Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016925

Physical Location & Seq

Genomic Coordinates Reverse (-)

4447054 .. 4450620

Gene Structure 3567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGTTTTCGGGCCGGTCGGGTCGACGAAGGCCGGGGTGGCTTCGATCCATGTTTGGGGGCAGCGGCGGGGCAAGGCGACACGGAGGAGGCTAGGCGAGGAGCGGCGATCCCGGGGAGCCGGGAAGAGGATCAGCCAGAGACCCCCAGGGTGACCAAGAATAGAGATTACCCTTGGGATATATACCCTCTCAAGGAGCTTCTTCACGCAACAAACAACTTCCACCATGATAACAAGATCGGTGAGGGAGGTTTTGGAAGTGTTTATTGGGGTCGAACAAGCAAAGGCGTGGAGATAGCAGTGAAACGACTAAAGACCATGAGCGCAAAGGCCGAGATGGAGTTTGCGGTGGAAGTTGAGATACTAGGGAGGGTGAGACATAGAAATTTGTTAGGGCTGCGTGGATTCTATGCCGGAGGTGATGAAAGACTAATAGTGTATGATTTCATGCCTAATCATAGCCTGATCACCCATCTACATGGCCAACTTGCAAATGATTGTCTTCTTGATTGGCCAAGAAGAATGAGCATCATCATTGGAGCGGCTGATGGCTTATCGTACCTGCACCATGAGGCCAATCCTCATATAATACACAGAGACATAAAGGCAAGCAATGTGCTTCTAGACATTGATTTTCAAGCAAAAGTTGCTGATTTTGGATTTGCAAAGCTGATTCCGGAGGGTGTGAGTCATCTGACTACTAGAGTGAAAGGAACTCTGGGATATTTAGCTCCTGAATATGCTATGTGGGGAAAAGTTTCAGAAAGTTGTGATGTTTATAGCTTTGATCCAAAGTTGAAGGGCAAGTTCGACCGCGAACAAGTGAAGTCCACTATCATGATTGCGATGAAATGCACCGATAACAGCCCCGAGAATCGACCCACCATGAAAGAAGTAGTGGATTGGCTTAAGGGGGGAATGGGAACAAGGAAGAAAGATTTAACAAATGTGGGAGGCATCGAGGATGATGAAAATGAAGAAAACGACGGAAATGATACCGATTTTGAAGGGTACGAGATGGAGGTTTCTGATACCAAAAAGAATATAACAACGGCTAAATCACAAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

357

Amino Acids

39.89

Weight (kDa)

