Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011597

Physical Location & Seq

Genomic Coordinates Reverse (-)

21178898 .. 21179990

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTTCCTTTACACCAGGGAAATAAGCTGGTCTTCCAGATTTCAGCATCTAATCCTCACCACCAGAATTCATCAGAAGATAGAATTCTCGGTTATGCTTCTCCGGATGGCTGCAGCAGTACCGTGCTTAGCAACAACAGTAGCATGGCGGGGAAAAGGCGGCGACGGAAATCAGTGGTTGCAGGTTTGGATCAGACAGTTATTGAAAATTCAAAGGACAACAAGAAAATGATGATTCATAGGGAGAATGAGAGGCAAAGAAGGCAAGACATGGCTACCTTATATTCCTCTCTTAGATCCCTTCTCCCTCTCGAATTCGTCAAGGGAAAGCGTTCGACGTCTGATCACATGAACGAAGCTGTGAACTACATAAAACACCTCCAGAATAGGATAAAAACAATAGATGCAAAGAGAGATGAACTGAAGAAATTCCCTAAAACAAGCACTGTTATTGACCGTCGCTGCACTACGGGAAGCTCCTTGAATTCAGATATGGTGAATTTGTCTAGCTGTTTTACAGTCCAACCAAGTTGTGGTGGAGTTCAAATTTTGGTGAGTAGCGGCTTCAGAGAGGAGGGTTCACCACTCATCTCAATCTCAAGCGTTTTGGAAATGCTGCTTGAACAAGGGCTTACTGTTGTTAGTTGTCTCTCCTCCCAAGTAAATGAAAGACTCCTTCACAGTATCCAAATTGAGGTCAATGATGTGGAAACTATATATCTTTCTGCGCTGGAACAGAAGCTAGCTAAAGTGTTTCCAACATCCAGAAGTACTATCTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

262

Amino Acids

29.14

Weight (kDa)

