Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016925

Physical Location & Seq

Genomic Coordinates Forward (+)

21189324 .. 21191946

Gene Structure 2623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCTTTCTGGTTTGTTTTCGAGTAAAATGCCCTGGAACTGCTTTTGTTGCGTCGACTCTCAGGAAGAGAATCAGCCAGAGACCCCCAGGGTGACCAAGAATAGAGATTACCCTTGGGATATATACCCTCTCAAGGAGCTTCTTCATGCAACAAACAACTTCCACCATGATAACAAGATCGGTGAGGGAGGTTTTGGAAGTGTGTATTGGGGTCGAACAAGCAAAGGTGTCGAGATAGCAGTGAAACGACTGAAGACCATGAGCCCAAAGGCGGAGATGGAGTTTGCGGTGGAAGTTGAGATACTAGGGAGGGTGAGACATAGAAATTTGTTAGGGCTGCGTGGATTCTACGCCGGGGGTGATGAACGACTCATAGTGTATGATTTCATGCCTAACCATAGCCTGATCACCCATTTACATGGCCAGCTTGCGAATGATTGTCTTCTTGATTGGCCAAGAAGATTGAGCATCATGATCGGATCAGCTGATGGCTTATCGTACCTGCACCATGAGGCCAATCCTCATATAATACACAGAGATATAAAGGCAAGCAATGTGCTTCTAGACAATGATTTTCAAGCAAAAGTCGCTGATTTTGGATTTGCAAAGCTGATTCCAGAGGGTGTGAGCCATCTGACAACTAGAGTGAAAGGAACTCTTGGTTATTTAGCTCCTGAATATGCTATGTGGGGAAAAGTTTCAGAGAGTTGTGATGTTTACAGCTTTGGTATCTTGCTCTTAGAGATAATTAGCGGAAGAAAGCCAATAGAGAAACTCCCTGGTGGAGTAAAACGTGACATTGTGCAATGGGCAACCCCCTATGTCGAAAAGGGTGCATATAATCACATTGCAGATCCAAGGTTGAAGGGCAAGTTCGATCGTGAACAAGTGAAGTTCACTATCACGATTGCGATGAAATGTACCGATAACAGCCCCGAGAATCGACCCACCATGAAACAAGTAGCGGATTGGCTTAAGGGGGGAATGGGAACAAGGAAGAAGGAGATAACAAATGTGGGAGGCATGGAGGATGATGAAAATGAAGAAAACGACGGAAATGATACTGATTTTGAAGGGTATGGAATGGAGGTTTCTGATAACAAAAAGGATGCTACAAATGCTAAATCACAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

379

Amino Acids

42.64

Weight (kDa)

