Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011597

Physical Location & Seq

Genomic Coordinates Reverse (-)

28241721 .. 28243700

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G285900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGATGTTTCCTTTACACCAAGGCAAGAAGCTGGTCTTCCAGACTTCATCTAATCCTCCCCAAAAGCACACAATTTCAGAAGATCGGATTCTTGGACATGCCATCAGCACAGGGAAAAGCCGCCGGCGGAAATTAGTAGCTGCTTTCAACTATGACATGATTGATCAGAATTCGAATGATCATAACAAGAAGAAGAAGATGATGATGCATAGGGAAAACGAAAGACAAAGAAGGCAAGAAATGGGTACCCTACATGCCTCACTCAGATCCCTACTTCCTCTTGAATTTATCAAGCAGGGAAAGCGTTCGATATCTGACCACATGAACGAGGCTGTGAACTATATAAAACACCTTCAGAGTAGGATCAAGAGATTAGATGCCAAGAGAGCTGAATTGAAGAAATGTTCCAATATAATTAGCACCACTGGCACTGACCATGGGGCTACTCCTGGAAGCTCCGATGGGCGTTCGCCAAGCTGTTTGACGGTCCACCCATGTTGTGGTGGAGTGCAAATCGTGATCAGTTCTAGGGGCTTCAGATCTTCAAAAGATGGCTTATCCTTGTCCTTCTCTATCTCAAGGGTTCTGGAAGTGCTGCTTGAACAAGGGCTTGCTGTTGTTAGCTGTGTTTCCTCCAAAGGAAATGACAGACTTCTTCATACTATCCAGTGCGAGGTAAATGATCTTGAAAGTATTGATCTTTCTGGCCTGGAGCAGAAACTAGCCGAACTAGTGTCTCCATTTTCATCCAGATGTATATCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

256

Amino Acids

28.45

Weight (kDa)

9.55

Isoelectric Point (pI)

