Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011597

Physical Location & Seq

Genomic Coordinates Reverse (-)

63228634 .. 63235526

Gene Structure 6893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG404900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGATAAAGGAGAGGATGAGTTTTGAGCACACAACAACTCTCTTCGTGTTCATGACAGAAAAAAGAGAGAGAATCTCTGAGGGCAAGAAGGGAGGAAAGAACAAAGCAGCAACTTATAAGTGGTCAATCTTAAAGTGGCTCAAAAGTTGCAGCCCTGTTTCTACTATTATTCCTTTGTGGTTTATTCTATTTCTATATTGGAGCTGGCAATCTAATGGTTTTCTCCTACAGAATAATCTTTTTTGGATATTAAAATCCACCCCAAGTTTCTTCCAAAATTTCAAAGGAATACTGTGCTTTTCAATACCTCTTCTATTGGGGATGAGAAAACTGATCAAGATGAAATTGGCCAAAAGGTCGGTTTTCAATGAAATAAAGGAGAATCACAGAAAATTAATAATCTCTAAACCATTTAATTTTCAATTGCAGATCCGGGACCATCTTCCAAGAGCTGCGATTGTTGGAAGACCAAACGTTGTCTTTGAGTCATCACTTGTTACCGTACATGCCACAAGTAACTACTTCGTGACTGCATCTCTTGATAGTACATGGTGCTTTTACGATTTCTCTTCTGGGTTATGTTTGACACAGTTGGCAGGTTTCCAGATGCCAATGGAGCTTTTCTTTATCCTATGTATGGTCATGGGGAGTTCGCAAGCCTTTTGTAGCCGTGCTGCTATTAAAGGTTGTCTTCAAGGAAATAAGCTGGTCTTCCAGATTTCATCATCTAATCCTCACCACCAGAATTCATCAGAAGATAGGATTCTCGGATATGCTTCTCCGGATGGATGCAGCAGTACTGTCCTTAGCAACAACAATAACATGGGGAAAAGCCGGCGGAGGAAATTAGTGGTTGCAGCTTTGGATCAGACAATTATTGAAAATTCAAAGGATAACAAGAAGAAGAAAATGATGATTCATAGGGAGAATGAAAGGCAAAGAAGGAAAGAAATGGCTACCTTATACTCCTGTCTTAGATCCCTACTCCCCCTTGAATTCATCAAGGGAAAGCGTTCGACGTCTGATCACATGAACGAAGCTGTGAACTACATAAAACACCTCCAGAGTAGGATCAAAACATTAGACGCAAAGAGAGATGAATTTAAGAAATTCCCTAAAATAAGCACTGATATTGACCGTCGCTGGACTACTGGAAGCTCTTTGAATTCAGATAAGGTGAATTTGCGTAGCTGTTTTACAGTCCAGCCAAGTTCTGGTGGAGTGCAAATTTTGGTGAGTGGTGGCTTCAGAGAAGATGGGTTACCACTCATTTCAATCTCAAGCGTTTTGGAAATTCTGCTTGGACGAGGGCTTACTGTTGTTAGTTGTGTCTCCTCCCAAGTAAATGAAAGACTCCTTCACACTATCCAGATTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

459

Amino Acids

52.36

Weight (kDa)

