 cut(s) 440, 611
HhaI GCGC 1 cut(s) 355
Hin1II CATG 6 cut(s) 194, 236, 484, 644, 676, 890
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 3 cut(s) 221, 704, 878
HpaI GTTAAC 1 cut(s) 154
HphI GGTGA 3 cut(s) 301, 458, 1029
Hpy166II GTNNAC 2 cut(s) 154, 943
Hpy188I TCNGA 4 cut(s) 12, 385, 508, 883
Hpy8I GTNNAC 2 cut(s) 154, 943
HpyAV CCTTC 4 cut(s) 709, 775, 792, 969
HpyCH4III ACNGT 3 cut(s) 369, 989, 1025
HpyCH4IV ACGT 1 cut(s) 1006
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 266, 617
HpyF3I CTNAG 5 cut(s) 9, 40, 336, 633, 693
HpySE526I ACGT 1 cut(s) 1006
Hsp92II CATG 6 cut(s) 194, 236, 484, 644, 676, 890
HspAI GCGC 1 cut(s) 353
KpnI GGTACC 1 cut(s) 988
KspAI GTTAAC 1 cut(s) 154
KspI CCGCGG 1 cut(s) 230
Kzo9I GATC 7 cut(s) 142, 166, 523, 588, 841, 883, 991
LmnI GCTCC 3 cut(s) 364, 853, 929
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 3 cut(s) 226, 543, 607
MaeI CTAG 3 cut(s) 170, 443, 1041
MaeII ACGT 1 cut(s) 1006
MaeIII GTNAC 5 cut(s) 643, 845, 1002, 1025, 1035
MalI GATC 7 cut(s) 144, 168, 525, 590, 843, 885, 993
MbiI CCGCTC 1 cut(s) 856
MboI GATC 7 cut(s) 142, 166, 523, 588, 841, 883, 991
MboII GAAGA 8 cut(s) 139, 230, 318, 523, 737, 740, 770, 975
MflI RGATCY 1 cut(s) 588
MhlI GDGCHC 2 cut(s) 19, 41
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 5 cut(s) 49, 84, 284, 502, 808
MluNI TGGCCA 1 cut(s) 611
MlyI GAGTC 2 cut(s) 230, 872
Mox20I TGGCCA 1 cut(s) 611
MroXI GAANNNNTTC 1 cut(s) 808
MscI TGGCCA 1 cut(s) 611
MseI TTAA 2 cut(s) 153, 501
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 611
MspA1I CMGCKG 2 cut(s) 229, 374
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 3 cut(s) 14, 266, 617
NdeII GATC 7 cut(s) 142, 166, 523, 588, 841, 883, 991
NlaIII CATG 6 cut(s) 194, 236, 484, 644, 676, 890
NlaIV GGNNCC 2 cut(s) 348, 986
NmuCI GTSAC 4 cut(s) 845, 1002, 1025, 1035
OliI CACNNNNGTG 1 cut(s) 276
PagI TCATGA 2 cut(s) 480, 886
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 808
PfeI GAWTC 1 cut(s) 704
PkrI GCNGC 2 cut(s) 231, 531
PleI GAGTC 2 cut(s) 229, 872
PpsI GAGTC 2 cut(s) 229, 872
PpuMI RGGWCCY 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 19
Psp5II RGGWCCY 1 cut(s) 173
PspEI GGTNACC 1 cut(s) 1035
PspN4I GGNNCC 2 cut(s) 348, 986
PspPI GGNCC 4 cut(s) 173, 439, 943, 951
PspPPI RGGWCCY 1 cut(s) 173
PsuI RGATCY 1 cut(s) 588
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 2 cut(s) 77, 986
RsaNI GTAC 2 cut(s) 76, 985
RseI CAYNNNNRTG 1 cut(s) 276
SacI GAGCTC 1 cut(s) 19
SacII CCGCGG 1 cut(s) 230
SaqAI TTAA 2 cut(s) 153, 501
SatI GCNGC 2 cut(s) 230, 530
Sau3AI GATC 7 cut(s) 142, 166, 523, 588, 841, 883, 991
Sau96I GGNCC 4 cut(s) 173, 439, 943, 951
SchI GAGTC 2 cut(s) 230, 872
SduI GDGCHC 2 cut(s) 19, 41
SfaNI GCATC 3 cut(s) 226, 543, 607
SfcI CTRYAG 1 cut(s) 621
Sfr303I CCGCGG 1 cut(s) 230
SgrBI CCGCGG 1 cut(s) 230
SinI GGWCC 3 cut(s) 173, 943, 951
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 5 cut(s) 49, 84, 284, 502, 808
SsiI CCGC 3 cut(s) 227, 229, 856
SspMI CTAG 3 cut(s) 170, 443, 1041
SstI GAGCTC 1 cut(s) 19
StyI CCWWGG 2 cut(s) 442, 519
TaaI ACNGT 3 cut(s) 369, 989, 1025
TaiI ACGT 1 cut(s) 1009
TaqI TCGA 6 cut(s) 127, 160, 462, 868, 896, 994
TasI AATT 5 cut(s) 49, 84, 284, 502, 808
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 2 cut(s) 153, 501
Tru9I TTAA 2 cut(s) 153, 501
TscAI CASTG 1 cut(s) 372
TseFI GTSAC 4 cut(s) 845, 1002, 1025, 1035
TseI GCWGC 1 cut(s) 529
Tsp45I GTSAC 4 cut(s) 845, 1002, 1025, 1035
TspDTI ATGAA 3 cut(s) 480, 588, 903
TspGWI ACGGA 2 cut(s) 71, 778
TspRI CASTG 1 cut(s) 372
VpaK11BI GGWCC 3 cut(s) 173, 943, 951
XagI CCTNNNNNAGG 1 cut(s) 335
XmaJI CCTAGG 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 808
XspI CTAG 3 cut(s) 170, 443, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.