Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016925

Physical Location & Seq

Genomic Coordinates Forward (+)

63350767 .. 63353071

Gene Structure 2305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59974

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGTTTCTGATTTCTTTTCGAGTAAAATGCCCTGGAACTGCTTTTGTTGCGTCTCTCAGGAAGAGGATCAGCCAGAGACCCCCAGGGTGACCAAGAATAGAGATTACCCTTGGGATATATACCCTCTCAAAGAGCTTCTTCATGCAACAAACAACTTCCACCATGAAAACAAGATCGGTGAGGGAGGTTTTGGAAGTGTTTATTGGGGTCGAACAAGCAAAGGCGTGGAGATAGCAGTGAAACGACTAAAGACCATGAGCGCAAAGGCTGAGATGGAGTTTGCGGTGGAAGTTGAGATACTAGGGAGGGTGAGACATAGAAATTTGTTAGGGCTGCGTGGATTCTACGCCGGAGGTGATGAAAGACTAATAGTGTATGATTTCATGCCTAATCATAGCCTGATCACCCATTTACATGGCCAACTTGCAAATGATTGTCTTCTTGATTGGCCAAGAAGAATGAGCATCATCATTGGAGCGGCTGATGGCTTATCGTACCTGCACCATGAGGCCAATCCTCATATAATACACAGAGACATAAAGGCAAGCAATGTGCTTCTAGACATTGATTTTCAAGCAAAAGTTGCTGATTTTGGATTTGCAAAGCTGATTCCGGAGGGTGTGAGTCATCTGACTACTAGAGTGAAAGGAACTCTTGGATATTTAGCTCCTGAATATGCTATGTGGGGAAAAGTTTCAGAAAGTTGTGATGTTTATAGCTTTGGTATCTTGCTTTTAGAAATAATTAGCGGAAGAAAGCCAATAGAGAAACTCCCTGGCGGAGTGAAACGTGACATTGTGCAATGGGCAACCCCTTATGTCCAAAAGGGTGCATACAATCACATTGCAGATCCAAAGTTGAAGGGCAAGTTCGACCGCGAACAAGTGAAGTCCACTATCATGATTGCGATGAAATGTACCGATAACAGCCCCGAGAATCGACCCACAATGAAAGAAGTAGTGGATTGGCTTAAGGGGGGAATAGGAACAAGGAAGAAAGATTTAACAGATGTGGGAGGCATCGAGGATGATGAAAATGAAGAAAACGACGGAAATGATACCGATTTTGAAGGGTACGAGATGGAGGTTTCTGATACCAAAAAGAATATAACAAAGGCTAAATCACAAAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

42.76

Weight (kDa)

