Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011597

Physical Location & Seq

Genomic Coordinates Reverse (-)

24629459 .. 24630585

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCAATTAACTTTTGTGTATAAGAACAGTGCCAACGAGCATAATTTAAATTTTTTGAAGGGGCCGGTGAGGTCACTTCTTCTTTCTCACCTGTACTCAAGTCATCTTGTATCTGAACTGAAGAGAGAGTGTTTCCTTTACAACAAAGCAAGAAGCTGGTCTTCCAGATTTCATCTAATCCTCATCATCACCAAGATCACACAATTTCAGAAATTAGGGGTTACTTTGGACTATATGATGGATCATGATCACAATTCTAATGATCATAACAAGAAGAACAAAACGTTGATGCATAGGGAAAATGAAAGGCAGAGACGGAAAGAAATGGGTACCCTACATGCTTCACTTAGATCCCTACTTCCTCCTGAATTTATCAAGGGAAAGCGTTCGATATCTGACCACACGAACGAGGCTGTGAATTATATAAACCACATCCAGAACAGAATCAGGAGGTTAGACGCCAAGAGAGCTGAACTGAAGAAGGTTTCCAATCTAAGTAGCTCTAATACTAGTTCTGACGACCATGGTGGTGAAAGTTCCTATAGGGGATCGCTGAGCTGTTTCAAAGTCGACCCATGTTGCGGTGGGGTGCAAATCATGATCAGTACTACCATCGGCTTCAGATCTGGAGAGGAAGGGTTACCCTTCTCAATTTCTAGGGTTTTGGAAGTGCTTCTTGAACAAGGGCTTTGTGTTGTGAGCTGTGTTTCCTCCAAAATAGATGACAGACTCCTTCATATCGATCCAGTCCGAGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

254

Amino Acids

28.88

Weight (kDa)

9.31

Isoelectric Point (pI)