58.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28590
malus_domestica	MD12G1112400.v1.1
prunus_persica	Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1
pyrus_communis	pycom01g20270 pycom07g23840
rosa_chinensis	RchiOBHm_Chr1g0376001
rosa_laevigata	RLG00000026636
rosa_multiflora	Rmu_ssc0000116.1_g000013
rosa_roxburghii	Rroxscaffold_4G00282430
rosa_rugosa	Rorug01G0393600 Rorug01G0393600 Rorug01G0393600
rosa_samantha	Rh1AG404900 Rh1BG368400 Rh1CG381300 Rh1DG398300
rosa_wichuraiana	Rw1G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	245
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	500
AciI	CCGC	2 cut(s)	121, 127
AclWI	GGATC	2 cut(s)	261, 371
AcsI	RAATTY	2 cut(s)	169, 284
AcuI	CTGAAG	2 cut(s)	338, 520
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	500, 673
AgsI	TTSAA	6 cut(s)	148, 284, 397, 546, 602, 689
AhlI	ACTAGT	1 cut(s)	730
AjnI	CCWGG	2 cut(s)	448, 708
AluBI	AGCT	6 cut(s)	31, 140, 389, 456, 477, 624
AluI	AGCT	6 cut(s)	31, 140, 389, 456, 477, 624
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	2 cut(s)	261, 371
AoxI	GGCC	1 cut(s)	706
ApeKI	GCWGC	2 cut(s)	140, 595
ApoI	RAATTY	2 cut(s)	169, 284
Asp700I	GAANNNNTTC	1 cut(s)	304
Asp718I	GGTACC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	487
AsuII	TTCGAA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	127, 582
BccI	CCATC	3 cut(s)	110, 455, 545
BciT130I	CCWGG	2 cut(s)	450, 710
BclI	TGATCA	3 cut(s)	163, 178, 519
BcoDI	GTCTC	1 cut(s)	741
BcuI	ACTAGT	1 cut(s)	730
BfaI	CTAG	3 cut(s)	528, 722, 731
BglII	AGATCT	1 cut(s)	539
BisI	GCNGC	3 cut(s)	121, 141, 596
BlsI	GCNGC	3 cut(s)	122, 142, 597
Bme1390I	CCNGG	2 cut(s)	450, 710
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	450, 710
BmsI	GCATC	2 cut(s)	195, 367
BpiI	GAAGAC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	731
Bpu14I	TTCGAA	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	562
BsaBI	GATNNNNATC	1 cut(s)	757
BsaJI	CCNNGG	2 cut(s)	19, 436
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 673
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	2 cut(s)	430, 667
Bse8I	GATNNNNATC	1 cut(s)	757
BseBI	CCWGG	2 cut(s)	450, 710
BseDI	CCNNGG	2 cut(s)	19, 436
BseGI	GGATG	1 cut(s)	746
BseJI	GATNNNNATC	1 cut(s)	757
BseLI	CCNNNNNNNGG	2 cut(s)	500, 673
BseMII	CTCAG	1 cut(s)	277
BseNI	ACTGG	2 cut(s)	430, 667
BseXI	GCAGC	2 cut(s)	127, 582
BshFI	GGCC	1 cut(s)	708
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	500, 673
BsmAI	GTCTC	1 cut(s)	741
BsnI	GGCC	1 cut(s)	708
Bsp119I	TTCGAA	1 cut(s)	173
Bsp143I	GATC	9 cut(s)	82, 163, 178, 266, 363, 519, 539, 682, 697
Bsp19I	CCATGG	1 cut(s)	436
BspACI	CCGC	2 cut(s)	121, 127
BspANI	GGCC	1 cut(s)	708
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	2 cut(s)	261, 371
BspT104I	TTCGAA	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	430, 667
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	19, 436
BssMI	GATC	9 cut(s)	82, 163, 178, 266, 363, 519, 539, 682, 697
BssT1I	CCWWGG	2 cut(s)	19, 436
Bst2UI	CCWGG	2 cut(s)	450, 710
Bst4CI	ACNGT	1 cut(s)	487
BstBI	TTCGAA	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	125, 612
BstDEI	CTNAG	1 cut(s)	263
BstDSI	CCRYGG	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	746
BstKTI	GATC	9 cut(s)	85, 166, 181, 269, 366, 522, 542, 685, 700
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	9 cut(s)	82, 163, 178, 266, 363, 519, 539, 682, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 386, 426
BstNI	CCWGG	2 cut(s)	450, 710
BstNSI	RCATGY	2 cut(s)	101, 257
BstSCI	CCNGG	2 cut(s)	448, 708
BstV1I	GCAGC	2 cut(s)	127, 582
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	266, 539
BstYI	RGATCY	2 cut(s)	266, 539
BsuRI	GGCC	1 cut(s)	708
BtgI	CCRYGG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	746
BtsIMutI	CAGTG	3 cut(s)	423, 429, 674
Cac8I	GCNNGC	2 cut(s)	125, 612
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	246
CspCI	CAANNNNNGTGG	2 cut(s)	479, 514
CviAII	CATG	6 cut(s)	98, 157, 254, 322, 437, 495
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	9 cut(s)	84, 165, 180, 268, 365, 521, 541, 684, 699
DpnII	GATC	9 cut(s)	82, 163, 178, 266, 363, 519, 539, 682, 697
