Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016925

Physical Location & Seq

Genomic Coordinates Forward (+)

24654992 .. 24657104

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCCCTTGAACTGCTTTTGTTGTGCCGCCGAAGAAGATCGAGAACCAGCTGAGACCAGGGTTCACAAGAACAGGGATTACCCGTGGGAAATATATTCTCTCAAGGAGCTTCTTCATGCAACGAACAGCTTCCACCATGATAACAAAATTGGAGAAGGAGGGTTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCGTCGAGATTGCGGTGAAACGATTAAAGACAATGAGTCCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTTGAAATACTTGGAAGGGTGAGACACAGAAATCTGTTAGGCCTGCGGGGATTTTATGCTGGAGGTGATGAAAGGCTCATAGTGTACGATTTTATGCCTAATCATAGCTTGATCACCCATTTACATGGCCAACTTGCAGCAGATTGTCTTCTTGATTGGTCAAGAAGACTGAGCATCGCCAAAAGGTACCTGCACCATGAGGCCAATCCTCATATAATTCACAGAGACATAAAGGCCAGTAATGTGCTTCTAGATTCTGAATTCGAAGCAAAAGTTGCTGATTTCGGATTTGCAAAGCTGATTCCGGACGGTGTAACTCATCTGACTACTAGAGTAAAGGGAACTCTTGGATATCTAGCTCCTGAATATGCCATGTGGGGGAAGGTTTCTGAGAGTTGTGATGTTTATAGCTTTGGGATTTTGCTCCTAGAAATAATTAGTGGAAAAAAGCCGATAGAAAAACTACCAGGAGGAGTGAAACGTGACATTGTTCAATGGGTCACCCCCTATGTCCAAAAGGGTGCATTTAATCAAATTGCCGATCCAAGGTTGAAGGGCAAGTTTGATAAAGTACAAGTGAAATCGACGGTCCTGATTGCTATGAAATGCACCGATAATAGCCCCGACAATCGTCCCACCATGATAGAGGTGGTGGATTGGCTTAAGGGAGGTATAGGAAGAAGGAAAAAGGAGATCACAAAAGTGGAGGACACTGAGGATGATGAAGACGACGAAGTTTACGATGACATTGATACTCAGCATGAAGTTTATGGTGTGGAGCTATCCGATGCAAGAGAGAATATTACAAGGGCAAGACCACAAAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

365

Amino Acids

41.42

Weight (kDa)

