Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005092

Physical Location & Seq

Genomic Coordinates Forward (+)

18007374 .. 18010100

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19290.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATGCTCAGAGAGCTCTGCTGGACGAACTTATGGGCTCAGCTCGTAATTTGACAGAGGAGGAGAGAAAGGGGTACAAGGAAATTACTTGGGATGATAAGGAGGTTTGTGGAGCCTATATGGTTCGATTTTGTCCTCACGATCTCTTCGTTAACACTCGAAGCGATCTAGGACCTTGCTCTAAAATACATGACCCAAAGTTGAAGGAAAGTTTTGAAGAGTCCCCACGGCATGATGCTTATGTACCCAAGTTTGAAGCTGAACTTGCTCACTTTTGTGAGAAATTGGTGATGGATTTAGATAGAAGAGTAAAGCGTGGGCGAGAACGCCTTGCTCAGGAGGTGGAACCTGCGCCAGCTCCTCCACTGTCAGCTGAAAAGTCTGAACAGCTATCTGTTCTGGAGGAAAAGATAAAGAACTTACTGGAACAAGTGGAGGCCCTAGGTGAAGCTGGAAAGGTCGATGAAGCTGAAGCACTCATGAGAAAGGTGGATATGCTTAATTCTGAAAAGACAGCCTTGGCTCAGCCGCCCCAGAATGATAAAGTGTTGATGCTGGCACAGGAGAAAAAAATGGCACTCTGTGAGATCTGTGGTTCATTTCTTGTGGCCAATGATGCTGTAGAGAGAACTCAGTCTCATGTTACAGGGAAGCAGCATATTGGTTATGGCATGGTTCGGGATTTTATCACTGAGTTCAAGGAATCTAAGGAGAAGGCAAGGGAAGAAGAAAGGTTAGCGAGGGAGAAAGAAGAAGAAGAACGGAGGAAACAAAGGGAGAAGGAACAGGAGGATAGAAGGAGAAGTAATTCAAGTGATATGGACAGGTATCGTGATAGAGATCGTGACAGGGAGCGGGACAGATATCGGGAACGAGACTCAGATTATGAAAGGTCAAGGGAGTGGAATGGCAGAGGTAGTCGGGATGGAGGGAGAGGGGTGGACTATAGGTCCAGAAATGGAAGAGATGGAGGAAGGGATAGGTACCGTGATCAAAGCAGGTCACGTTCCCCTGTTAGGCACAGTCACAGGAGGTCACCTAGAAGTCCAGTTCGCCCGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LUC7

Protein Analysis

355

Amino Acids

41.51

Weight (kDa)

7.14

Isoelectric Point (pI)