50.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	96 - 146	5.8e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28590
malus_domestica	MD12G1112400.v1.1
prunus_persica	Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1
pyrus_communis	pycom01g20270 pycom07g23840
rosa_chinensis	RchiOBHm_Chr1g0376001
rosa_laevigata	RLG00000026636
rosa_multiflora	Rmu_ssc0000116.1_g000013
rosa_roxburghii	Rroxscaffold_4G00282430
rosa_rugosa	Rorug01G0393600 Rorug01G0393600 Rorug01G0393600
rosa_samantha	Rh1AG404900 Rh1BG368400 Rh1CG381300 Rh1DG398300
rosa_wichuraiana	Rw1G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	570
AciI	CCGC	1 cut(s)	582
AclI	AACGTT	1 cut(s)	284
AclWI	GGATC	4 cut(s)	249, 345, 556, 737
AcsI	RAATTY	2 cut(s)	49, 368
AcuI	CTGAAG	3 cut(s)	140, 497, 604
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	3 cut(s)	95, 331, 607
AfiI	CCNNNNNNNGG	2 cut(s)	581, 752
AgsI	TTSAA	3 cut(s)	58, 565, 680
AhlI	ACTAGT	1 cut(s)	509
AluBI	AGCT	5 cut(s)	156, 470, 501, 558, 702
AluI	AGCT	5 cut(s)	156, 470, 501, 558, 702
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	4 cut(s)	249, 345, 556, 737
AoxI	GGCC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	49, 368
Asp700I	GAANNNNTTC	2 cut(s)	385, 672
Asp718I	GGTACC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	4 cut(s)	79, 80, 181, 542
BanI	GGYRCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	153
BccI	CCATC	2 cut(s)	232, 620
BclI	TGATCA	3 cut(s)	247, 262, 600
BcoDI	GTCTC	1 cut(s)	307
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	2 cut(s)	510, 657
BfmI	CTRYAG	1 cut(s)	541
BglII	AGATCT	1 cut(s)	623
BlpI	GCTNAGC	1 cut(s)	554
BmcAI	AGTACT	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	63, 331
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	648
Bpu1102I	GCTNAGC	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	82
Bsa29I	ATCGAT	1 cut(s)	741
BsaBI	GATNNNNATC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	523, 751
Bsc4I	CCNNNNNNNGG	2 cut(s)	581, 752
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	746
Bse8I	GATNNNNATC	1 cut(s)	246
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	523, 751
BseGI	GGATG	1 cut(s)	432
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	581, 752
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	1 cut(s)	746
BshFI	GGCC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	741
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	581, 752
BsmAI	GTCTC	1 cut(s)	307
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	64
Bsp143I	GATC	9 cut(s)	195, 241, 247, 262, 350, 548, 600, 623, 742
Bsp1720I	GCTNAGC	1 cut(s)	554
Bsp19I	CCATGG	1 cut(s)	523
BspACI	CCGC	1 cut(s)	582
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	546
BspDI	ATCGAT	1 cut(s)	741
BspHI	TCATGA	2 cut(s)	244, 597
BspLI	GGNNCC	2 cut(s)	63, 331
BspPI	GGATC	4 cut(s)	249, 345, 556, 737
BspT107I	GGYRCC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	523, 751
BssMI	GATC	9 cut(s)	195, 241, 247, 262, 350, 548, 600, 623, 742
BssNI	GRCGYC	1 cut(s)	459
BssT1I	CCWWGG	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	116
BstACI	GRCGYC	1 cut(s)	459
BstDEI	CTNAG	3 cut(s)	347, 494, 554
BstDSI	CCRYGG	1 cut(s)	523
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	1 cut(s)	432
BstKTI	GATC	9 cut(s)	198, 244, 250, 265, 353, 551, 603, 626, 745
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	9 cut(s)	195, 241, 247, 262, 350, 548, 600, 623, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNSI	RCATGY	1 cut(s)	341
BstPI	GGTNACC	1 cut(s)	639
BstSFI	CTRYAG	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	350, 623
BstYI	RGATCY	2 cut(s)	350, 623
Bsu15I	ATCGAT	1 cut(s)	741
BsuRI	GGCC	1 cut(s)	64
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	523
BtsCI	GGATG	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	34
CciI	TCATGA	2 cut(s)	244, 597
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	62
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	94, 330, 606
CviAII	CATG	5 cut(s)	245, 338, 524, 576, 598
CviJI	RGCY	9 cut(s)	64, 156, 413, 470, 501, 558, 618, 688, 702
CviKI_1	RGCY	9 cut(s)	64, 156, 413, 470, 501, 558, 618, 688, 702
CviQI	GTAC	3 cut(s)	94, 330, 606