6.41

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	44 - 306	7.6e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	46 - 307	5.1e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28620
malus_domestica	MD00G1002700.v1.1 MD01G1191900.v1.1
prunus_persica	Prupe.2G286200_v2.0.a1
pyrus_communis	pycom01g20300 pycom07g23870
rosa_chinensis	RchiOBHm_Chr1g0376081
rosa_multiflora	Rmu_ssc0000116.1_g000028
rosa_roxburghii	Rroxscaffold_4G00282400
rosa_rugosa	Rorug01G0393800
rosa_samantha	Rh1AG405200 Rh1BG368800 Rh1DG398700
rosa_wichuraiana	Rw1G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	462
Acc65I	GGTACC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	450
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	3 cut(s)	27, 209, 310
AclWI	GGATC	1 cut(s)	800
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	198
AfaI	GTAC	3 cut(s)	350, 452, 837
AfiI	CCNNNNNNNGG	2 cut(s)	642, 810
AflII	CTTAAG	1 cut(s)	926
AgsI	TTSAA	4 cut(s)	10, 269, 758, 817
AhdI	GACNNNNNGTC	1 cut(s)	231
AjnI	CCWGG	2 cut(s)	56, 730
AjuI	GAANNNNNNNTTGG	4 cut(s)	147, 160, 179, 192
AleI	CACNNNNGTG	1 cut(s)	965
AluBI	AGCT	8 cut(s)	50, 109, 129, 372, 562, 623, 675, 1045
AluI	AGCT	8 cut(s)	50, 109, 129, 372, 562, 623, 675, 1045
Alw26I	GTCTC	3 cut(s)	47, 280, 483
AlwI	GGATC	1 cut(s)	800
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	4 cut(s)	304, 391, 465, 498
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	128
Asp718I	GGTACC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	853
AsuHPI	GGTGA	5 cut(s)	223, 295, 341, 370, 757
AsuII	TTCGAA	1 cut(s)	528
AvaII	GGWCC	1 cut(s)	853
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	450
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BbsI	GAAGAC	3 cut(s)	404, 436, 996
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	58, 732
BclI	TGATCA	1 cut(s)	375
BcoDI	GTCTC	3 cut(s)	47, 280, 483
BfaI	CTAG	4 cut(s)	515, 594, 620, 692
BfrI	CTTAAG	1 cut(s)	926
BfuAI	ACCTGC	1 cut(s)	462
BisI	GCNGC	2 cut(s)	27, 402
BlsI	GCNGC	2 cut(s)	28, 403
Bme1390I	CCNGG	2 cut(s)	58, 732
Bme18I	GGWCC	1 cut(s)	853
BmeRI	GACNNNNNGTC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	58, 732
BmsI	GCATC	2 cut(s)	447, 1042
BoxI	GACNNNNGTC	1 cut(s)	894
BpiI	GAAGAC	3 cut(s)	404, 436, 996
BpmI	CTGGAG	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	528
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	57, 83, 809
BsaWI	WCCGGW	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	2 cut(s)	642, 810
Bse1I	ACTGG	1 cut(s)	501
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	58, 732
BseDI	CCNNGG	3 cut(s)	57, 83, 809
BseGI	GGATG	1 cut(s)	988
BseLI	CCNNNNNNNGG	2 cut(s)	642, 810
BseMII	CTCAG	5 cut(s)	42, 425, 645, 969, 1034
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	1 cut(s)	750
BseXI	GCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	440
BshFI	GGCC	4 cut(s)	306, 393, 467, 500
BshNI	GGYRCC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	882
BslI	CCNNNNNNNGG	2 cut(s)	642, 810
BsmAI	GTCTC	3 cut(s)	47, 280, 483
BsmFI	GGGAC	1 cut(s)	882
BsnI	GGCC	4 cut(s)	306, 393, 467, 500
Bso31I	GGTCTC	1 cut(s)	47
Bsp119I	TTCGAA	1 cut(s)	528
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	4 cut(s)	37, 375, 805, 957
BspACI	CCGC	3 cut(s)	27, 209, 310
BspANI	GGCC	4 cut(s)	306, 393, 467, 500
BspCNI	CTCAG	5 cut(s)	43, 426, 646, 970, 1033
BspEI	TCCGGA	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	452
BspMI	ACCTGC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	800
BspT104I	TTCGAA	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	450
BspTI	CTTAAG	1 cut(s)	926
BspTNI	GGTCTC	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	3 cut(s)	57, 83, 809
BssMI	GATC	4 cut(s)	37, 375, 805, 957
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	809
Bst2UI	CCWGG	2 cut(s)	58, 732
Bst4CI	ACNGT	2 cut(s)	575, 853
BstACI	GRCGYC	1 cut(s)	198
BstAFI	CTTAAG	1 cut(s)	926
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	5 cut(s)	51, 434, 654, 978, 1020
BstDSI	CCRYGG	1 cut(s)	83
BstEII	GGTNACC	1 cut(s)	763
BstF5I	GGATG	1 cut(s)	988
BstKTI	GATC	4 cut(s)	40, 378, 808, 960
BstMAI	GTCTC	3 cut(s)	47, 280, 483
BstMBI	GATC	4 cut(s)	37, 375, 805, 957
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	2 cut(s)	58, 732
BstPAI	GACNNNNGTC	1 cut(s)	894
BstPI	GGTNACC	1 cut(s)	763
BstSCI	CCNGG	2 cut(s)	56, 730
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	3 cut(s)	404, 436, 996
BstXI	CCANNNNNNTGG	1 cut(s)	389
BsuRI	GGCC	4 cut(s)	306, 393, 467, 500
BtgI	CCRYGG	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	988
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	2 cut(s)	264, 975
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	853
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	3 cut(s)	349, 451, 836
CviAII	CATG	7 cut(s)	116, 137, 389, 461, 637, 904, 1025
CviQI	GTAC	3 cut(s)	349, 451, 836