57.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51410 AT5G51410 AT5G51410 AT5G51410 AT5G51410
fragaria_vesca	FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480
malus_domestica	MD01G1182700.v1.1 MD07G1253500.v1.1
prunus_persica	Prupe.2G276900_v2.0.a1 Prupe.2G276900_v2.0.a1
pyrus_communis	pycom01g19290 pycom07g22620
rosa_chinensis	RchiOBHm_Chr1g0374271
rosa_laevigata	RLG00000026747
rosa_multiflora	Rmu_sc0043135.1_g000001 Rmu_ssc0000007.1_g000023
rosa_roxburghii	Rroxscaffold_4G00283590
rosa_rugosa	Rorug01G0382500 Rorug01G0382600
rosa_samantha	Rh1BG357400
rosa_wichuraiana	Rw1G034070 Rw1G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	358, 990
Acc65I	GGTACC	1 cut(s)	984
AccB1I	GGYRCC	1 cut(s)	984
AccBSI	CCGCTC	1 cut(s)	856
AciI	CCGC	3 cut(s)	530, 856, 1058
AcoI	YGGCCR	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	492
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	3 cut(s)	77, 246, 986
AfiI	CCNNNNNNNGG	2 cut(s)	337, 1017
AgsI	TTSAA	5 cut(s)	205, 218, 257, 700, 813
AhdI	GACNNNNNGTC	1 cut(s)	949
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	8 cut(s)	17, 44, 260, 359, 374, 391, 452, 470
AluI	AGCT	8 cut(s)	17, 44, 260, 359, 374, 391, 452, 470
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	642, 870
AoxI	GGCC	2 cut(s)	438, 609
ApeKI	GCWGC	1 cut(s)	655
Asp700I	GAANNNNTTC	1 cut(s)	808
Asp718I	GGTACC	1 cut(s)	984
AspA2I	CCTAGG	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	3 cut(s)	173, 439, 951
AsuHPI	GGTGA	3 cut(s)	301, 458, 1029
AvaII	GGWCC	2 cut(s)	173, 951
AvrII	CCTAGG	1 cut(s)	442
BalI	TGGCCA	1 cut(s)	611
BanI	GGYRCC	1 cut(s)	984
BanII	GRGCYC	2 cut(s)	19, 41
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	3 cut(s)	286, 920, 962
BceAI	ACGGC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	991
BcoDI	GTCTC	2 cut(s)	642, 870
BfaI	CTAG	3 cut(s)	170, 443, 1041
BfmI	CTRYAG	2 cut(s)	621, 946
BfuAI	ACCTGC	2 cut(s)	358, 990
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	2 cut(s)	530, 656
BlnI	CCTAGG	1 cut(s)	442
BlpI	GCTNAGC	2 cut(s)	40, 525
BlsI	GCNGC	2 cut(s)	531, 657
Bme18I	GGWCC	2 cut(s)	173, 951
BmeRI	GACNNNNNGTC	1 cut(s)	949
BmgT120I	GGNCC	3 cut(s)	173, 439, 951
BmiI	GGNNCC	3 cut(s)	115, 348, 986
BmsI	GCATC	3 cut(s)	226, 543, 607
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	336
Bpu1102I	GCTNAGC	2 cut(s)	40, 525
BsaBI	GATNNNNATC	1 cut(s)	840
BsaJI	CCNNGG	3 cut(s)	227, 442, 519
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 1017
Bse1I	ACTGG	2 cut(s)	429, 1049
Bse8I	GATNNNNATC	1 cut(s)	840
BseDI	CCNNGG	3 cut(s)	227, 442, 519
BseGI	GGATG	3 cut(s)	10, 100, 931
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	2 cut(s)	337, 1017
BseMII	CTCAG	7 cut(s)	23, 54, 350, 539, 647, 684, 894
BseNI	ACTGG	2 cut(s)	429, 1049
BseRI	GAGGAG	3 cut(s)	74, 77, 351
BseXI	GCAGC	1 cut(s)	667
BshFI	GGCC	2 cut(s)	440, 611
BshNI	GGYRCC	1 cut(s)	984
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	208, 872
BslI	CCNNNNNNNGG	2 cut(s)	337, 1017
BsmAI	GTCTC	2 cut(s)	642, 870
BsmFI	GGGAC	2 cut(s)	208, 872
BsnI	GGCC	2 cut(s)	440, 611
Bsp1286I	GDGCHC	2 cut(s)	19, 41
Bsp143I	GATC	5 cut(s)	142, 166, 588, 841, 991
Bsp1720I	GCTNAGC	2 cut(s)	40, 525
BspACI	CCGC	3 cut(s)	530, 856, 1058
