Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011597

Physical Location & Seq

Genomic Coordinates Reverse (-)

61785370 .. 61787880

Gene Structure 2511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG398300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTTCCTTTACACCAGGGAAATAAGCTGGTCTTCCAGATTTCATCATCTAATCCTCACCACCAGAATTCATCAGAAGATAGGATTCTCGGATATGCTTCGCCGGATGGAAGCAGCAGTACTGTCCTTAGCAACAACAATAACATGGGGAAAAGCCGGCGGCGGAAATTAGTGGTTGCAGCTTTGGATCAGACAATTATTGAAAATTCAAAGGATAACAAGAAGAAGAAAATGATGATTCATAGGGAGAATGAAAGGCAAAGAAGGCAAGAAATGGCTACCTTATACTCCTGTCTTAGATCTCTACTCCCCCTTGAATTCATCAAGGGAAAGCGTTCGACGTCTGATCACATGAACGAAGCTGTGAACTACATAAAACACCTCCAGAATAGGATCAAAACATTAGACGCAAAGAGAGATGAATTGAAGAAATTCCCTAAAATAAGCACTGATATTGACCGTCGCTGCACTACTGGAAGCTCTTTGAATTCAGATAAGGTGAATTTGCCTAGCTGTTTTACAGTCCAGCCAAGTTCTGGTGGAGTGCAAATTTTGGTGAGTGGTAGCTTCAGAGAGGATGGGTTACCACTCATTTCAATCTCAAGCGTTTTGGAAATTCTGCTTGGACGAGGGCTTACTGTTGTTAGTTGTGTCTCCTCCCAAGTAAATGAAAGACTCCTTCACACTATCCAGATTGAGGTCGATGATGTGGAAAGTCTGGATCTTTCTGCGCTGGAACAGAAGCTAGCTAAAGCGCTTCCAACATCCAGAAGTACTATCTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

262

Amino Acids

29.26

Weight (kDa)