6.25

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	54 - 322	8.6e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	56 - 323	8.2e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28620
malus_domestica	MD00G1002700.v1.1 MD01G1191900.v1.1
prunus_persica	Prupe.2G286200_v2.0.a1
pyrus_communis	pycom01g20300 pycom07g23870
rosa_chinensis	RchiOBHm_Chr1g0376081
rosa_multiflora	Rmu_ssc0000116.1_g000028
rosa_roxburghii	Rroxscaffold_4G00282400
rosa_rugosa	Rorug01G0393800
rosa_samantha	Rh1AG405200 Rh1BG368800 Rh1DG398700
rosa_wichuraiana	Rw1G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	510
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	4 cut(s)	272, 287, 753, 965
AclWI	GGATC	2 cut(s)	487, 848
AcoI	YGGCCR	2 cut(s)	421, 452
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	2 cut(s)	500, 922
AfiI	CCNNNNNNNGG	2 cut(s)	133, 271
AflII	CTTAAG	1 cut(s)	974
AgsI	TTSAA	3 cut(s)	578, 865, 1073
AjnI	CCWGG	3 cut(s)	32, 86, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AluBI	AGCT	6 cut(s)	139, 427, 485, 610, 671, 723
AluI	AGCT	6 cut(s)	139, 427, 485, 610, 671, 723
Alw26I	GTCTC	2 cut(s)	74, 310
AlwI	GGATC	2 cut(s)	487, 848
Ama87I	CYCGRG	1 cut(s)	935
AoxI	GGCC	3 cut(s)	421, 452, 513
ApeKI	GCWGC	1 cut(s)	337
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	697
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	5 cut(s)	103, 194, 325, 371, 400
AvaI	CYCGRG	1 cut(s)	935
BalI	TGGCCA	2 cut(s)	423, 454
BanII	GRGCYC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BbsI	GAAGAC	2 cut(s)	260, 434
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	3 cut(s)	271, 482, 639
BcgI	CGANNNNNNTGC	8 cut(s)	10, 44, 211, 245, 457, 491, 815, 849
BciT130I	CCWGG	3 cut(s)	34, 88, 780
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	2 cut(s)	74, 310
BfaI	CTAG	3 cut(s)	305, 563, 642
BfrI	CTTAAG	1 cut(s)	974
BfuAI	ACCTGC	1 cut(s)	510
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	4 cut(s)	34, 88, 355, 780
BmeT110I	CYCGRG	1 cut(s)	935
BmrFI	CCNGG	4 cut(s)	34, 88, 355, 780
BmsI	GCATC	2 cut(s)	477, 1099
BpiI	GAAGAC	2 cut(s)	260, 434
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	7 cut(s)	32, 86, 87, 113, 354, 778, 857
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 271
Bse3DI	GCAATG	3 cut(s)	559, 812, 846
BseBI	CCWGG	3 cut(s)	34, 88, 780
BseDI	CCNNGG	7 cut(s)	32, 86, 87, 113, 354, 778, 857
BseGI	GGATG	2 cut(s)	1036, 1114
BseLI	CCNNNNNNNGG	2 cut(s)	133, 271
BseMI	GCAATG	3 cut(s)	559, 812, 846
BseMII	CTCAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	324
BsgI	GTGCAG	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	880
BshFI	GGCC	3 cut(s)	423, 454, 515
BsiEI	CGRYCG	1 cut(s)	880
BsiHKCI	CYCGRG	1 cut(s)	935
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	2 cut(s)	133, 271
BsmAI	GTCTC	2 cut(s)	74, 310
BsnI	GGCC	3 cut(s)	423, 454, 515
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	935
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	6 cut(s)	177, 405, 474, 479, 853, 877
BspACI	CCGC	4 cut(s)	272, 287, 753, 965
BspANI	GGCC	3 cut(s)	423, 454, 515
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	471
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	487, 848
BspTI	CTTAAG	1 cut(s)	974
BspTNI	GGTCTC	1 cut(s)	74
BsrDI	GCAATG	3 cut(s)	559, 812, 846
BssECI	CCNNGG	7 cut(s)	32, 86, 87, 113, 354, 778, 857
BssMI	GATC	6 cut(s)	177, 405, 474, 479, 853, 877
BssT1I	CCWWGG	2 cut(s)	113, 857
Bst2UI	CCWGG	3 cut(s)	34, 88, 780
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	974
BstC8I	GCNNGC	3 cut(s)	425, 429, 550
BstDEI	CTNAG	2 cut(s)	60, 739
BstEII	GGTNACC	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	1036, 1114
BstKTI	GATC	6 cut(s)	180, 408, 477, 482, 856, 880
BstMAI	GTCTC	2 cut(s)	74, 310
BstMBI	GATC	6 cut(s)	177, 405, 474, 479, 853, 877
BstMCI	CGRYCG	1 cut(s)	880
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 587, 1118
BstNI	CCWGG	3 cut(s)	34, 88, 780
BstPI	GGTNACC	1 cut(s)	91
BstSCI	CCNGG	4 cut(s)	32, 86, 353, 778
BstV1I	GCAGC	1 cut(s)	324
BstV2I	GAAGAC	2 cut(s)	260, 434
BstX2I	RGATCY	1 cut(s)	853
BstXI	CCANNNNNNTGG	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	853
BsuRI	GGCC	3 cut(s)	423, 454, 515
BtgZI	GCGATG	1 cut(s)	926
BtsCI	GGATG	2 cut(s)	1036, 1114
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	3 cut(s)	425, 429, 550
CciI	TCATGA	1 cut(s)	471
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	499, 921
CviAII	CATG	9 cut(s)	146, 167, 259, 388, 419, 472, 509, 952, 1024
CviQI	GTAC	2 cut(s)	499, 921
DdeI	CTNAG	2 cut(s)	60, 739
DpnI	GATC	6 cut(s)	179, 407, 476, 481, 855, 879