6.25

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	53 - 321	1.4e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	55 - 322	2.8e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28620
malus_domestica	MD00G1002700.v1.1 MD01G1191900.v1.1
prunus_persica	Prupe.2G286200_v2.0.a1
pyrus_communis	pycom01g20300 pycom07g23870
rosa_chinensis	RchiOBHm_Chr1g0376081
rosa_multiflora	Rmu_ssc0000116.1_g000028
rosa_roxburghii	Rroxscaffold_4G00282400
rosa_rugosa	Rorug01G0393800
rosa_samantha	Rh1AG405200 Rh1BG368800 Rh1DG398700
rosa_wichuraiana	Rw1G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	507
AccBSI	CCGCTC	1 cut(s)	479
AccII	CGCG	1 cut(s)	879
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	5 cut(s)	284, 479, 750, 780, 877
AclWI	GGATC	2 cut(s)	75, 845
AcoI	YGGCCR	2 cut(s)	418, 449
AcsI	RAATTY	1 cut(s)	322
AfaI	GTAC	3 cut(s)	497, 919, 1076
AflII	CTTAAG	1 cut(s)	971
AgsI	TTSAA	3 cut(s)	575, 862, 1070
AjnI	CCWGG	3 cut(s)	32, 83, 775
AjuI	GAANNNNNNNTTGG	2 cut(s)	187, 219
AluBI	AGCT	4 cut(s)	136, 607, 668, 720
AluI	AGCT	4 cut(s)	136, 607, 668, 720
Alw26I	GTCTC	4 cut(s)	58, 71, 307, 528
AlwI	GGATC	2 cut(s)	75, 845
Ama87I	CYCGRG	1 cut(s)	932
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	3 cut(s)	418, 449, 510
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	694
AspLEI	GCGC	1 cut(s)	263
AsuHPI	GGTGA	5 cut(s)	100, 191, 322, 368, 397
AvaI	CYCGRG	1 cut(s)	932
BalI	TGGCCA	2 cut(s)	420, 451
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	3 cut(s)	268, 479, 1075
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	3 cut(s)	34, 85, 777
BclI	TGATCA	1 cut(s)	402
BcoDI	GTCTC	4 cut(s)	58, 71, 307, 528
BfaI	CTAG	3 cut(s)	302, 560, 639
BfrI	CTTAAG	1 cut(s)	971
BfuAI	ACCTGC	1 cut(s)	507
BisI	GCNGC	2 cut(s)	335, 480
BlsI	GCNGC	2 cut(s)	336, 481
Bme1390I	CCNGG	3 cut(s)	34, 85, 777
BmeT110I	CYCGRG	1 cut(s)	932
BmrFI	CCNGG	3 cut(s)	34, 85, 777
BmsI	GCATC	2 cut(s)	474, 1029
BpiI	GAAGAC	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	32, 83, 84, 110, 775
BsaWI	WCCGGW	1 cut(s)	613
Bse3DI	GCAATG	3 cut(s)	556, 809, 843
BseAI	TCCGGA	1 cut(s)	613
BseBI	CCWGG	3 cut(s)	34, 85, 777
BseDI	CCNNGG	5 cut(s)	32, 83, 84, 110, 775
BseGI	GGATG	1 cut(s)	1033
BseMI	GCAATG	3 cut(s)	556, 809, 843
BseMII	CTCAG	2 cut(s)	71, 261
BseXI	GCAGC	1 cut(s)	321
BsgI	GTGCAG	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	879
Bsh1285I	CGRYCG	1 cut(s)	877
BshFI	GGCC	3 cut(s)	420, 451, 512
BsiEI	CGRYCG	1 cut(s)	877
BsiHKCI	CYCGRG	1 cut(s)	932
BsiSI	CCGG	2 cut(s)	351, 614
BsmAI	GTCTC	4 cut(s)	58, 71, 307, 528
BsmBI	CGTCTC	1 cut(s)	58
BsnI	GGCC	3 cut(s)	420, 451, 512
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	932
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	4 cut(s)	67, 174, 402, 850
BspACI	CCGC	5 cut(s)	284, 479, 750, 780, 877
BspANI	GGCC	3 cut(s)	420, 451, 512
BspCNI	CTCAG	2 cut(s)	70, 262
BspEI	TCCGGA	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	879
BspHI	TCATGA	1 cut(s)	900
BspMI	ACCTGC	1 cut(s)	507
BspPI	GGATC	2 cut(s)	75, 845
BspTI	CTTAAG	1 cut(s)	971
BspTNI	GGTCTC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	479
BsrDI	GCAATG	3 cut(s)	556, 809, 843
BssECI	CCNNGG	5 cut(s)	32, 83, 84, 110, 775
BssMI	GATC	4 cut(s)	67, 174, 402, 850
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	3 cut(s)	34, 85, 777
Bst6I	CTCTTC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	971
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	2 cut(s)	57, 270
BstEII	GGTNACC	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	1033
BstFNI	CGCG	1 cut(s)	879
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	4 cut(s)	70, 177, 405, 853
BstMAI	GTCTC	4 cut(s)	58, 71, 307, 528
BstMBI	GATC	4 cut(s)	67, 174, 402, 850
BstMCI	CGRYCG	1 cut(s)	877
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 584
BstNI	CCWGG	3 cut(s)	34, 85, 777
BstPI	GGTNACC	1 cut(s)	88
BstSCI	CCNGG	3 cut(s)	32, 83, 775
BstUI	CGCG	1 cut(s)	879
BstV1I	GCAGC	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	850
BstXI	CCANNNNNNTGG	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	850
BsuRI	GGCC	3 cut(s)	420, 451, 512
BtgZI	GCGATG	1 cut(s)	923
BtsCI	GGATG	1 cut(s)	1033
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	547
CciI	TCATGA	1 cut(s)	900
CfoI	GCGC	1 cut(s)	263
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	3 cut(s)	496, 918, 1075
CviAII	CATG	7 cut(s)	143, 164, 256, 385, 416, 506, 901
CviQI	GTAC	3 cut(s)	496, 918, 1075