DdeI	CTNAG	3 cut(s)	347, 494, 554
DpnI	GATC	9 cut(s)	197, 243, 249, 264, 352, 550, 602, 625, 744
DpnII	GATC	9 cut(s)	195, 241, 247, 262, 350, 548, 600, 623, 742
DraI	TTTAAA	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	523
Eco32I	GATATC	1 cut(s)	393
Eco57I	CTGAAG	3 cut(s)	140, 497, 604
Eco91I	GGTNACC	1 cut(s)	639
EcoO65I	GGTNACC	1 cut(s)	639
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	523
EcoT22I	ATGCAT	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	523
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	5 cut(s)	248, 341, 527, 579, 601
FalI	AAGNNNNNCTT	4 cut(s)	145, 177, 660, 692
FatI	CATG	5 cut(s)	244, 337, 523, 575, 597
FbaI	TGATCA	3 cut(s)	247, 262, 600
FblI	GTMKAC	1 cut(s)	570
FokI	GGATG	1 cut(s)	419
FspBI	CTAG	2 cut(s)	510, 657
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	5 cut(s)	248, 341, 527, 579, 601
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	2 cut(s)	444, 729
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	4 cut(s)	79, 80, 181, 542
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	6 cut(s)	115, 210, 397, 517, 623, 752
Hpy188III	TCNNGA	8 cut(s)	165, 245, 365, 436, 448, 598, 627, 677
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	5 cut(s)	52, 475, 629, 655, 743
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	4, 292, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	3 cut(s)	347, 494, 554
HpySE526I	ACGT	1 cut(s)	284
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	5 cut(s)	248, 341, 527, 579, 601
KpnI	GGTACC	1 cut(s)	333
Ksp22I	TGATCA	3 cut(s)	247, 262, 600
Kzo9I	GATC	9 cut(s)	195, 241, 247, 262, 350, 548, 600, 623, 742
LpnPI	CCDG	8 cut(s)	78, 104, 142, 178, 378, 433, 449, 612
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	2 cut(s)	510, 657
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	72, 220, 639
MalI	GATC	9 cut(s)	197, 243, 249, 264, 352, 550, 602, 625, 744
MboI	GATC	9 cut(s)	195, 241, 247, 262, 350, 548, 600, 623, 742
MboII	GAAGA	5 cut(s)	71, 133, 153, 286, 490
MflI	RGATCY	2 cut(s)	350, 623
MluCI	AATT	9 cut(s)	5, 43, 49, 203, 212, 253, 368, 418, 651
MlyI	GAGTC	1 cut(s)	723
MnlI	CCTC	8 cut(s)	63, 191, 372, 403, 444, 625, 721, 746
Mph1103I	ATGCAT	1 cut(s)	294
MroXI	GAANNNNTTC	2 cut(s)	385, 672
MseI	TTAA	2 cut(s)	8, 47
MslI	CAYNNNNRTG	1 cut(s)	528
MspI	CCGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	467
NcoI	CCATGG	1 cut(s)	523
NdeII	GATC	9 cut(s)	195, 241, 247, 262, 350, 548, 600, 623, 742
NlaIII	CATG	5 cut(s)	248, 341, 527, 579, 601
NlaIV	GGNNCC	2 cut(s)	63, 331
NmuCI	GTSAC	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	1 cut(s)	341
PagI	TCATGA	2 cut(s)	244, 597
PdmI	GAANNNNTTC	2 cut(s)	385, 672
PfeI	GAWTC	1 cut(s)	444
PleI	GAGTC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	723
Psp1406I	AACGTT	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	63, 331
PspPI	GGNCC	1 cut(s)	62
PsuI	RGATCY	2 cut(s)	350, 623
RsaI	GTAC	3 cut(s)	95, 331, 607
RsaNI	GTAC	3 cut(s)	94, 330, 606
RseI	CAYNNNNRTG	1 cut(s)	528
SalI	GTCGAC	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	8, 47
Sau3AI	GATC	9 cut(s)	195, 241, 247, 262, 350, 548, 600, 623, 742
Sau96I	GGNCC	1 cut(s)	62
ScaI	AGTACT	1 cut(s)	607
SchI	GAGTC	1 cut(s)	723
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	1 cut(s)	541
SmiI	ATTTAAAT	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	9 cut(s)	5, 43, 49, 203, 212, 253, 368, 418, 651
SsiI	CCGC	1 cut(s)	582
SspMI	CTAG	2 cut(s)	510, 657
StyI	CCWWGG	1 cut(s)	523
SwaI	ATTTAAAT	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	3 cut(s)	389, 570, 741
TasI	AATT	9 cut(s)	5, 43, 49, 203, 212, 253, 368, 418, 651
TatI	WGTACW	2 cut(s)	93, 605
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	2 cut(s)	8, 47
Tru9I	TTAA	2 cut(s)	8, 47
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	72
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	3 cut(s)	161, 318, 725
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	49, 368
XceI	RCATGY	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	570
XmnI	GAANNNNTTC	2 cut(s)	385, 672
XspI	CTAG	2 cut(s)	510, 657
ZrmI	AGTACT	1 cut(s)	607
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.