Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005092

Physical Location & Seq

Genomic Coordinates Forward (+)

23866077 .. 23868425

Gene Structure 2349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATGCTCAGAGAGCTCTGCTGGACGAACTTATGGGCGCAGCTCGTAATTTGACGGAGGAGGAGAGAAGGGGGTACAAGGAAATTACTTGGGATGATAAGGAGGTTTGTGGAGCCTATATGGTTCGATTTTGTCCCCACGATCTCTTCGTTAACACTCGAAGCGATCTAGGACCTTGCCCTAAACTACATGACCCAAAGTTGAAAGAAAGTTTTGAAGAGTCCCCACGGCATGATGCTTATGTGCCCAAGTTTGAAGCTGATCTTGCTCACTTTTGTGAGAAATTGGTGATGGATTTAGATAGAAGAGTAAAGCGTGGGCGAGAACGCCTTGCTCAGGAGGTGGAACCTGCACCAGCACCTCCACTGTCAGCTGAAAAGTCTGAACAGCTCTCTGTTCTGGAGGAAAAGATAAAGAACTTACTGGAACAAGCAGAGGCTCTAGGTGAAGCTGGAAAGGTGGATGAAGCTGAAGCACTGATGAGAAAGGTGGATGTGCTCAATTCTGAGAAGACAGCATTGGCTCAGCCCCAGAATGATAAAGTGTTGATGCTGGCACAGGAGAAAAAAATGGCACTTTGTGAGATCTATCCTCGGTTCATTTCTAGTGGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LUC7

Protein Analysis

206

Amino Acids

23.31

Weight (kDa)

5.14

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51410 AT5G51410 AT5G51410 AT5G51410 AT5G51410
fragaria_vesca	FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480 FvH4_7g27480
malus_domestica	MD01G1182700.v1.1 MD07G1253500.v1.1
prunus_persica	Prupe.2G276900_v2.0.a1 Prupe.2G276900_v2.0.a1
pyrus_communis	pycom01g19290 pycom07g22620
rosa_chinensis	RchiOBHm_Chr1g0374271
rosa_laevigata	RLG00000026747
rosa_multiflora	Rmu_sc0043135.1_g000001 Rmu_ssc0000007.1_g000023
rosa_roxburghii	Rroxscaffold_4G00283590
rosa_rugosa	Rorug01G0382500 Rorug01G0382600
rosa_samantha	Rh1BG357400
rosa_wichuraiana	Rw1G034070 Rw1G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AcoI	YGGCCR	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	492
AdeI	CACNNNGTG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	3 cut(s)	205, 218, 257
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AleI	CACNNNNGTG	1 cut(s)	276
AluBI	AGCT	7 cut(s)	17, 44, 260, 374, 391, 452, 470
AluI	AGCT	7 cut(s)	17, 44, 260, 374, 391, 452, 470
Alw21I	GWGCWC	2 cut(s)	19, 501
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	301, 458
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	19, 501
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	245
BfaI	CTAG	3 cut(s)	170, 443, 606
BfuAI	ACCTGC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	115, 348
BmsI	GCATC	2 cut(s)	226, 540
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	336
Bpu1102I	GCTNAGC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	227, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	429
BseDI	CCNNGG	2 cut(s)	227, 593
BseGI	GGATG	4 cut(s)	10, 100, 469, 499
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	4 cut(s)	23, 350, 498, 539
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	2 cut(s)	74, 77
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	612
BsiHKAI	GWGCWC	2 cut(s)	19, 501
BslFI	GGGAC	2 cut(s)	120, 208
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmFI	GGGAC	2 cut(s)	120, 208
BsnI	GGCC	1 cut(s)	612
Bsp1286I	GDGCHC	3 cut(s)	19, 249, 501
Bsp143I	GATC	4 cut(s)	142, 166, 262, 585
Bsp1720I	GCTNAGC	1 cut(s)	525
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	4 cut(s)	22, 349, 499, 538
BspLI	GGNNCC	2 cut(s)	115, 348
BspMI	ACCTGC	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	2 cut(s)	227, 593
BssMI	GATC	4 cut(s)	142, 166, 262, 585
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	3 cut(s)	152, 213, 301
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	4 cut(s)	9, 336, 507, 525
BstDSI	CCRYGG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	4 cut(s)	10, 100, 469, 499
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	4 cut(s)	145, 169, 265, 588
BstMBI	GATC	4 cut(s)	142, 166, 262, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 266
BstSLI	GKGCMC	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	4 cut(s)	10, 100, 469, 499
BtsIMutI	CAGTG	2 cut(s)	365, 476
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	555
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	2 cut(s)	191, 233
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	4 cut(s)	9, 336, 507, 525
DpnI	GATC	4 cut(s)	144, 168, 264, 587
DpnII	GATC	4 cut(s)	142, 166, 262, 585
DraIII	CACNNNGTG	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	3 cut(s)	152, 213, 301
EarI	CTCTTC	3 cut(s)	152, 213, 301
Ecl136II	GAGCTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	17
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	2 cut(s)	194, 236
FaiI	YATR	6 cut(s)	35, 120, 122, 192, 234, 243
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FaqI	GGGAC	2 cut(s)	120, 208
FatI	CATG	2 cut(s)	190, 232
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	4 cut(s)	17, 107, 476, 506
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	3 cut(s)	170, 443, 606
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	612
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	194, 236
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	221
HpaI	GTTAAC	1 cut(s)	154
HphI	GGTGA	2 cut(s)	301, 458
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	12, 385, 508
Hpy188III	TCNNGA	2 cut(s)	338, 401
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 266
HpyF3I	CTNAG	4 cut(s)	9, 336, 507, 525
Hsp92II	CATG	2 cut(s)	194, 236
HspAI	GCGC	1 cut(s)	39
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	142, 166, 262, 585
LmnI	GCTCC	1 cut(s)	113
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	2 cut(s)	226, 540
MaeI	CTAG	3 cut(s)	170, 443, 606
MalI	GATC	4 cut(s)	144, 168, 264, 587
MboI	GATC	4 cut(s)	142, 166, 262, 585
MboII	GAAGA	4 cut(s)	139, 230, 318, 523
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	3 cut(s)	19, 249, 501
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	4 cut(s)	49, 84, 284, 502
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	1 cut(s)	230
MnlI	CCTC	8 cut(s)	52, 55, 97, 334, 372, 397, 430, 603
Mox20I	TGGCCA	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	612
MspA1I	CMGCKG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	14, 266
NdeII	GATC	4 cut(s)	142, 166, 262, 585
NlaIII	CATG	2 cut(s)	194, 236
NlaIV	GGNNCC	2 cut(s)	115, 348
OliI	CACNNNNGTG	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	115, 348
PspPI	GGNCC	1 cut(s)	173
PspPPI	RGGWCCY	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	276
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	4 cut(s)	142, 166, 262, 585
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	3 cut(s)	19, 249, 501
SfaNI	GCATC	2 cut(s)	226, 540
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	276
Sse9I	AATT	4 cut(s)	49, 84, 284, 502
SspMI	CTAG	3 cut(s)	170, 443, 606
SstI	GAGCTC	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	127, 160
TasI	AATT	4 cut(s)	49, 84, 284, 502
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	2 cut(s)	372, 483
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	480, 589
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	372, 483
VpaK11BI	GGWCC	1 cut(s)	173
XagI	CCTNNNNNAGG	1 cut(s)	335
XspI	CTAG	3 cut(s)	170, 443, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.