Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0011597

Physical Location & Seq

Genomic Coordinates Reverse (-)

18639108 .. 18639980

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATGATCACAAGTCTAATGATCATAACAAGAAGAAGAAAATGTTTATGCACAGGGAAAGTGAAAGGCAAAGAAGGCAAGAAATGGGTATCCTACATGCTTCACTTAGATCCCTACTCCCTCTTGAATTTATCAAGGACTAGGGTTGCTGACATATATTCGTTGCGAAAGCAGGGAAAGCGTTCGATATCAGACCACATGAACGAGGCTGTGAATTATATAAAGCACCTCCAGAATAGGATCAAGAGATTAGACGCCAAGAGAGCTGAACTGAAGAAGGTCTCCGATCGAATTAACTCTAGTACTAGCACGGACGACCATGGTGGTGAAAGTTCCCATGGGGGATCACCAAGCTGTTTCACAGTCCACCCATGTTGCGGTGGAGTGCAAATCGTGATCAGTACTGCCATCGGCTTCAGATCTGGAGAGGAAGGGTTACGCTTCTCAATTTCTAGGGTTTTAGAAGTGCTTCTTGAACAAGGGCTTTGTGTTGTGAGCTGTGTCTCCTCCAAAATAGATGACAGACTCCTTCATACTATCCAGTCCGAGGCGAATGATCCAGAGAGTATCGATCTTTCTGCGCTGGAACATAAACTACATGAAGTGCTTCCACGATGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

208

Amino Acids

23.15

Weight (kDa)