9.53

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	81 - 129	6.4e-12	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011597)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28590
malus_domestica	MD12G1112400.v1.1
prunus_persica	Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1 Prupe.2G285900_v2.0.a1
pyrus_communis	pycom01g20270 pycom07g23840
rosa_chinensis	RchiOBHm_Chr1g0376001
rosa_laevigata	RLG00000026636
rosa_multiflora	Rmu_ssc0000116.1_g000013
rosa_roxburghii	Rroxscaffold_4G00282430
rosa_rugosa	Rorug01G0393600 Rorug01G0393600 Rorug01G0393600
rosa_samantha	Rh1AG404900 Rh1BG368400 Rh1CG381300 Rh1DG398300
rosa_wichuraiana	Rw1G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	344
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	2 cut(s)	160, 163
AclWI	GGATC	3 cut(s)	195, 401, 729
AcsI	RAATTY	8 cut(s)	67, 205, 317, 431, 487, 502, 549, 615
AcuI	CTGAAG	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	2 cut(s)	121, 775
AfeI	AGCGCT	1 cut(s)	756
AfiI	CCNNNNNNNGG	2 cut(s)	536, 697
AgsI	TTSAA	6 cut(s)	203, 210, 317, 427, 487, 597
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	606, 638
AluBI	AGCT	8 cut(s)	28, 182, 362, 480, 513, 567, 745, 749
AluI	AGCT	8 cut(s)	28, 182, 362, 480, 513, 567, 745, 749
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	3 cut(s)	195, 401, 729
Aor51HI	AGCGCT	1 cut(s)	756
ApeKI	GCWGC	3 cut(s)	114, 179, 465
ApoI	RAATTY	8 cut(s)	67, 205, 317, 431, 487, 502, 549, 615
Asp700I	GAANNNNTTC	2 cut(s)	334, 431
AspLEI	GCGC	2 cut(s)	733, 757
AsuHPI	GGTGA	3 cut(s)	50, 511, 568
AsuNHI	GCTAGC	1 cut(s)	745
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	126, 191, 452
BccI	CCATC	2 cut(s)	101, 572
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	2 cut(s)	510, 746
BfoI	RGCGCY	1 cut(s)	758
BglII	AGATCT	1 cut(s)	299
BisI	GCNGC	4 cut(s)	115, 161, 180, 466
BlsI	GCNGC	4 cut(s)	116, 162, 181, 467
BmcAI	AGTACT	2 cut(s)	121, 775
Bme1390I	CCNGG	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	17
BmtI	GCTAGC	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 697
Bse118I	RCCGGY	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	3 cut(s)	112, 583, 764
BseLI	CCNNNNNNNGG	2 cut(s)	536, 697
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	646
BseXI	GCAGC	3 cut(s)	126, 191, 452
BsgI	GTGCAG	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	104, 157
BslI	CCNNNNNNNGG	2 cut(s)	536, 697
BsmAI	GTCTC	1 cut(s)	658
Bsp143I	GATC	5 cut(s)	187, 299, 346, 393, 721
BspACI	CCGC	2 cut(s)	160, 163
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	3 cut(s)	195, 401, 729
BsrFI	RCCGGY	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	5 cut(s)	187, 299, 346, 393, 721
BssNI	GRCGYC	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	4 cut(s)	124, 461, 523, 640
BstACI	GRCGYC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	158, 747
BstDEI	CTNAG	2 cut(s)	128, 296
BstEII	GGTNACC	1 cut(s)	582
BstF5I	GGATG	3 cut(s)	112, 583, 764
BstH2I	RGCGCY	1 cut(s)	758
BstHHI	GCGC	2 cut(s)	733, 757
BstKTI	GATC	5 cut(s)	190, 302, 349, 396, 724
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	5 cut(s)	187, 299, 346, 393, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstNI	CCWGG	1 cut(s)	17
BstPI	GGTNACC	1 cut(s)	582
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	126, 191, 452
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	299, 721
BstYI	RGATCY	2 cut(s)	299, 721
BtsCI	GGATG	3 cut(s)	112, 583, 764
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	158, 747
CfoI	GCGC	2 cut(s)	733, 757
Cfr10I	RCCGGY	1 cut(s)	156
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	120, 774
CviAII	CATG	2 cut(s)	145, 352
CviQI	GTAC	2 cut(s)	120, 774
DdeI	CTNAG	2 cut(s)	128, 296
DpnI	GATC	5 cut(s)	189, 301, 348, 395, 723
DpnII	GATC	5 cut(s)	187, 299, 346, 393, 721
EciI	GGCGGA	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	756
Eco57I	CTGAAG	1 cut(s)	553
Eco91I	GGTNACC	1 cut(s)	582
EcoO65I	GGTNACC	1 cut(s)	582
EcoRI	GAATTC	3 cut(s)	67, 317, 487
EcoRII	CCWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	148, 355
FaiI	YATR	6 cut(s)	96, 146, 243, 286, 353, 374
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	2 cut(s)	144, 351
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	4 cut(s)	115, 161, 180, 466
FokI	GGATG	3 cut(s)	119, 590, 751
Fsp4HI	GCNGC	4 cut(s)	115, 161, 180, 466
FspBI	CTAG	2 cut(s)	510, 746
GlaI	GCGC	2 cut(s)	732, 756
GluI	GCNGC	4 cut(s)	115, 161, 180, 466
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	758
HapII	CCGG	2 cut(s)	104, 157
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	2 cut(s)	733, 757
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	2 cut(s)	148, 355
Hin6I	GCGC	2 cut(s)	731, 755
HinP1I	GCGC	2 cut(s)	731, 755
HinfI	GANTC	3 cut(s)	85, 238, 675
HpaII	CCGG	2 cut(s)	104, 157
HphI	GGTGA	3 cut(s)	50, 511, 568
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	6 cut(s)	76, 92, 192, 346, 493, 572
Hpy188III	TCNNGA	5 cut(s)	37, 385, 691, 719, 768
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	2 cut(s)	343, 465
HpyAV	CCTTC	2 cut(s)	258, 689
HpyCH4III	ACNGT	4 cut(s)	124, 461, 523, 640
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	179, 468, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpyF3I	CTNAG	2 cut(s)	128, 296
HpySE526I	ACGT	1 cut(s)	341
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	148, 355
HspAI	GCGC	2 cut(s)	731, 755
KroI	GCCGGC	1 cut(s)	156
KroNI	GCCGGC	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	187, 299, 346, 393, 721
Lsp1109I	GCAGC	3 cut(s)	126, 191, 452
MaeI	CTAG	2 cut(s)	510, 746
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	582
MalI	GATC	5 cut(s)	189, 301, 348, 395, 723
MboI	GATC	5 cut(s)	187, 299, 346, 393, 721
MboII	GAAGA	5 cut(s)	25, 89, 235, 238, 439
MflI	RGATCY	2 cut(s)	299, 721
MlyI	GAGTC	1 cut(s)	669
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	6 cut(s)	66, 392, 568, 623, 667, 691
MroNI	GCCGGC	1 cut(s)	156
MroXI	GAANNNNTTC	2 cut(s)	334, 431
MspI	CCGG	2 cut(s)	104, 157
MspR9I	CCNGG	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	265
NaeI	GCCGGC	1 cut(s)	158
NdeII	GATC	5 cut(s)	187, 299, 346, 393, 721
NgoMIV	GCCGGC	1 cut(s)	156
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	2 cut(s)	148, 355
PdiI	GCCGGC	1 cut(s)	158
PdmI	GAANNNNTTC	2 cut(s)	334, 431
PfeI	GAWTC	2 cut(s)	85, 238
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	4 cut(s)	116, 162, 181, 467
PleI	GAGTC	1 cut(s)	669
PpsI	GAGTC	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	15
PspEI	GGTNACC	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	15
PsuI	RGATCY	2 cut(s)	299, 721
RsaI	GTAC	2 cut(s)	121, 775
RsaNI	GTAC	2 cut(s)	120, 774
SatI	GCNGC	4 cut(s)	115, 161, 180, 466
Sau3AI	GATC	5 cut(s)	187, 299, 346, 393, 721
ScaI	AGTACT	2 cut(s)	121, 775
SchI	GAGTC	1 cut(s)	669
ScrFI	CCNGG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
SsiI	CCGC	2 cut(s)	160, 163
SspMI	CTAG	2 cut(s)	510, 746
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	4 cut(s)	124, 461, 523, 640
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	2 cut(s)	338, 702
TatI	WGTACW	2 cut(s)	119, 773
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	85, 238
TscAI	CASTG	1 cut(s)	454
TseI	GCWGC	3 cut(s)	114, 179, 465
TspDTI	ATGAA	8 cut(s)	33, 60, 230, 267, 310, 368, 435, 684
TspRI	CASTG	1 cut(s)	454
Van91I	CCANNNNNTGG	1 cut(s)	536
XapI	RAATTY	8 cut(s)	67, 205, 317, 431, 487, 502, 549, 615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XmnI	GAANNNNTTC	2 cut(s)	334, 431
XspI	CTAG	2 cut(s)	510, 746
ZraI	GACGTC	1 cut(s)	342
ZrmI	AGTACT	2 cut(s)	121, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.