5.88

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 261	6.7e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 262	7.6e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28620
malus_domestica	MD00G1002700.v1.1 MD01G1191900.v1.1
prunus_persica	Prupe.2G286200_v2.0.a1
pyrus_communis	pycom01g20300 pycom07g23870
rosa_chinensis	RchiOBHm_Chr1g0376081
rosa_multiflora	Rmu_ssc0000116.1_g000028
rosa_roxburghii	Rroxscaffold_4G00282400
rosa_rugosa	Rorug01G0393800
rosa_samantha	Rh1AG405200 Rh1BG368800 Rh1DG398700
rosa_wichuraiana	Rw1G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	570
AccBSI	CCGCTC	2 cut(s)	104, 542
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	816
AccIII	TCCGGA	1 cut(s)	676
AciI	CCGC	6 cut(s)	65, 68, 104, 347, 542, 814
AclWI	GGATC	4 cut(s)	41, 103, 138, 782
AcoI	YGGCCR	2 cut(s)	481, 512
AcsI	RAATTY	1 cut(s)	385
AfaI	GTAC	2 cut(s)	560, 1013
AfiI	CCNNNNNNNGG	3 cut(s)	56, 127, 193
AflII	CTTAAG	1 cut(s)	908
AgsI	TTSAA	3 cut(s)	638, 799, 1007
AjnI	CCWGG	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	4 cut(s)	199, 670, 731, 783
AluI	AGCT	4 cut(s)	199, 670, 731, 783
Alw26I	GTCTC	3 cut(s)	134, 370, 591
AlwI	GGATC	4 cut(s)	41, 103, 138, 782
Ama87I	CYCGRG	2 cut(s)	112, 869
Aor13HI	TCCGGA	1 cut(s)	676
AoxI	GGCC	6 cut(s)	12, 31, 330, 481, 512, 573
ApeKI	GCWGC	2 cut(s)	62, 397
ApoI	RAATTY	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	757
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	12
AsuC2I	CCSGG	4 cut(s)	35, 113, 114, 122
AsuHPI	GGTGA	5 cut(s)	163, 254, 385, 431, 460
AvaI	CYCGRG	2 cut(s)	112, 869
BalI	TGGCCA	2 cut(s)	483, 514
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BbsI	GAAGAC	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	74, 384
BccI	CCATC	4 cut(s)	331, 480, 542, 1012
BceAI	ACGGC	1 cut(s)	1068
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	465
BcnI	CCSGG	4 cut(s)	35, 113, 114, 122
BcoDI	GTCTC	3 cut(s)	134, 370, 591
BfaI	CTAG	4 cut(s)	93, 365, 623, 702
BfrI	CTTAAG	1 cut(s)	908
BfuAI	ACCTGC	1 cut(s)	570
BglI	GCCNNNNNGGC	1 cut(s)	39
BisI	GCNGC	5 cut(s)	63, 66, 105, 398, 543
BlsI	GCNGC	5 cut(s)	64, 67, 106, 399, 544
Bme1390I	CCNGG	5 cut(s)	35, 113, 114, 122, 148
BmeT110I	CYCGRG	2 cut(s)	112, 869
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	5 cut(s)	35, 113, 114, 122, 148
BmsI	GCATC	2 cut(s)	537, 966
BpiI	GAAGAC	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	4 cut(s)	35, 113, 114, 122
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	6 cut(s)	34, 112, 113, 146, 147, 173
BsaWI	WCCGGW	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 127, 193
Bse118I	RCCGGY	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	619
BseAI	TCCGGA	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	6 cut(s)	34, 112, 113, 146, 147, 173
BseGI	GGATG	1 cut(s)	970
BseLI	CCNNNNNNNGG	3 cut(s)	56, 127, 193
BseMI	GCAATG	1 cut(s)	619
BseRI	GAGGAG	2 cut(s)	101, 114
BseXI	GCAGC	2 cut(s)	74, 384
BsgI	GTGCAG	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	816
Bsh1285I	CGRYCG	2 cut(s)	19, 814
BshFI	GGCC	6 cut(s)	14, 33, 332, 483, 514, 575
BsiEI	CGRYCG	2 cut(s)	19, 814
BsiHKCI	CYCGRG	2 cut(s)	112, 869
BsiSI	CCGG	6 cut(s)	15, 34, 113, 121, 414, 677
BslI	CCNNNNNNNGG	3 cut(s)	56, 127, 193
BsmAI	GTCTC	3 cut(s)	134, 370, 591
BsnI	GGCC	6 cut(s)	14, 33, 332, 483, 514, 575
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	2 cut(s)	112, 869
Bsp13I	TCCGGA	1 cut(s)	676
Bsp143I	GATC	6 cut(s)	46, 108, 130, 237, 465, 787
BspACI	CCGC	6 cut(s)	65, 68, 104, 347, 542, 814
BspANI	GGCC	6 cut(s)	14, 33, 332, 483, 514, 575
BspEI	TCCGGA	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	816
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	1 cut(s)	119
BspMI	ACCTGC	1 cut(s)	570
BspPI	GGATC	4 cut(s)	41, 103, 138, 782
BspTI	CTTAAG	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	134
BsrBI	CCGCTC	2 cut(s)	104, 542
BsrDI	GCAATG	1 cut(s)	619
BsrFI	RCCGGY	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	6 cut(s)	34, 112, 113, 146, 147, 173
BssMI	GATC	6 cut(s)	46, 108, 130, 237, 465, 787
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	908
BstAPI	GCANNNNNTGC	1 cut(s)	647
BstC8I	GCNNGC	1 cut(s)	610
BstEII	GGTNACC	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	970
BstFNI	CGCG	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	6 cut(s)	49, 111, 133, 240, 468, 790
BstMAI	GTCTC	3 cut(s)	134, 370, 591
BstMBI	GATC	6 cut(s)	46, 108, 130, 237, 465, 787
BstMCI	CGRYCG	2 cut(s)	19, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 647
BstNI	CCWGG	1 cut(s)	148
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	5 cut(s)	33, 111, 112, 120, 146
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	2 cut(s)	74, 384
BstV2I	GAAGAC	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	479
BsuRI	GGCC	6 cut(s)	14, 33, 332, 483, 514, 575