9.88

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	307 - 355	2.3e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28590
malus_domestica	MD12G1112400.v1.1
prunus_persica	Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1
pyrus_communis	pycom01g20270 pycom07g23840
rosa_chinensis	RchiOBHm_Chr1g0376001
rosa_laevigata	RLG00000026636
rosa_multiflora	Rmu_ssc0000116.1_g000013
rosa_roxburghii	Rroxscaffold_4G00282430
rosa_rugosa	Rorug01G0393600 Rorug01G0393600 Rorug01G0393600
rosa_samantha	Rh1AG404900 Rh1BG368400 Rh1CG381300 Rh1DG398300
rosa_wichuraiana	Rw1G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AatII	GACGTC	1 cut(s)	1022
Acc36I	ACCTGC	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	1214
AccIII	TCCGGA	1 cut(s)	781
AciI	CCGC	1 cut(s)	838
AclI	AACGTT	1 cut(s)	474
AclWI	GGATC	4 cut(s)	424, 873, 972, 1079
AcoI	YGGCCR	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	1231
AcyI	GRCGYC	1 cut(s)	1019
AfaI	GTAC	3 cut(s)	504, 547, 799
AfiI	CCNNNNNNNGG	2 cut(s)	637, 1214
AjuI	GAANNNNNNNTTGG	2 cut(s)	1284, 1316
AluBI	AGCT	8 cut(s)	204, 452, 619, 706, 860, 1040, 1158, 1191
AluI	AGCT	8 cut(s)	204, 452, 619, 706, 860, 1040, 1158, 1191
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	1336
AlwI	GGATC	4 cut(s)	424, 873, 972, 1079
Aor13HI	TCCGGA	1 cut(s)	781
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	6 cut(s)	107, 150, 452, 674, 792, 857
AseI	ATTAAT	1 cut(s)	395
Asp700I	GAANNNNTTC	1 cut(s)	1012
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	728, 1189, 1246
AvaII	GGWCC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	350
BarI	GAAGNNNNNNTAC	2 cut(s)	1245, 1277
BbsI	GAAGAC	3 cut(s)	472, 683, 703
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	6 cut(s)	119, 162, 439, 661, 804, 869
BccI	CCATC	3 cut(s)	447, 779, 1250
BceAI	ACGGC	1 cut(s)	654
BclI	TGATCA	2 cut(s)	333, 1024
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	1336
BfmI	CTRYAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	587
BisI	GCNGC	6 cut(s)	108, 151, 453, 675, 793, 858
BlsI	GCNGC	6 cut(s)	109, 152, 454, 676, 794, 859
BmcAI	AGTACT	1 cut(s)	799
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	3 cut(s)	542, 597, 779
BpiI	GAAGAC	3 cut(s)	472, 683, 703
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpmI	CTGGAG	1 cut(s)	1046
Bpu10I	CCTNAGC	1 cut(s)	806
BpuEI	CTTGAG	1 cut(s)	1264
BpuMI	CCSGG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	1019
BsaWI	WCCGGW	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	2 cut(s)	637, 1214
Bse118I	RCCGGY	1 cut(s)	834
Bse1I	ACTGG	1 cut(s)	1156
BseAI	TCCGGA	1 cut(s)	781
BseGI	GGATG	4 cut(s)	21, 327, 790, 794
BseLI	CCNNNNNNNGG	2 cut(s)	637, 1214
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	1156
BseRI	GAGGAG	1 cut(s)	1324
BseXI	GCAGC	6 cut(s)	119, 162, 439, 661, 804, 869
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	3 cut(s)	433, 782, 835
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	637, 1214
BsmAI	GTCTC	1 cut(s)	1336
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp13I	TCCGGA	1 cut(s)	781
Bsp143I	GATC	6 cut(s)	333, 429, 865, 977, 1024, 1071
BspACI	CCGC	1 cut(s)	838
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	781
