RchiOBHm_Chr1g0376001

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011597
Physical Location & Seq
Reverse (-)
63268663 .. 63269742
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59968

Sequence Viewer

Length: 918 bp
ATGTTTCCTTTACACCAGGGAAATAAGCTGGTCTTCCAGATTTCATCATCTAATCCTCACCACCAGAATTCATCAGAAGATAGGATTCTCGGATATGCTTCGCCGGATGGATGCAGCAGTACTGTTCTCAGCAACAACAATAACATGGGGAAAAGCCGGCGGAGGAAATTAGTGGTTGCAGCTTTGGATCAGACAATTATTGAAAATTCAAAGGATAACAAGAAGAAGAAAATGATGATTCATAGGGAGAATGAAAGGCAAAGAAGGCAAGAAATGGCTACCTTATACTCCCGTCTTAGATCCCTACTCCCCCTTGAATTCATCAAGGGAAAGCGTTCGACGTCTGATCACATGAACGAAGCTGTGAACTACATAAAACACCTCCAGAATAGAATCAAAACATTAGACGCAAAGAGAGATGAATTTAAGAAATTCCCTAAAATAAGCACTGATGTTGACCGTCGCTGCACTACTGGAAGCTCTTTGAATTCAGATAAGGTGAATTTGCCTAGCTGTTTTACAGTCCAGCCAAGTTCTGGTGGAGTGCAAATTTTGGTGAGTGGTGGCTTCAGAGAGGATGGGTTACCACTCATTTCAATCTCAAGCGTTTTGGAAATTCTGCTTGGACGAGGGCTTACTGTTGTTAGTTGTGTCTCCTCCCAAGTAAATGAAAGACTCCTTCACACTATCCAGATTGAGGTATATCAATTTTGGTTTAGGGTTTTGAATTGCTATATATTTTGGTTACAGTTTTGTGTCAGTTTTAAGTTGCTATTTGCGGTTCAGTACGTGTTAAACTATATAGGATTCTTACTCCATATATATCAGGTCGATGATGTGGAAAGTCTGGATCTTTCTGCGCTGGAACAGAAGCTAGCTAAAGCGCTTCCAACATCCAGAAGTACTATCTCCAAGTAA

Protein Analysis

305

Amino Acids

34.75

Weight (kDa)