DpnII	GATC	6 cut(s)	177, 405, 474, 479, 853, 877
EaeI	YGGCCR	2 cut(s)	421, 452
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	287
Eco130I	CCWWGG	2 cut(s)	113, 857
Eco24I	GRGCYC	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	935
Eco91I	GGTNACC	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	91
EcoRII	CCWGG	3 cut(s)	32, 86, 778
EcoT14I	CCWWGG	2 cut(s)	113, 857
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	2 cut(s)	113, 857
FaeI	CATG	9 cut(s)	149, 170, 262, 391, 422, 475, 512, 955, 1027
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	9 cut(s)	145, 166, 258, 387, 418, 471, 508, 951, 1023
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	2 cut(s)	1043, 1121
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	3 cut(s)	305, 563, 642
GluI	GCNGC	1 cut(s)	338
HaeIII	GGCC	3 cut(s)	423, 454, 515
HapII	CCGG	1 cut(s)	354
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	9 cut(s)	149, 170, 262, 391, 422, 475, 512, 955, 1027
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	6 cut(s)	56, 70, 345, 369, 613, 940
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	5 cut(s)	103, 194, 325, 371, 400
Hpy166II	GTNNAC	4 cut(s)	55, 718, 884, 897
Hpy188I	TCNGA	4 cut(s)	479, 636, 703, 1096
Hpy188III	TCNNGA	9 cut(s)	62, 232, 446, 472, 563, 617, 674, 881, 904
Hpy8I	GTNNAC	4 cut(s)	55, 718, 884, 897
Hpy99I	CGWCG	2 cut(s)	56, 1055
HpyAV	CCTTC	3 cut(s)	859, 994, 1067
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	6 cut(s)	149, 505, 605, 805, 836, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 587, 1118
HpyF3I	CTNAG	2 cut(s)	60, 739
HpySE526I	ACGT	1 cut(s)	793
Hsp92II	CATG	9 cut(s)	149, 170, 262, 391, 422, 475, 512, 955, 1027
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	6 cut(s)	177, 405, 474, 479, 853, 877
LmnI	GCTCC	2 cut(s)	136, 676
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	2 cut(s)	477, 1099
MaeI	CTAG	3 cut(s)	305, 563, 642
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	2 cut(s)	91, 794
MalI	GATC	6 cut(s)	179, 407, 476, 481, 855, 879
MboI	GATC	6 cut(s)	177, 405, 474, 479, 853, 877
MboII	GAAGA	8 cut(s)	77, 134, 265, 434, 471, 768, 1009, 1055
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	1 cut(s)	266
MlsI	TGGCCA	2 cut(s)	423, 454
MluCI	AATT	2 cut(s)	325, 747
MluNI	TGGCCA	2 cut(s)	423, 454
MlyI	GAGTC	2 cut(s)	50, 363
Mox20I	TGGCCA	2 cut(s)	423, 454
MroXI	GAANNNNTTC	1 cut(s)	697
MscI	TGGCCA	2 cut(s)	423, 454
MseI	TTAA	1 cut(s)	975
MslI	CAYNNNNRTG	2 cut(s)	417, 1132
Msp20I	TGGCCA	2 cut(s)	423, 454
MspA1I	CMGCKG	1 cut(s)	485
MspCI	CTTAAG	1 cut(s)	974
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	4 cut(s)	34, 88, 355, 780
MvaI	CCWGG	3 cut(s)	34, 88, 780
MwoI	GCNNNNNNNGC	3 cut(s)	48, 587, 1118
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	6 cut(s)	177, 405, 474, 479, 853, 877
NlaIII	CATG	9 cut(s)	149, 170, 262, 391, 422, 475, 512, 955, 1027
NmuCI	GTSAC	2 cut(s)	91, 794
PagI	TCATGA	1 cut(s)	471
PasI	CCCWGGG	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	4 cut(s)	70, 345, 613, 940
PkrI	GCNGC	1 cut(s)	339
Ple19I	CGATCG	1 cut(s)	880
PleI	GAGTC	2 cut(s)	50, 363
PpsI	GAGTC	2 cut(s)	50, 363
Psp6I	CCWGG	3 cut(s)	32, 86, 778
PspEI	GGTNACC	1 cut(s)	91
PspGI	CCWGG	3 cut(s)	32, 86, 778
PsuI	RGATCY	1 cut(s)	853
PvuI	CGATCG	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	2 cut(s)	500, 922
RsaNI	GTAC	2 cut(s)	499, 921
RseI	CAYNNNNRTG	2 cut(s)	417, 1132
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	975
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	6 cut(s)	177, 405, 474, 479, 853, 877
SchI	GAGTC	2 cut(s)	50, 363
ScrFI	CCNGG	4 cut(s)	34, 88, 355, 780
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	2 cut(s)	477, 1099
SmiMI	CAYNNNNRTG	2 cut(s)	417, 1132
SmlI	CTYRAG	2 cut(s)	131, 974
SmoI	CTYRAG	2 cut(s)	131, 974
Sse9I	AATT	2 cut(s)	325, 747
SsiI	CCGC	4 cut(s)	272, 287, 753, 965
SspMI	CTAG	3 cut(s)	305, 563, 642
StyD4I	CCNGG	4 cut(s)	32, 86, 353, 778
StyI	CCWWGG	2 cut(s)	113, 857
TaiI	ACGT	1 cut(s)	796
TaqI	TCGA	7 cut(s)	20, 54, 214, 231, 825, 876, 943
TasI	AATT	2 cut(s)	325, 747
TfiI	GAWTC	4 cut(s)	70, 345, 613, 940
Tru1I	TTAA	1 cut(s)	975
Tru9I	TTAA	1 cut(s)	975
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	91, 794
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	91, 794
TspDTI	ATGAA	7 cut(s)	134, 376, 378, 929, 968, 1050, 1056
TspGWI	ACGGA	1 cut(s)	1068
TspRI	CASTG	1 cut(s)	246
Vha464I	CTTAAG	1 cut(s)	974
XapI	RAATTY	1 cut(s)	325
XbaI	TCTAGA	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	3 cut(s)	305, 563, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.