BtgZI	GCGATG	1 cut(s)	860
BtsCI	GGATG	1 cut(s)	970
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	570
Cac8I	GCNNGC	1 cut(s)	610
CciI	TCATGA	1 cut(s)	837
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	12
Cfr9I	CCCGGG	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	559, 1012
CviAII	CATG	8 cut(s)	51, 227, 319, 448, 479, 569, 838, 886
CviQI	GTAC	2 cut(s)	559, 1012
DpnI	GATC	6 cut(s)	48, 110, 132, 239, 467, 789
DpnII	GATC	6 cut(s)	46, 108, 130, 237, 465, 787
EaeI	YGGCCR	2 cut(s)	481, 512
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	112, 869
Eco91I	GGTNACC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	8 cut(s)	54, 230, 322, 451, 482, 572, 841, 889
FatI	CATG	8 cut(s)	50, 226, 318, 447, 478, 568, 837, 885
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	5 cut(s)	63, 66, 105, 398, 543
FokI	GGATG	1 cut(s)	977
Fsp4HI	GCNGC	5 cut(s)	63, 66, 105, 398, 543
FspBI	CTAG	4 cut(s)	93, 365, 623, 702
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	5 cut(s)	63, 66, 105, 398, 543
HaeIII	GGCC	6 cut(s)	14, 33, 332, 483, 514, 575
HapII	CCGG	6 cut(s)	15, 34, 113, 121, 414, 677
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	8 cut(s)	54, 230, 322, 451, 482, 572, 841, 889
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	4 cut(s)	405, 673, 688, 874
HpaII	CCGG	6 cut(s)	15, 34, 113, 121, 414, 677
HphI	GGTGA	5 cut(s)	163, 254, 385, 431, 460
Hpy166II	GTNNAC	2 cut(s)	25, 831
Hpy188I	TCNGA	3 cut(s)	696, 763, 1030
Hpy188III	TCNNGA	5 cut(s)	506, 623, 677, 734, 838
Hpy8I	GTNNAC	2 cut(s)	25, 831
Hpy99I	CGWCG	2 cut(s)	29, 989
HpyAV	CCTTC	3 cut(s)	23, 793, 1001
HpyCH4V	TGCA	4 cut(s)	491, 565, 665, 855
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 647
Hsp92II	CATG	8 cut(s)	54, 230, 322, 451, 482, 572, 841, 889
HspAI	GCGC	1 cut(s)	324
Kpn2I	TCCGGA	1 cut(s)	676
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	6 cut(s)	46, 108, 130, 237, 465, 787
LmnI	GCTCC	5 cut(s)	101, 117, 196, 539, 736
Lsp1109I	GCAGC	2 cut(s)	74, 384
LweI	GCATC	2 cut(s)	537, 966
MaeI	CTAG	4 cut(s)	93, 365, 623, 702
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	6 cut(s)	48, 110, 132, 239, 467, 789
MbiI	CCGCTC	2 cut(s)	104, 542
MboI	GATC	6 cut(s)	46, 108, 130, 237, 465, 787
MboII	GAAGA	6 cut(s)	137, 194, 494, 531, 943, 989
MlsI	TGGCCA	2 cut(s)	483, 514
MluCI	AATT	1 cut(s)	385
MluNI	TGGCCA	2 cut(s)	483, 514
MlyI	GAGTC	1 cut(s)	697
Mox20I	TGGCCA	2 cut(s)	483, 514
MroI	TCCGGA	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	757
MscI	TGGCCA	2 cut(s)	483, 514
MseI	TTAA	2 cut(s)	909, 941
MslI	CAYNNNNRTG	2 cut(s)	477, 836
Msp20I	TGGCCA	2 cut(s)	483, 514
MspA1I	CMGCKG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	908
MspI	CCGG	6 cut(s)	15, 34, 113, 121, 414, 677
MspR9I	CCNGG	5 cut(s)	35, 113, 114, 122, 148
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	2 cut(s)	39, 647
NciI	CCSGG	4 cut(s)	35, 113, 114, 122
NdeII	GATC	6 cut(s)	46, 108, 130, 237, 465, 787
NlaIII	CATG	8 cut(s)	54, 230, 322, 451, 482, 572, 841, 889
NlaIV	GGNNCC	1 cut(s)	119
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	837
PasI	CCCWGGG	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	757
PfeI	GAWTC	3 cut(s)	405, 673, 874
PkrI	GCNGC	5 cut(s)	64, 67, 106, 399, 544
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	146
PspEI	GGTNACC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	12
RsaI	GTAC	2 cut(s)	560, 1013
RsaNI	GTAC	2 cut(s)	559, 1012
RseI	CAYNNNNRTG	2 cut(s)	477, 836
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	909, 941
SatI	GCNGC	5 cut(s)	63, 66, 105, 398, 543
Sau3AI	GATC	6 cut(s)	46, 108, 130, 237, 465, 787
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	5 cut(s)	35, 113, 114, 122, 148
SetI	ASST	8 cut(s)	201, 253, 421, 564, 672, 733, 785, 1026
SfaNI	GCATC	2 cut(s)	537, 966
SmaI	CCCGGG	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	477, 836
SmlI	CTYRAG	2 cut(s)	191, 908
SmoI	CTYRAG	2 cut(s)	191, 908
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	6 cut(s)	65, 68, 104, 347, 542, 814
SspMI	CTAG	4 cut(s)	93, 365, 623, 702
StyD4I	CCNGG	5 cut(s)	33, 111, 112, 120, 146
StyI	CCWWGG	1 cut(s)	173
TaqI	TCGA	6 cut(s)	24, 45, 274, 810, 877, 960
TasI	AATT	1 cut(s)	385
TauI	GCSGC	3 cut(s)	68, 107, 545
TfiI	GAWTC	3 cut(s)	405, 673, 874
Tru1I	TTAA	2 cut(s)	909, 941
Tru9I	TTAA	2 cut(s)	909, 941
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	62, 397
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	6 cut(s)	436, 438, 863, 902, 984, 990
TspGWI	ACGGA	2 cut(s)	98, 1002
TspMI	CCCGGG	1 cut(s)	112
TspRI	CASTG	1 cut(s)	306
Vha464I	CTTAAG	1 cut(s)	908
XapI	RAATTY	1 cut(s)	385
XbaI	TCTAGA	1 cut(s)	622
XmaI	CCCGGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	757
XspI	CTAG	4 cut(s)	93, 365, 623, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.