DdeI	CTNAG	2 cut(s)	57, 270
DpnI	GATC	4 cut(s)	69, 176, 404, 852
DpnII	GATC	4 cut(s)	67, 174, 402, 850
EaeI	YGGCCR	2 cut(s)	418, 449
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	795
Eco130I	CCWWGG	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	932
Eco91I	GGTNACC	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	88
EcoRII	CCWGG	3 cut(s)	32, 83, 775
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	7 cut(s)	146, 167, 259, 388, 419, 509, 904
FalI	AAGNNNNNCTT	4 cut(s)	123, 155, 639, 671
FatI	CATG	7 cut(s)	142, 163, 255, 384, 415, 505, 900
FbaI	TGATCA	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	335, 480
FokI	GGATG	1 cut(s)	1040
Fsp4HI	GCNGC	2 cut(s)	335, 480
FspBI	CTAG	3 cut(s)	302, 560, 639
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	2 cut(s)	335, 480
HaeIII	GGCC	3 cut(s)	420, 451, 512
HapII	CCGG	2 cut(s)	351, 614
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	7 cut(s)	146, 167, 259, 388, 419, 509, 904
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	4 cut(s)	342, 610, 625, 937
HpaII	CCGG	2 cut(s)	351, 614
HphI	GGTGA	5 cut(s)	100, 191, 322, 368, 397
Hpy166II	GTNNAC	1 cut(s)	894
Hpy188I	TCNGA	4 cut(s)	10, 633, 700, 1093
Hpy188III	TCNNGA	6 cut(s)	59, 443, 560, 614, 671, 901
Hpy8I	GTNNAC	1 cut(s)	894
Hpy99I	CGWCG	1 cut(s)	1052
HpyAV	CCTTC	2 cut(s)	856, 1064
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	7 cut(s)	146, 428, 502, 602, 802, 833, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 584
HpyF3I	CTNAG	2 cut(s)	57, 270
HpySE526I	ACGT	1 cut(s)	790
Hsp92II	CATG	7 cut(s)	146, 167, 259, 388, 419, 509, 904
HspAI	GCGC	1 cut(s)	261
Kpn2I	TCCGGA	1 cut(s)	613
Ksp22I	TGATCA	1 cut(s)	402
Kzo9I	GATC	4 cut(s)	67, 174, 402, 850
LmnI	GCTCC	2 cut(s)	476, 673
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	2 cut(s)	474, 1029
MaeI	CTAG	3 cut(s)	302, 560, 639
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	2 cut(s)	88, 791
MalI	GATC	4 cut(s)	69, 176, 404, 852
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	4 cut(s)	67, 174, 402, 850
MboII	GAAGA	7 cut(s)	74, 131, 431, 468, 765, 1006, 1052
MflI	RGATCY	1 cut(s)	850
MlsI	TGGCCA	2 cut(s)	420, 451
MluCI	AATT	2 cut(s)	322, 744
MluNI	TGGCCA	2 cut(s)	420, 451
MlyI	GAGTC	1 cut(s)	634
Mox20I	TGGCCA	2 cut(s)	420, 451
MroI	TCCGGA	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	694
MscI	TGGCCA	2 cut(s)	420, 451
MseI	TTAA	2 cut(s)	972, 1004
MslI	CAYNNNNRTG	2 cut(s)	414, 899
Msp20I	TGGCCA	2 cut(s)	420, 451
MspCI	CTTAAG	1 cut(s)	971
MspI	CCGG	2 cut(s)	351, 614
MspR9I	CCNGG	3 cut(s)	34, 85, 777
MvaI	CCWGG	3 cut(s)	34, 85, 777
MvnI	CGCG	1 cut(s)	879
MwoI	GCNNNNNNNGC	2 cut(s)	48, 584
NdeII	GATC	4 cut(s)	67, 174, 402, 850
NlaIII	CATG	7 cut(s)	146, 167, 259, 388, 419, 509, 904
NmuCI	GTSAC	2 cut(s)	88, 791
PagI	TCATGA	1 cut(s)	900
PasI	CCCWGGG	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	694
PfeI	GAWTC	3 cut(s)	342, 610, 937
PkrI	GCNGC	2 cut(s)	336, 481
PleI	GAGTC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	633
Psp6I	CCWGG	3 cut(s)	32, 83, 775
PspEI	GGTNACC	1 cut(s)	88
PspGI	CCWGG	3 cut(s)	32, 83, 775
PsuI	RGATCY	1 cut(s)	850
RsaI	GTAC	3 cut(s)	497, 919, 1076
RsaNI	GTAC	3 cut(s)	496, 918, 1075
RseI	CAYNNNNRTG	2 cut(s)	414, 899
SaqAI	TTAA	2 cut(s)	972, 1004
SatI	GCNGC	2 cut(s)	335, 480
Sau3AI	GATC	4 cut(s)	67, 174, 402, 850
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	3 cut(s)	34, 85, 777
SetI	ASST	9 cut(s)	138, 190, 358, 501, 609, 670, 722, 793, 1089
SfaNI	GCATC	2 cut(s)	474, 1029
SmiMI	CAYNNNNRTG	2 cut(s)	414, 899
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
Sse9I	AATT	2 cut(s)	322, 744
SsiI	CCGC	5 cut(s)	284, 479, 750, 780, 877
SspMI	CTAG	3 cut(s)	302, 560, 639
StyD4I	CCNGG	3 cut(s)	32, 83, 775
StyI	CCWWGG	1 cut(s)	110
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	5 cut(s)	20, 211, 873, 940, 1023
TasI	AATT	2 cut(s)	322, 744
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	3 cut(s)	342, 610, 937
Tru1I	TTAA	2 cut(s)	972, 1004
Tru9I	TTAA	2 cut(s)	972, 1004
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	2 cut(s)	88, 791
TseI	GCWGC	1 cut(s)	334
Tsp45I	GTSAC	2 cut(s)	88, 791
TspDTI	ATGAA	8 cut(s)	131, 180, 373, 375, 926, 965, 1047, 1053
TspGWI	ACGGA	1 cut(s)	1065
TspRI	CASTG	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	971
XapI	RAATTY	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	694
XspI	CTAG	3 cut(s)	302, 560, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.