BspANI	GGCC	2 cut(s)	440, 611
BspCNI	CTCAG	7 cut(s)	22, 53, 349, 538, 646, 685, 893
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	3 cut(s)	115, 348, 986
BspMI	ACCTGC	2 cut(s)	358, 990
BspT107I	GGYRCC	1 cut(s)	984
BsrBI	CCGCTC	1 cut(s)	856
BsrI	ACTGG	2 cut(s)	429, 1049
BssECI	CCNNGG	3 cut(s)	227, 442, 519
BssMI	GATC	5 cut(s)	142, 166, 588, 841, 991
BssT1I	CCWWGG	2 cut(s)	442, 519
Bst4CI	ACNGT	3 cut(s)	369, 989, 1025
Bst6I	CTCTTC	4 cut(s)	152, 213, 301, 958
BstC8I	GCNNGC	3 cut(s)	357, 558, 1058
BstDEI	CTNAG	8 cut(s)	9, 40, 336, 525, 633, 693, 708, 880
BstDSI	CCRYGG	1 cut(s)	227
BstEII	GGTNACC	1 cut(s)	1035
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	10, 100, 931
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	5 cut(s)	145, 169, 591, 844, 994
BstMAI	GTCTC	2 cut(s)	642, 870
BstMBI	GATC	5 cut(s)	142, 166, 588, 841, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 266, 617
BstPI	GGTNACC	1 cut(s)	1035
BstSFI	CTRYAG	2 cut(s)	621, 946
BstV1I	GCAGC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	440, 611
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	3 cut(s)	10, 100, 931
BtsIMutI	CAGTG	2 cut(s)	365, 690
BveI	ACCTGC	2 cut(s)	358, 990
Cac8I	GCNNGC	3 cut(s)	357, 558, 1058
CciI	TCATGA	1 cut(s)	480
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	3 cut(s)	173, 439, 951
Csp6I	GTAC	3 cut(s)	76, 245, 985
CviAII	CATG	5 cut(s)	191, 233, 481, 641, 673
CviQI	GTAC	3 cut(s)	76, 245, 985
DdeI	CTNAG	8 cut(s)	9, 40, 336, 525, 633, 693, 708, 880
DpnI	GATC	5 cut(s)	144, 168, 590, 843, 993
DpnII	GATC	5 cut(s)	142, 166, 588, 841, 991
DraIII	CACNNNGTG	1 cut(s)	584
DriI	GACNNNNNGTC	1 cut(s)	949
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	4 cut(s)	152, 213, 301, 958
Eam1105I	GACNNNNNGTC	1 cut(s)	949
EarI	CTCTTC	4 cut(s)	152, 213, 301, 958
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	442, 519
Eco24I	GRGCYC	2 cut(s)	19, 41
Eco32I	GATATC	1 cut(s)	866
Eco47I	GGWCC	2 cut(s)	173, 951
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	492
Eco91I	GGTNACC	1 cut(s)	1035
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoO109I	RGGNCCY	2 cut(s)	173, 439
EcoO65I	GGTNACC	1 cut(s)	1035
EcoRV	GATATC	1 cut(s)	866
EcoT14I	CCWWGG	2 cut(s)	442, 519
EcoT38I	GRGCYC	2 cut(s)	19, 41
ErhI	CCWWGG	2 cut(s)	442, 519
FaeI	CATG	5 cut(s)	194, 236, 484, 644, 676
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 503, 535
FaqI	GGGAC	2 cut(s)	208, 872
FatI	CATG	5 cut(s)	190, 232, 480, 640, 672
FauI	CCCGC	1 cut(s)	849
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	2 cut(s)	530, 656
FokI	GGATG	3 cut(s)	17, 107, 938
FriOI	GRGCYC	2 cut(s)	19, 41
Fsp4HI	GCNGC	2 cut(s)	530, 656
FspBI	CTAG	3 cut(s)	170, 443, 1041
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	2 cut(s)	530, 656
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	440, 611
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	5 cut(s)	194, 236, 484, 644, 676
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	3 cut(s)	221, 704, 878
HpaI	GTTAAC	1 cut(s)	154
HphI	GGTGA	3 cut(s)	301, 458, 1029
Hpy166II	GTNNAC	2 cut(s)	154, 943
Hpy188I	TCNGA	4 cut(s)	12, 385, 508, 883
Hpy8I	GTNNAC	2 cut(s)	154, 943
HpyAV	CCTTC	5 cut(s)	199, 709, 775, 792, 969