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	437
BspMI	ACCTGC	1 cut(s)	587
BspPI	GGATC	4 cut(s)	424, 873, 972, 1079
BsrFI	RCCGGY	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	1156
BssAI	RCCGGY	1 cut(s)	834
BssMI	GATC	6 cut(s)	333, 429, 865, 977, 1024, 1071
BssNI	GRCGYC	1 cut(s)	1019
Bst4CI	ACNGT	7 cut(s)	294, 502, 591, 802, 1139, 1201, 1318
Bst6I	CTCTTC	3 cut(s)	47, 315, 574
BstACI	GRCGYC	1 cut(s)	1019
BstC8I	GCNNGC	3 cut(s)	206, 657, 836
BstDEI	CTNAG	3 cut(s)	78, 806, 974
BstEII	GGTNACC	1 cut(s)	1260
BstF5I	GGATG	4 cut(s)	21, 327, 790, 794
BstKTI	GATC	6 cut(s)	336, 432, 868, 980, 1027, 1074
BstMAI	GTCTC	1 cut(s)	1336
BstMBI	GATC	6 cut(s)	333, 429, 865, 977, 1024, 1071
BstMWI	GCNNNNNNNGC	1 cut(s)	616
BstNSI	RCATGY	1 cut(s)	509
BstPI	GGTNACC	1 cut(s)	1260
BstSCI	CCNGG	1 cut(s)	432
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	6 cut(s)	119, 162, 439, 661, 804, 869
BstV2I	GAAGAC	3 cut(s)	472, 683, 703
BstX2I	RGATCY	2 cut(s)	429, 977
BstYI	RGATCY	2 cut(s)	429, 977
BsuRI	GGCC	1 cut(s)	350
BtsCI	GGATG	4 cut(s)	21, 327, 790, 794
BtsIMutI	CAGTG	1 cut(s)	1125
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	3 cut(s)	206, 657, 836
CciI	TCATGA	1 cut(s)	51
Cfr10I	RCCGGY	1 cut(s)	834
Cfr13I	GGNCC	1 cut(s)	436
CseI	GACGC	1 cut(s)	1094
Csp6I	GTAC	3 cut(s)	503, 546, 798
CviAII	CATG	6 cut(s)	52, 506, 549, 643, 823, 1030
CviQI	GTAC	3 cut(s)	503, 546, 798
DdeI	CTNAG	3 cut(s)	78, 806, 974
DpnI	GATC	6 cut(s)	335, 431, 867, 979, 1026, 1073
DpnII	GATC	6 cut(s)	333, 429, 865, 977, 1024, 1071
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	3 cut(s)	47, 315, 574
EarI	CTCTTC	3 cut(s)	47, 315, 574
EciI	GGCGGA	1 cut(s)	853
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	1231
Eco91I	GGTNACC	1 cut(s)	1260
EcoO65I	GGTNACC	1 cut(s)	1260
EcoRI	GAATTC	3 cut(s)	745, 995, 1165
FaeI	CATG	6 cut(s)	55, 509, 552, 646, 826, 1033
FalI	AAGNNNNNCTT	4 cut(s)	675, 707, 695, 727
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	6 cut(s)	51, 505, 548, 642, 822, 1029
FbaI	TGATCA	2 cut(s)	333, 1024
Fnu4HI	GCNGC	6 cut(s)	108, 151, 453, 675, 793, 858
FokI	GGATG	4 cut(s)	28, 334, 797, 801
Fsp4HI	GCNGC	6 cut(s)	108, 151, 453, 675, 793, 858
GluI	GCNGC	6 cut(s)	108, 151, 453, 675, 793, 858
GsuI	CTGGAG	1 cut(s)	1046
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	3 cut(s)	433, 782, 835
HgaI	GACGC	1 cut(s)	1094
Hin1I	GRCGYC	1 cut(s)	1019
Hin1II	CATG	6 cut(s)	55, 509, 552, 646, 826, 1033
HinfI	GANTC	6 cut(s)	72, 382, 485, 763, 916, 1353
HpaII	CCGG	3 cut(s)	433, 782, 835
HphI	GGTGA	3 cut(s)	728, 1189, 1246
Hpy166II	GTNNAC	1 cut(s)	1045
Hpy188I	TCNGA	7 cut(s)	79, 754, 770, 870, 1024, 1171, 1250
Hpy188III	TCNNGA	9 cut(s)	52, 337, 526, 539, 604, 715, 782, 1063, 1369
Hpy8I	GTNNAC	1 cut(s)	1045
Hpy99I	CGWCG	2 cut(s)	1021, 1143
HpyAV	CCTTC	3 cut(s)	82, 936, 1367
HpyCH4III	ACNGT	7 cut(s)	294, 502, 591, 802, 1139, 1201, 1318
HpyCH4IV	ACGT	2 cut(s)	474, 1019
HpyCH4V	TGCA	6 cut(s)	150, 427, 533, 792, 857, 1225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	616
HpyF3I	CTNAG	3 cut(s)	78, 806, 974
HpySE526I	ACGT	2 cut(s)	474, 1019
Hsp92I	GRCGYC	1 cut(s)	1019
Hsp92II	CATG	6 cut(s)	55, 509, 552, 646, 826, 1033
Kpn2I	TCCGGA	1 cut(s)	781