9.23

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28590
malus_domestica	MD12G1112400.v1.1
prunus_persica	Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1
pyrus_communis	pycom01g20270 pycom07g23840
rosa_chinensis	RchiOBHm_Chr1g0376001
rosa_laevigata	RLG00000026636
rosa_multiflora	Rmu_ssc0000116.1_g000013
rosa_roxburghii	Rroxscaffold_4G00282430
rosa_rugosa	Rorug01G0393600 Rorug01G0393600 Rorug01G0393600
rosa_samantha	Rh1AG404900 Rh1BG368400 Rh1CG381300 Rh1DG398300
rosa_wichuraiana	Rw1G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	4 cut(s)	104, 248, 352, 551
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	2 cut(s)	293, 400
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	304, 403
AfiI	CCNNNNNNNGG	2 cut(s)	377, 547
AgsI	TTSAA	2 cut(s)	127, 476
AluBI	AGCT	3 cut(s)	266, 354, 498
AluI	AGCT	3 cut(s)	266, 354, 498
Alw26I	GTCTC	2 cut(s)	286, 508
AlwI	GGATC	4 cut(s)	104, 248, 352, 551
ApoI	RAATTY	1 cut(s)	127
Asp700I	GAANNNNTTC	3 cut(s)	181, 468, 606
AspLEI	GCGC	1 cut(s)	583
AsuHPI	GGTGA	2 cut(s)	338, 339
BccI	CCATC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BciVI	GTATCC	1 cut(s)	100
BclI	TGATCA	3 cut(s)	6, 21, 396
BcoDI	GTCTC	2 cut(s)	286, 508
BfaI	CTAG	4 cut(s)	141, 300, 306, 453
BfuI	GTATCC	1 cut(s)	100
BglII	AGATCT	1 cut(s)	419
BmcAI	AGTACT	2 cut(s)	304, 403
BpmI	CTGGAG	2 cut(s)	215, 444
Bsa29I	ATCGAT	1 cut(s)	570
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	286
BsaJI	CCNNGG	3 cut(s)	319, 337, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	377, 547
Bse1I	ACTGG	1 cut(s)	541
BseCI	ATCGAT	1 cut(s)	570
BseDI	CCNNGG	3 cut(s)	319, 337, 546
BseLI	CCNNNNNNNGG	2 cut(s)	377, 547
BseNI	ACTGG	1 cut(s)	541
BseRI	GAGGAG	1 cut(s)	496
Bsh1285I	CGRYCG	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	570
BsiEI	CGRYCG	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	377, 547
BsmAI	GTCTC	2 cut(s)	286, 508
Bso31I	GGTCTC	1 cut(s)	286
Bsp19I	CCATGG	2 cut(s)	319, 337
BspACI	CCGC	1 cut(s)	378
BspDI	ATCGAT	1 cut(s)	570
BspPI	GGATC	4 cut(s)	104, 248, 352, 551
BspTNI	GGTCTC	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	3 cut(s)	319, 337, 546
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	2 cut(s)	319, 337
Bst4CI	ACNGT	1 cut(s)	364
BstACI	GRCGYC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	2 cut(s)	319, 337
BstHHI	GCGC	1 cut(s)	583
BstMAI	GTCTC	2 cut(s)	286, 508
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 178, 263
BstNSI	RCATGY	1 cut(s)	100
BstX2I	RGATCY	2 cut(s)	109, 419
BstYI	RGATCY	2 cut(s)	109, 419
Bsu15I	ATCGAT	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	570
BtgI	CCRYGG	2 cut(s)	319, 337
CfoI	GCGC	1 cut(s)	583
ClaI	ATCGAT	1 cut(s)	570
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	303, 402
CspCI	CAANNNNNGTGG	2 cut(s)	356, 391
CviAII	CATG	6 cut(s)	97, 199, 320, 338, 372, 599
CviJI	RGCY	6 cut(s)	209, 266, 354, 414, 484, 498
CviKI_1	RGCY	6 cut(s)	209, 266, 354, 414, 484, 498
CviQI	GTAC	2 cut(s)	303, 402
DdeI	CTNAG	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	319, 337
Eco31I	GGTCTC	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	293, 400
EcoRV	GATATC	1 cut(s)	189
EcoT14I	CCWWGG	2 cut(s)	319, 337
ErhI	CCWWGG	2 cut(s)	319, 337
FaeI	CATG	6 cut(s)	100, 202, 323, 341, 375, 602
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FatI	CATG	6 cut(s)	96, 198, 319, 337, 371, 598
FbaI	TGATCA	3 cut(s)	6, 21, 396
FspBI	CTAG	4 cut(s)	141, 300, 306, 453
GlaI	GCGC	1 cut(s)	582
GsuI	CTGGAG	2 cut(s)	215, 444
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	6 cut(s)	100, 202, 323, 341, 375, 602
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	1 cut(s)	525
HphI	GGTGA	2 cut(s)	338, 339
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	4 cut(s)	193, 286, 419, 547
Hpy188III	TCNNGA	7 cut(s)	124, 232, 244, 394, 423, 473, 560
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	4 cut(s)	68, 271, 425, 539
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	51, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 178, 263
HpyF3I	CTNAG	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	6 cut(s)	100, 202, 323, 341, 375, 602
HspAI	GCGC	1 cut(s)	581
Ksp22I	TGATCA	3 cut(s)	6, 21, 396
LpnPI	CCDG	7 cut(s)	39, 158, 245, 408, 554, 569, 573
MaeI	CTAG	4 cut(s)	141, 300, 306, 453
MaeIII	GTNAC	1 cut(s)	435
MboII	GAAGA	3 cut(s)	45, 48, 286
MflI	RGATCY	2 cut(s)	109, 419
MluCI	AATT	4 cut(s)	127, 214, 291, 447
MlyI	GAGTC	1 cut(s)	519
MnlI	CCTC	6 cut(s)	131, 199, 239, 421, 517, 541
MroXI	GAANNNNTTC	3 cut(s)	181, 468, 606
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	75, 178, 263
NcoI	CCATGG	2 cut(s)	319, 337
NlaIII	CATG	6 cut(s)	100, 202, 323, 341, 375, 602
NspI	RCATGY	1 cut(s)	100
PdmI	GAANNNNTTC	3 cut(s)	181, 468, 606
Ple19I	CGATCG	1 cut(s)	289
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PsrI	GAACNNNNNNTAC	2 cut(s)	579, 611
PsuI	RGATCY	2 cut(s)	109, 419
PvuI	CGATCG	1 cut(s)	289
RsaI	GTAC	2 cut(s)	304, 403
RsaNI	GTAC	2 cut(s)	303, 402
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	294
ScaI	AGTACT	2 cut(s)	304, 403
SchI	GAGTC	1 cut(s)	519
SetI	ASST	5 cut(s)	231, 268, 282, 356, 500
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	4 cut(s)	127, 214, 291, 447
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	4 cut(s)	141, 300, 306, 453
StyI	CCWWGG	2 cut(s)	319, 337
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	185, 289, 570
TasI	AATT	4 cut(s)	127, 214, 291, 447
TatI	WGTACW	2 cut(s)	302, 401
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	215, 521, 615
TspGWI	ACGGA	1 cut(s)	326
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	100
XmnI	GAANNNNTTC	3 cut(s)	181, 468, 606
XspI	CTAG	4 cut(s)	141, 300, 306, 453
ZrmI	AGTACT	2 cut(s)	304, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.