9.53

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 81 - 129 1.1e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 536
AciI CCGC 2 cut(s) 160, 779
AclWI GGATC 3 cut(s) 195, 294, 858
AcsI RAATTY 9 cut(s) 67, 205, 317, 422, 431, 487, 502, 549, 615
AcuI CTGAAG 1 cut(s) 553
AcyI GRCGYC 1 cut(s) 341
AfaI GTAC 3 cut(s) 121, 788, 904
AfeI AGCGCT 1 cut(s) 885
AfiI CCNNNNNNNGG 2 cut(s) 536, 697
AflIII ACRYGT 1 cut(s) 789
AgsI TTSAA 6 cut(s) 203, 210, 317, 487, 597, 727
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AluBI AGCT 7 cut(s) 28, 182, 362, 480, 513, 874, 878
AluI AGCT 7 cut(s) 28, 182, 362, 480, 513, 874, 878
Alw26I GTCTC 1 cut(s) 658
AlwI GGATC 3 cut(s) 195, 294, 858
Aor51HI AGCGCT 1 cut(s) 885
ApeKI GCWGC 3 cut(s) 114, 179, 465
ApoI RAATTY 9 cut(s) 67, 205, 317, 422, 431, 487, 502, 549, 615
Asp700I GAANNNNTTC 1 cut(s) 334
AspLEI GCGC 2 cut(s) 862, 886
AsuHPI GGTGA 3 cut(s) 50, 511, 568
AsuNHI GCTAGC 1 cut(s) 874
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 3 cut(s) 126, 191, 452
BccI CCATC 2 cut(s) 101, 572
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 2 cut(s) 510, 875
BfoI RGCGCY 1 cut(s) 887
BisI GCNGC 3 cut(s) 115, 180, 466
BlsI GCNGC 3 cut(s) 116, 181, 467
BmcAI AGTACT 2 cut(s) 121, 904
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 101
BmtI GCTAGC 1 cut(s) 878
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 586
BsaAI YACGTR 1 cut(s) 790
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 536, 697
Bse118I RCCGGY 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 478
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 4 cut(s) 112, 116, 583, 893
BseLI CCNNNNNNNGG 2 cut(s) 536, 697
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 1 cut(s) 646
BseXI GCAGC 3 cut(s) 126, 191, 452
BsgI GTGCAG 1 cut(s) 451
BsiSI CCGG 2 cut(s) 104, 157
BslI CCNNNNNNNGG 2 cut(s) 536, 697
BsmAI GTCTC 1 cut(s) 658
Bsp143I GATC 4 cut(s) 187, 299, 346, 850
BspACI CCGC 2 cut(s) 160, 779
BspCNI CTCAG 1 cut(s) 141
BspOI GCTAGC 1 cut(s) 878
BspPI GGATC 3 cut(s) 195, 294, 858
BsrFI RCCGGY 1 cut(s) 156
BsrI ACTGG 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 4 cut(s) 187, 299, 346, 850
BssNI GRCGYC 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 5 cut(s) 124, 461, 523, 640, 750
BstACI GRCGYC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 790
BstC8I GCNNGC 2 cut(s) 158, 876
BstDEI CTNAG 2 cut(s) 128, 296
BstEII GGTNACC 1 cut(s) 582
BstF5I GGATG 4 cut(s) 112, 116, 583, 893
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 2 cut(s) 862, 886
BstKTI GATC 4 cut(s) 190, 302, 349, 853
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 4 cut(s) 187, 299, 346, 850
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 17
BstPI GGTNACC 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 126, 191, 452
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 299, 850
BstYI RGATCY 2 cut(s) 299, 850
BtsCI GGATG 4 cut(s) 112, 116, 583, 893
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 2 cut(s) 158, 876
CfoI GCGC 2 cut(s) 862, 886
Cfr10I RCCGGY 1 cut(s) 156
CseI GACGC 1 cut(s) 416
Csp6I GTAC 3 cut(s) 120, 787, 903
CviAII CATG 2 cut(s) 145, 352
CviQI GTAC 3 cut(s) 120, 787, 903
DdeI CTNAG 2 cut(s) 128, 296
DpnI GATC 4 cut(s) 189, 301, 348, 852
DpnII GATC 4 cut(s) 187, 299, 346, 850
EciI GGCGGA 1 cut(s) 175
Eco47III AGCGCT 1 cut(s) 885
Eco57I CTGAAG 1 cut(s) 553
Eco91I GGTNACC 1 cut(s) 582
EcoO65I GGTNACC 1 cut(s) 582
EcoRI GAATTC 3 cut(s) 67, 317, 487
EcoRII CCWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 148, 355