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	19, 436
Eco32I	GATATC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	487
Eco57I	CTGAAG	2 cut(s)	338, 520
EcoRI	GAATTC	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	448, 708
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	19, 436
EcoT22I	ATGCAT	1 cut(s)	210
ErhI	CCWWGG	2 cut(s)	19, 436
FaeI	CATG	6 cut(s)	101, 160, 257, 325, 440, 498
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 582, 614
FatI	CATG	6 cut(s)	97, 156, 253, 321, 436, 494
FbaI	TGATCA	3 cut(s)	163, 178, 519
Fnu4HI	GCNGC	3 cut(s)	121, 141, 596
FokI	GGATG	1 cut(s)	733
Fsp4HI	GCNGC	3 cut(s)	121, 141, 596
FspBI	CTAG	3 cut(s)	528, 722, 731
GluI	GCNGC	3 cut(s)	121, 141, 596
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	708
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	6 cut(s)	101, 160, 257, 325, 440, 498
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	337, 490
Hpy188I	TCNGA	9 cut(s)	79, 87, 168, 266, 316, 357, 460, 539, 763
Hpy188III	TCNNGA	7 cut(s)	40, 281, 367, 517, 587, 686, 750
Hpy8I	GTNNAC	2 cut(s)	337, 490
HpyAV	CCTTC	3 cut(s)	225, 362, 577
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4V	TGCA	2 cut(s)	208, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 386, 426
HpyF3I	CTNAG	1 cut(s)	263
Hsp92II	CATG	6 cut(s)	101, 160, 257, 325, 440, 498
KpnI	GGTACC	1 cut(s)	249
KroI	GCCGGC	1 cut(s)	123
KroNI	GCCGGC	1 cut(s)	125
Ksp22I	TGATCA	3 cut(s)	163, 178, 519
Kzo9I	GATC	9 cut(s)	82, 163, 178, 266, 363, 519, 539, 682, 697
LmnI	GCTCC	2 cut(s)	461, 712
Lsp1109I	GCAGC	2 cut(s)	127, 582
LweI	GCATC	2 cut(s)	195, 367
MaeI	CTAG	3 cut(s)	528, 722, 731
MalI	GATC	9 cut(s)	84, 165, 180, 268, 365, 521, 541, 684, 699
MboI	GATC	9 cut(s)	82, 163, 178, 266, 363, 519, 539, 682, 697
MboII	GAAGA	8 cut(s)	28, 92, 202, 205, 208, 409, 534, 647
MflI	RGATCY	2 cut(s)	266, 539
MluCI	AATT	6 cut(s)	72, 131, 169, 284, 392, 414
MnlI	CCTC	6 cut(s)	66, 268, 288, 322, 643, 667
Mph1103I	ATGCAT	1 cut(s)	210
MreI	CGCCGGCG	1 cut(s)	123
MroNI	GCCGGC	1 cut(s)	123
MroXI	GAANNNNTTC	1 cut(s)	304
MslI	CAYNNNNRTG	1 cut(s)	751
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	2 cut(s)	450, 710
MvaI	CCWGG	2 cut(s)	450, 710
MwoI	GCNNNNNNNGC	3 cut(s)	301, 386, 426
NaeI	GCCGGC	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	436
NdeII	GATC	9 cut(s)	82, 163, 178, 266, 363, 519, 539, 682, 697
NgoMIV	GCCGGC	1 cut(s)	123
NlaIII	CATG	6 cut(s)	101, 160, 257, 325, 440, 498
NlaIV	GGNNCC	1 cut(s)	247
NsiI	ATGCAT	1 cut(s)	210
NspI	RCATGY	2 cut(s)	101, 257
NspV	TTCGAA	1 cut(s)	173
PdiI	GCCGGC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	88
PflMI	CCANNNNNTGG	1 cut(s)	500
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	122, 142, 597
Psp6I	CCWGG	2 cut(s)	448, 708
PspGI	CCWGG	2 cut(s)	448, 708
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	266, 539
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	751
SatI	GCNGC	3 cut(s)	121, 141, 596
Sau3AI	GATC	9 cut(s)	82, 163, 178, 266, 363, 519, 539, 682, 697
Sau96I	GGNCC	1 cut(s)	487
ScrFI	CCNGG	2 cut(s)	450, 710
SetI	ASST	8 cut(s)	33, 142, 354, 391, 458, 479, 626, 678
SfaNI	GCATC	2 cut(s)	195, 367
SfuI	TTCGAA	1 cut(s)	173
SgrAI	CRCCGGYG	1 cut(s)	123
SinI	GGWCC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	751
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
SpeI	ACTAGT	1 cut(s)	730
Sse9I	AATT	6 cut(s)	72, 131, 169, 284, 392, 414
SsiI	CCGC	2 cut(s)	121, 127
SspMI	CTAG	3 cut(s)	528, 722, 731
StyD4I	CCNGG	2 cut(s)	448, 708
StyI	CCWWGG	2 cut(s)	19, 436
TaaI	ACNGT	1 cut(s)	487
TaqI	TCGA	2 cut(s)	173, 308
TasI	AATT	6 cut(s)	72, 131, 169, 284, 392, 414
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	3 cut(s)	430, 436, 674
TseI	GCWGC	2 cut(s)	140, 595
TspDTI	ATGAA	4 cut(s)	36, 338, 647, 735
TspRI	CASTG	3 cut(s)	430, 436, 674
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	487
XapI	RAATTY	2 cut(s)	169, 284
XceI	RCATGY	2 cut(s)	101, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	304
XspI	CTAG	3 cut(s)	528, 722, 731
Zsp2I	ATGCAT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.