HpyCH4III	ACNGT	3 cut(s)	369, 989, 1025
HpyCH4IV	ACGT	1 cut(s)	1006
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 266, 617
HpyF3I	CTNAG	8 cut(s)	9, 40, 336, 525, 633, 693, 708, 880
HpySE526I	ACGT	1 cut(s)	1006
Hsp92II	CATG	5 cut(s)	194, 236, 484, 644, 676
HspAI	GCGC	1 cut(s)	353
KpnI	GGTACC	1 cut(s)	988
Ksp22I	TGATCA	1 cut(s)	991
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	142, 166, 588, 841, 991
LmnI	GCTCC	3 cut(s)	113, 364, 853
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	3 cut(s)	226, 543, 607
MaeI	CTAG	3 cut(s)	170, 443, 1041
MaeII	ACGT	1 cut(s)	1006
MaeIII	GTNAC	5 cut(s)	643, 845, 1002, 1025, 1035
MalI	GATC	5 cut(s)	144, 168, 590, 843, 993
MbiI	CCGCTC	1 cut(s)	856
MboI	GATC	5 cut(s)	142, 166, 588, 841, 991
MboII	GAAGA	9 cut(s)	139, 230, 318, 737, 740, 764, 767, 770, 975
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	2 cut(s)	19, 41
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	5 cut(s)	49, 84, 284, 502, 808
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	2 cut(s)	230, 872
Mox20I	TGGCCA	1 cut(s)	611
MroXI	GAANNNNTTC	1 cut(s)	808
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	2 cut(s)	153, 501
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	14, 266, 617
NdeII	GATC	5 cut(s)	142, 166, 588, 841, 991
NlaIII	CATG	5 cut(s)	194, 236, 484, 644, 676
NlaIV	GGNNCC	3 cut(s)	115, 348, 986
NmuCI	GTSAC	4 cut(s)	845, 1002, 1025, 1035
OliI	CACNNNNGTG	1 cut(s)	276
PagI	TCATGA	1 cut(s)	480
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	808
PfeI	GAWTC	1 cut(s)	704
PkrI	GCNGC	2 cut(s)	531, 657
PleI	GAGTC	2 cut(s)	229, 872
PpsI	GAGTC	2 cut(s)	229, 872
PpuMI	RGGWCCY	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	173
PspEI	GGTNACC	1 cut(s)	1035
PspN4I	GGNNCC	3 cut(s)	115, 348, 986
PspPI	GGNCC	3 cut(s)	173, 439, 951
PspPPI	RGGWCCY	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	3 cut(s)	77, 246, 986
RsaNI	GTAC	3 cut(s)	76, 245, 985
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	2 cut(s)	153, 501
SatI	GCNGC	2 cut(s)	530, 656
Sau3AI	GATC	5 cut(s)	142, 166, 588, 841, 991
Sau96I	GGNCC	3 cut(s)	173, 439, 951
SchI	GAGTC	2 cut(s)	230, 872
SduI	GDGCHC	2 cut(s)	19, 41
SfaNI	GCATC	3 cut(s)	226, 543, 607
SfcI	CTRYAG	2 cut(s)	621, 946
SinI	GGWCC	2 cut(s)	173, 951
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	5 cut(s)	49, 84, 284, 502, 808
SsiI	CCGC	3 cut(s)	530, 856, 1058
SspMI	CTAG	3 cut(s)	170, 443, 1041
SstI	GAGCTC	1 cut(s)	19
StyI	CCWWGG	2 cut(s)	442, 519
TaaI	ACNGT	3 cut(s)	369, 989, 1025
TaiI	ACGT	1 cut(s)	1009
TaqI	TCGA	3 cut(s)	127, 160, 462
TasI	AATT	5 cut(s)	49, 84, 284, 502, 808
TauI	GCSGC	1 cut(s)	532
TfiI	GAWTC	1 cut(s)	704
Tru1I	TTAA	2 cut(s)	153, 501
Tru9I	TTAA	2 cut(s)	153, 501
TscAI	CASTG	2 cut(s)	372, 697
TseFI	GTSAC	4 cut(s)	845, 1002, 1025, 1035
TseI	GCWGC	1 cut(s)	655
Tsp45I	GTSAC	4 cut(s)	845, 1002, 1025, 1035
TspDTI	ATGAA	3 cut(s)	480, 588, 903
TspGWI	ACGGA	1 cut(s)	778
TspRI	CASTG	2 cut(s)	372, 697
VpaK11BI	GGWCC	2 cut(s)	173, 951
XagI	CCTNNNNNAGG	1 cut(s)	335
XmaJI	CCTAGG	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	808
XspI	CTAG	3 cut(s)	170, 443, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.