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FatI CATG 2 cut(s) 144, 351
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 3 cut(s) 115, 180, 466
FokI GGATG 4 cut(s) 119, 123, 590, 880
Fsp4HI GCNGC 3 cut(s) 115, 180, 466
FspBI CTAG 2 cut(s) 510, 875
GlaI GCGC 2 cut(s) 861, 885
GluI GCNGC 3 cut(s) 115, 180, 466
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 887
HapII CCGG 2 cut(s) 104, 157
HgaI GACGC 1 cut(s) 416
HhaI GCGC 2 cut(s) 862, 886
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 2 cut(s) 148, 355
Hin6I GCGC 2 cut(s) 860, 884
HinP1I GCGC 2 cut(s) 860, 884
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 5 cut(s) 85, 238, 393, 675, 807
HpaII CCGG 2 cut(s) 104, 157
HphI GGTGA 3 cut(s) 50, 511, 568
Hpy166II GTNNAC 2 cut(s) 367, 457
Hpy188I TCNGA 6 cut(s) 76, 92, 192, 346, 493, 572
Hpy188III TCNNGA 5 cut(s) 37, 385, 691, 848, 897
Hpy8I GTNNAC 2 cut(s) 367, 457
Hpy99I CGWCG 2 cut(s) 343, 465
HpyAV CCTTC 2 cut(s) 258, 689
HpyCH4III ACNGT 5 cut(s) 124, 461, 523, 640, 750
HpyCH4IV ACGT 2 cut(s) 341, 789
HpyCH4V TGCA 4 cut(s) 114, 179, 468, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 2 cut(s) 128, 296
HpySE526I ACGT 2 cut(s) 341, 789
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 2 cut(s) 148, 355
HspAI GCGC 2 cut(s) 860, 884
KroI GCCGGC 1 cut(s) 156
KroNI GCCGGC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 4 cut(s) 187, 299, 346, 850
Lsp1109I GCAGC 3 cut(s) 126, 191, 452
LweI GCATC 1 cut(s) 101
MaeI CTAG 2 cut(s) 510, 875
MaeII ACGT 2 cut(s) 341, 789
MaeIII GTNAC 2 cut(s) 582, 744
MalI GATC 4 cut(s) 189, 301, 348, 852
MboI GATC 4 cut(s) 187, 299, 346, 850
MboII GAAGA 4 cut(s) 25, 89, 235, 238
MflI RGATCY 2 cut(s) 299, 850
MlyI GAGTC 1 cut(s) 669
MmeI TCCRAC 1 cut(s) 914
MnlI CCTC 7 cut(s) 66, 156, 392, 568, 623, 667, 691
MroNI GCCGGC 1 cut(s) 156
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 3 cut(s) 426, 765, 794
MspI CCGG 2 cut(s) 104, 157
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 265
NaeI GCCGGC 1 cut(s) 158
NdeII GATC 4 cut(s) 187, 299, 346, 850
NgoMIV GCCGGC 1 cut(s) 156
NheI GCTAGC 1 cut(s) 874
NlaIII CATG 2 cut(s) 148, 355
PdiI GCCGGC 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 4 cut(s) 85, 238, 393, 807
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 3 cut(s) 116, 181, 467
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
Ppu21I YACGTR 1 cut(s) 790
Psp6I CCWGG 1 cut(s) 15
PspEI GGTNACC 1 cut(s) 582
PspGI CCWGG 1 cut(s) 15
PsuI RGATCY 2 cut(s) 299, 850
RsaI GTAC 3 cut(s) 121, 788, 904
RsaNI GTAC 3 cut(s) 120, 787, 903
SaqAI TTAA 3 cut(s) 426, 765, 794
SatI GCNGC 3 cut(s) 115, 180, 466
Sau3AI GATC 4 cut(s) 187, 299, 346, 850
ScaI AGTACT 2 cut(s) 121, 904
SchI GAGTC 1 cut(s) 669
ScrFI CCNGG 1 cut(s) 17
SfaNI GCATC 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
SsiI CCGC 2 cut(s) 160, 779
SspMI CTAG 2 cut(s) 510, 875
StyD4I CCNGG 1 cut(s) 15
TaaI ACNGT 5 cut(s) 124, 461, 523, 640, 750
TaiI ACGT 2 cut(s) 344, 792
TaqI TCGA 2 cut(s) 338, 831
TatI WGTACW 2 cut(s) 119, 902
TfiI GAWTC 4 cut(s) 85, 238, 393, 807
Tru1I TTAA 3 cut(s) 426, 765, 794
Tru9I TTAA 3 cut(s) 426, 765, 794
TscAI CASTG 1 cut(s) 454
TseI GCWGC 3 cut(s) 114, 179, 465
TspDTI ATGAA 8 cut(s) 33, 60, 230, 267, 310, 368, 435, 684
TspRI CASTG 1 cut(s) 454
Van91I CCANNNNNTGG 1 cut(s) 536
XapI RAATTY 9 cut(s) 67, 205, 317, 422, 431, 487, 502, 549, 615
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 2 cut(s) 510, 875
ZraI GACGTC 1 cut(s) 342
ZrmI AGTACT 2 cut(s) 121, 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.