Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011597

Physical Location & Seq

Genomic Coordinates Reverse (-)

17816163 .. 17817513

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1112400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCCATACATTCATCCTCTCTCTGCAAGAATGATGACTAGGGTTGCTGACATATATTCGTTGCGAAAGCAGGGTAAGCGTTCGATATCTGACCACATGAACGAGGCTGTAAATTATATAAAGCACCTCCAGAATAGGATCAAGAGATTAGACGCCAAGAGAGCTGAACTGAAGAAGGTCTCCGATCTAATTAGCTCTAGTACTAGTACGGACGACCATGGTGGTGAAAGTTCCTACGGGGGATCGCCAAGCTGTTTCACAGTCCACCCATGTTGCGGTGGAGTGCAAATCGTGATCAGTACTGCCATCGGCTTCAGATCTGGAGAGGAAGGGTTACGCTTCTCAATTTCTAGGGTTTTAGAAGTGCTTCTTGAACAAGGGCTTTGTGTTGTGAGCTGTGTCTCCTCCAAAATAGATGACAGACTCCTTCATACTATCCAGTCCGAGGTGAATGATCTAGAGAGTATCAATCTTTCTGCGCTGGAACATAAACTAGATGAAGTGCTTCCACGATCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

174

Amino Acids

19.15

Weight (kDa)

7.7

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28590
malus_domestica	MD12G1112400.v1.1
prunus_persica	Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1
pyrus_communis	pycom01g20270 pycom07g23840
rosa_chinensis	RchiOBHm_Chr1g0376001
rosa_laevigata	RLG00000026636
rosa_multiflora	Rmu_ssc0000116.1_g000013
rosa_roxburghii	Rroxscaffold_4G00282430
rosa_rugosa	Rorug01G0393600 Rorug01G0393600 Rorug01G0393600
rosa_samantha	Rh1AG404900 Rh1BG368400 Rh1CG381300 Rh1DG398300
rosa_wichuraiana	Rw1G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	2 cut(s)	146, 250
AcuI	CTGAAG	2 cut(s)	191, 298
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	3 cut(s)	202, 208, 301
AfiI	CCNNNNNNNGG	2 cut(s)	275, 445
AgsI	TTSAA	1 cut(s)	374
AhlI	ACTAGT	1 cut(s)	203
AluBI	AGCT	4 cut(s)	164, 195, 252, 396
AluI	AGCT	4 cut(s)	164, 195, 252, 396
Alw26I	GTCTC	2 cut(s)	184, 406
AlwI	GGATC	2 cut(s)	146, 250
Asp700I	GAANNNNTTC	2 cut(s)	366, 504
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	236, 460
BccI	CCATC	1 cut(s)	314
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	184, 406
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	6 cut(s)	39, 198, 204, 351, 458, 494
BglII	AGATCT	1 cut(s)	317
BmcAI	AGTACT	2 cut(s)	202, 301
BpmI	CTGGAG	2 cut(s)	113, 342
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	217, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 445
Bse1I	ACTGG	1 cut(s)	439
BseDI	CCNNGG	2 cut(s)	217, 444
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	275, 445
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	394
BslI	CCNNNNNNNGG	2 cut(s)	275, 445
BsmAI	GTCTC	2 cut(s)	184, 406
Bso31I	GGTCTC	1 cut(s)	184
Bsp143I	GATC	7 cut(s)	138, 184, 242, 294, 317, 454, 512
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	1 cut(s)	276
BspPI	GGATC	2 cut(s)	146, 250
BspTNI	GGTCTC	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	217, 444
BssMI	GATC	7 cut(s)	138, 184, 242, 294, 317, 454, 512
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	7 cut(s)	141, 187, 245, 297, 320, 457, 515
BstMAI	GTCTC	2 cut(s)	184, 406
BstMBI	GATC	7 cut(s)	138, 184, 242, 294, 317, 454, 512
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 161
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	481
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	201, 207, 300
CspCI	CAANNNNNGTGG	2 cut(s)	254, 289
CviAII	CATG	3 cut(s)	97, 218, 270
CviJI	RGCY	7 cut(s)	107, 164, 195, 252, 312, 382, 396
CviKI_1	RGCY	7 cut(s)	107, 164, 195, 252, 312, 382, 396
CviQI	GTAC	3 cut(s)	201, 207, 300
DpnI	GATC	7 cut(s)	140, 186, 244, 296, 319, 456, 514
DpnII	GATC	7 cut(s)	138, 184, 242, 294, 317, 454, 512
Eco130I	CCWWGG	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	191, 298
EcoRV	GATATC	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	100, 221, 273
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FatI	CATG	3 cut(s)	96, 217, 269
FbaI	TGATCA	1 cut(s)	294
FspBI	CTAG	6 cut(s)	39, 198, 204, 351, 458, 494
GlaI	GCGC	1 cut(s)	480
GsuI	CTGGAG	2 cut(s)	113, 342
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	100, 221, 273
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	1 cut(s)	423
HphI	GGTGA	2 cut(s)	236, 460
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	4 cut(s)	91, 184, 317, 445
Hpy188III	TCNNGA	6 cut(s)	130, 142, 292, 321, 371, 458
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	169, 323, 437
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	26, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 161
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	100, 221, 273
HspAI	GCGC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	7 cut(s)	138, 184, 242, 294, 317, 454, 512
LpnPI	CCDG	5 cut(s)	56, 143, 306, 452, 467
MaeI	CTAG	6 cut(s)	39, 198, 204, 351, 458, 494
MaeIII	GTNAC	1 cut(s)	333
MalI	GATC	7 cut(s)	140, 186, 244, 296, 319, 456, 514
MboI	GATC	7 cut(s)	138, 184, 242, 294, 317, 454, 512
MboII	GAAGA	1 cut(s)	184
MflI	RGATCY	1 cut(s)	317
MluCI	AATT	3 cut(s)	112, 189, 345
MlyI	GAGTC	1 cut(s)	417
MnlI	CCTC	6 cut(s)	27, 97, 137, 319, 415, 439
MroXI	GAANNNNTTC	2 cut(s)	366, 504
MslI	CAYNNNNRTG	1 cut(s)	222
MwoI	GCNNNNNNNGC	2 cut(s)	76, 161
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	7 cut(s)	138, 184, 242, 294, 317, 454, 512
NlaIII	CATG	3 cut(s)	100, 221, 273
PdmI	GAANNNNTTC	2 cut(s)	366, 504
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PsuI	RGATCY	1 cut(s)	317
RsaI	GTAC	3 cut(s)	202, 208, 301
RsaNI	GTAC	3 cut(s)	201, 207, 300
RseI	CAYNNNNRTG	1 cut(s)	222
Sau3AI	GATC	7 cut(s)	138, 184, 242, 294, 317, 454, 512
ScaI	AGTACT	2 cut(s)	202, 301
SchI	GAGTC	1 cut(s)	417
SetI	ASST	7 cut(s)	129, 166, 180, 197, 254, 398, 450
SmiMI	CAYNNNNRTG	1 cut(s)	222
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	3 cut(s)	112, 189, 345
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	6 cut(s)	39, 198, 204, 351, 458, 494
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	112, 189, 345
TatI	WGTACW	2 cut(s)	200, 299
TspDTI	ATGAA	3 cut(s)	113, 419, 513
TspGWI	ACGGA	1 cut(s)	224
XbaI	TCTAGA	1 cut(s)	457
XmnI	GAANNNNTTC	2 cut(s)	366, 504
XspI	CTAG	6 cut(s)	39, 198, 204, 351, 458, 494
ZrmI	AGTACT	2 cut(s)	202, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.