9.42

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	80 - 128	8.7e-13	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28590
malus_domestica	MD12G1112400.v1.1
prunus_persica	Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1
pyrus_communis	pycom01g20270 pycom07g23840
rosa_chinensis	RchiOBHm_Chr1g0376001
rosa_laevigata	RLG00000026636
rosa_multiflora	Rmu_ssc0000116.1_g000013
rosa_roxburghii	Rroxscaffold_4G00282430
rosa_rugosa	Rorug01G0393600 Rorug01G0393600 Rorug01G0393600
rosa_samantha	Rh1AG404900 Rh1BG368400 Rh1CG381300 Rh1DG398300
rosa_wichuraiana	Rw1G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccIII	TCCGGA	1 cut(s)	103
AciI	CCGC	3 cut(s)	149, 160, 561
AclWI	GGATC	2 cut(s)	198, 291
AcsI	RAATTY	8 cut(s)	67, 84, 208, 314, 428, 484, 499, 546
AcuI	CTGAAG	2 cut(s)	443, 550
AcyI	GRCGYC	1 cut(s)	338
AfaI	GTAC	2 cut(s)	121, 772
AfiI	CCNNNNNNNGG	2 cut(s)	533, 694
AgsI	TTSAA	5 cut(s)	206, 213, 484, 545, 623
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	6 cut(s)	28, 359, 477, 510, 742, 746
AluI	AGCT	6 cut(s)	28, 359, 477, 510, 742, 746
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	2 cut(s)	198, 291
Aor13HI	TCCGGA	1 cut(s)	103
ApeKI	GCWGC	4 cut(s)	111, 114, 462, 616
ApoI	RAATTY	8 cut(s)	67, 84, 208, 314, 428, 484, 499, 546
Asp700I	GAANNNNTTC	2 cut(s)	331, 428
AspLEI	GCGC	1 cut(s)	730
AsuHPI	GGTGA	4 cut(s)	50, 508, 565, 573
AsuNHI	GCTAGC	1 cut(s)	742
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	4 cut(s)	98, 126, 449, 603
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	695
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	653
BfaI	CTAG	2 cut(s)	507, 743
BfmI	CTRYAG	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	695
BisI	GCNGC	6 cut(s)	112, 115, 161, 463, 562, 617
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	6 cut(s)	113, 116, 162, 464, 563, 618
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	56, 394
BmtI	GCTAGC	1 cut(s)	746
BpiI	GAAGAC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	583
BsaHI	GRCGYC	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 694
BseAI	TCCGGA	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	112, 761
BseLI	CCNNNNNNNGG	2 cut(s)	533, 694
BseRI	GAGGAG	2 cut(s)	587, 643
BseXI	GCAGC	4 cut(s)	98, 126, 449, 603
BsgI	GTGCAG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	533, 694
BsmAI	GTCTC	1 cut(s)	653
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	190, 296, 343
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	3 cut(s)	149, 160, 561
BspEI	TCCGGA	1 cut(s)	103
BspMAI	CTGCAG	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	173
BspOI	GCTAGC	1 cut(s)	746
BspPI	GGATC	2 cut(s)	198, 291
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	3 cut(s)	190, 296, 343
BssNI	GRCGYC	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	8 cut(s)	124, 140, 199, 448, 458, 520, 637, 683
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	744
BstDEI	CTNAG	2 cut(s)	128, 293
BstF5I	GGATG	2 cut(s)	112, 761
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	3 cut(s)	193, 299, 346
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	3 cut(s)	190, 296, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	4 cut(s)	98, 126, 449, 603
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	695
BtsCI	GGATG	2 cut(s)	112, 761
BtsIMutI	CAGTG	2 cut(s)	180, 444
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	744
CfoI	GCGC	1 cut(s)	730
Csp6I	GTAC	2 cut(s)	120, 771
CviAII	CATG	3 cut(s)	145, 271, 349
CviQI	GTAC	2 cut(s)	120, 771
DdeI	CTNAG	2 cut(s)	128, 293
DpnI	GATC	3 cut(s)	192, 298, 345
DpnII	GATC	3 cut(s)	190, 296, 343
Eco57I	CTGAAG	2 cut(s)	443, 550
EcoRI	GAATTC	4 cut(s)	67, 84, 314, 484
EcoRII	CCWGG	1 cut(s)	15
FaeI	CATG	3 cut(s)	148, 274, 352
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	3 cut(s)	144, 270, 348
FauI	CCCGC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	6 cut(s)	112, 115, 161, 463, 562, 617
FokI	GGATG	2 cut(s)	119, 748
Fsp4HI	GCNGC	6 cut(s)	112, 115, 161, 463, 562, 617
FspBI	CTAG	2 cut(s)	507, 743
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	6 cut(s)	112, 115, 161, 463, 562, 617
GsuI	CTGGAG	1 cut(s)	365
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	1 cut(s)	730
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	148, 274, 352
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HinfI	GANTC	2 cut(s)	235, 672
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	4 cut(s)	50, 508, 565, 573
Hpy166II	GTNNAC	2 cut(s)	364, 581
Hpy188I	TCNGA	5 cut(s)	76, 195, 343, 490, 569
Hpy188III	TCNNGA	5 cut(s)	37, 104, 311, 382, 765
Hpy8I	GTNNAC	2 cut(s)	364, 581
Hpy99I	CGWCG	3 cut(s)	168, 340, 462
HpyAV	CCTTC	3 cut(s)	255, 311, 686
HpyCH4III	ACNGT	8 cut(s)	124, 140, 199, 448, 458, 520, 637, 683
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	114, 182, 407, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	128, 293
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	148, 274, 352
HspAI	GCGC	1 cut(s)	728
Kpn2I	TCCGGA	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	190, 296, 343
LmnI	GCTCC	1 cut(s)	482
Lsp1109I	GCAGC	4 cut(s)	98, 126, 449, 603
LweI	GCATC	2 cut(s)	56, 394
MaeI	CTAG	2 cut(s)	507, 743
MaeII	ACGT	1 cut(s)	338
MalI	GATC	3 cut(s)	192, 298, 345
MboI	GATC	3 cut(s)	190, 296, 343
MboII	GAAGA	3 cut(s)	25, 89, 436
MflI	RGATCY	1 cut(s)	296
MluCI	AATT	9 cut(s)	67, 84, 208, 314, 428, 484, 499, 546, 690
MlyI	GAGTC	1 cut(s)	666
MmeI	TCCRAC	2 cut(s)	547, 782
MnlI	CCTC	9 cut(s)	66, 246, 298, 318, 389, 565, 568, 664, 688
MroI	TCCGGA	1 cut(s)	103
MroXI	GAANNNNTTC	2 cut(s)	331, 428
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	3 cut(s)	190, 296, 343
NheI	GCTAGC	1 cut(s)	742
NlaIII	CATG	3 cut(s)	148, 274, 352
PdmI	GAANNNNTTC	2 cut(s)	331, 428
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	6 cut(s)	113, 116, 162, 464, 563, 618
PleI	GAGTC	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	2 cut(s)	121, 772
RsaNI	GTAC	2 cut(s)	120, 771
SatI	GCNGC	6 cut(s)	112, 115, 161, 463, 562, 617
Sau3AI	GATC	3 cut(s)	190, 296, 343
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	1 cut(s)	17
SfaNI	GCATC	2 cut(s)	56, 394
SfcI	CTRYAG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
Sse9I	AATT	9 cut(s)	67, 84, 208, 314, 428, 484, 499, 546, 690
SsiI	CCGC	3 cut(s)	149, 160, 561
SspMI	CTAG	2 cut(s)	507, 743
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	8 cut(s)	124, 140, 199, 448, 458, 520, 637, 683
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	312, 335
TasI	AATT	9 cut(s)	67, 84, 208, 314, 428, 484, 499, 546, 690
TatI	WGTACW	1 cut(s)	770
TauI	GCSGC	2 cut(s)	163, 564
TfiI	GAWTC	1 cut(s)	235
TscAI	CASTG	2 cut(s)	180, 451
TseI	GCWGC	4 cut(s)	111, 114, 462, 616
TspDTI	ATGAA	5 cut(s)	60, 227, 365, 432, 681
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	2 cut(s)	180, 451
Van91I	CCANNNNNTGG	1 cut(s)	533
XapI	RAATTY	8 cut(s)	67, 84, 208, 314, 428, 484, 499, 546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XmnI	GAANNNNTTC	2 cut(s)	331, 428
XspI	CTAG	2 cut(s)	507, 743
ZraI	GACGTC	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.