KroI	GCCGGC	1 cut(s)	834
KroNI	GCCGGC	1 cut(s)	836
Ksp22I	TGATCA	2 cut(s)	333, 1024
Kzo9I	GATC	6 cut(s)	333, 429, 865, 977, 1024, 1071
LmnI	GCTCC	2 cut(s)	201, 616
Lsp1109I	GCAGC	6 cut(s)	119, 162, 439, 661, 804, 869
LweI	GCATC	3 cut(s)	542, 597, 779
MaeII	ACGT	2 cut(s)	474, 1019
MaeIII	GTNAC	4 cut(s)	496, 515, 526, 1260
MalI	GATC	6 cut(s)	335, 431, 867, 979, 1026, 1073
MboI	GATC	6 cut(s)	333, 429, 865, 977, 1024, 1071
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	2 cut(s)	429, 977
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	350
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	494, 1347
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	9 cut(s)	6, 73, 86, 318, 744, 834, 1070, 1301, 1345
Mox20I	TGGCCA	1 cut(s)	350
MroI	TCCGGA	1 cut(s)	781
MroNI	GCCGGC	1 cut(s)	834
MroXI	GAANNNNTTC	1 cut(s)	1012
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	6 cut(s)	131, 251, 395, 414, 681, 1104
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	3 cut(s)	433, 782, 835
MspR9I	CCNGG	1 cut(s)	434
MunI	CAATTG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	616
NaeI	GCCGGC	1 cut(s)	836
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	6 cut(s)	333, 429, 865, 977, 1024, 1071
NgoMIV	GCCGGC	1 cut(s)	834
NlaIII	CATG	6 cut(s)	55, 509, 552, 646, 826, 1033
NlaIV	GGNNCC	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	509
PagI	TCATGA	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	836
PdmI	GAANNNNTTC	1 cut(s)	1012
PfeI	GAWTC	4 cut(s)	72, 382, 763, 916
PflMI	CCANNNNNTGG	1 cut(s)	1214
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	6 cut(s)	109, 152, 454, 676, 794, 859
PleI	GAGTC	2 cut(s)	493, 1347
PpsI	GAGTC	2 cut(s)	493, 1347
PshBI	ATTAAT	1 cut(s)	395
PsiI	TTATAA	1 cut(s)	117
Psp1406I	AACGTT	1 cut(s)	474
PspEI	GGTNACC	1 cut(s)	1260
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	429, 977
RsaI	GTAC	3 cut(s)	504, 547, 799
RsaNI	GTAC	3 cut(s)	503, 546, 798
SaqAI	TTAA	6 cut(s)	131, 251, 395, 414, 681, 1104
SatI	GCNGC	6 cut(s)	108, 151, 453, 675, 793, 858
Sau3AI	GATC	6 cut(s)	333, 429, 865, 977, 1024, 1071
Sau96I	GGNCC	1 cut(s)	436
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	2 cut(s)	494, 1347
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	3 cut(s)	542, 597, 779
SfcI	CTRYAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	1279
SmoI	CTYRAG	1 cut(s)	1279
SsiI	CCGC	1 cut(s)	838
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	7 cut(s)	294, 502, 591, 802, 1139, 1201, 1318
TaiI	ACGT	2 cut(s)	477, 1022
TaqI	TCGA	1 cut(s)	1016
TatI	WGTACW	2 cut(s)	545, 797
TfiI	GAWTC	4 cut(s)	72, 382, 763, 916
Tru1I	TTAA	6 cut(s)	131, 251, 395, 414, 681, 1104
Tru9I	TTAA	6 cut(s)	131, 251, 395, 414, 681, 1104
TscAI	CASTG	1 cut(s)	1132
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	6 cut(s)	107, 150, 452, 674, 792, 857
Tsp45I	GTSAC	1 cut(s)	526
TspRI	CASTG	1 cut(s)	1132
Van91I	CCANNNNNTGG	1 cut(s)	1214
VpaK11BI	GGWCC	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	395
XceI	RCATGY	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1211
XmnI	GAANNNNTTC	1 cut(s)	1012
ZraI	GACGTC	1 cut(s)	1020
ZrmI	AGTACT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.