DdeI	CTNAG	5 cut(s)	51, 434, 654, 978, 1020
DpnI	GATC	4 cut(s)	39, 377, 807, 959
DpnII	GATC	4 cut(s)	37, 375, 805, 957
DriI	GACNNNNNGTC	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	391
Eam1105I	GACNNNNNGTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	809
Eco147I	AGGCCT	1 cut(s)	306
Eco31I	GGTCTC	1 cut(s)	47
Eco32I	GATATC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	853
Eco91I	GGTNACC	1 cut(s)	763
EcoO65I	GGTNACC	1 cut(s)	763
EcoRI	GAATTC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	56, 730
EcoRV	GATATC	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	809
ErhI	CCWWGG	1 cut(s)	809
FaeI	CATG	7 cut(s)	119, 140, 392, 464, 640, 907, 1028
FaqI	GGGAC	1 cut(s)	882
FatI	CATG	7 cut(s)	115, 136, 388, 460, 636, 903, 1024
FauI	CCCGC	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	27, 402
FokI	GGATG	1 cut(s)	995
Fsp4HI	GCNGC	2 cut(s)	27, 402
FspBI	CTAG	4 cut(s)	515, 594, 620, 692
GluI	GCNGC	2 cut(s)	27, 402
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	4 cut(s)	306, 393, 467, 500
HapII	CCGG	1 cut(s)	569
HgaI	GACGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	7 cut(s)	119, 140, 392, 464, 640, 907, 1028
HinfI	GANTC	3 cut(s)	232, 518, 565
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	5 cut(s)	223, 295, 341, 370, 757
Hpy166II	GTNNAC	3 cut(s)	64, 349, 1003
Hpy188I	TCNGA	5 cut(s)	523, 551, 588, 655, 1051
Hpy188III	TCNNGA	8 cut(s)	41, 202, 416, 426, 515, 569, 626, 856
Hpy8I	GTNNAC	3 cut(s)	64, 349, 1003
Hpy99I	CGWCG	3 cut(s)	203, 853, 998
HpyAV	CCTTC	5 cut(s)	149, 273, 640, 811, 939
HpyCH4III	ACNGT	2 cut(s)	575, 853
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	8 cut(s)	119, 257, 401, 457, 557, 788, 873, 1055
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	5 cut(s)	51, 434, 654, 978, 1020
HpySE526I	ACGT	1 cut(s)	745
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	7 cut(s)	119, 140, 392, 464, 640, 907, 1028
Kpn2I	TCCGGA	1 cut(s)	568
KpnI	GGTACC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	4 cut(s)	37, 375, 805, 957
LmnI	GCTCC	4 cut(s)	106, 628, 693, 1042
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	2 cut(s)	447, 1042
MaeI	CTAG	4 cut(s)	515, 594, 620, 692
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	3 cut(s)	577, 746, 763
MalI	GATC	4 cut(s)	39, 377, 807, 959
MboI	GATC	4 cut(s)	37, 375, 805, 957
MboII	GAAGA	7 cut(s)	44, 47, 104, 404, 441, 954, 1001
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	5 cut(s)	147, 480, 524, 699, 798
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	9 cut(s)	152, 320, 457, 483, 728, 904, 926, 964, 973
Mox20I	TGGCCA	1 cut(s)	393
MroI	TCCGGA	1 cut(s)	568
MroXI	GAANNNNTTC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	3 cut(s)	221, 792, 927
MslI	CAYNNNNRTG	2 cut(s)	387, 965
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	50
MspCI	CTTAAG	1 cut(s)	926
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	2 cut(s)	58, 732
MvaI	CCWGG	2 cut(s)	58, 732
MwoI	GCNNNNNNNGC	1 cut(s)	539
NdeII	GATC	4 cut(s)	37, 375, 805, 957
NlaIII	CATG	7 cut(s)	119, 140, 392, 464, 640, 907, 1028
NlaIV	GGNNCC	1 cut(s)	452
NmuCI	GTSAC	2 cut(s)	746, 763
NspV	TTCGAA	1 cut(s)	528
OliI	CACNNNNGTG	1 cut(s)	965
PceI	AGGCCT	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	1002
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	518, 565
PkrI	GCNGC	2 cut(s)	28, 403
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PshAI	GACNNNNGTC	1 cut(s)	894
Psp6I	CCWGG	2 cut(s)	56, 730
PspEI	GGTNACC	1 cut(s)	763
PspGI	CCWGG	2 cut(s)	56, 730
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	1 cut(s)	853
PsrI	GAACNNNNNNTAC	2 cut(s)	62, 94
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	3 cut(s)	350, 452, 837
RsaNI	GTAC	3 cut(s)	349, 451, 836
RseI	CAYNNNNRTG	2 cut(s)	387, 965
SaqAI	TTAA	3 cut(s)	221, 792, 927
SatI	GCNGC	2 cut(s)	27, 402
Sau3AI	GATC	4 cut(s)	37, 375, 805, 957
Sau96I	GGNCC	1 cut(s)	853
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	58, 732
SfaNI	GCATC	2 cut(s)	447, 1042
SfuI	TTCGAA	1 cut(s)	528
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	2 cut(s)	387, 965
SmlI	CTYRAG	2 cut(s)	101, 926
SmoI	CTYRAG	2 cut(s)	101, 926
Sse9I	AATT	5 cut(s)	147, 480, 524, 699, 798
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	3 cut(s)	27, 209, 310
SspI	AATATT	1 cut(s)	1066
SspMI	CTAG	4 cut(s)	515, 594, 620, 692
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	56, 730
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	2 cut(s)	575, 853
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	5 cut(s)	40, 184, 201, 528, 848
TasI	AATT	5 cut(s)	147, 480, 524, 699, 798
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	518, 565
Tru1I	TTAA	3 cut(s)	221, 792, 927
Tru9I	TTAA	3 cut(s)	221, 792, 927
TscAI	CASTG	2 cut(s)	264, 982
TseFI	GTSAC	2 cut(s)	746, 763
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	2 cut(s)	746, 763
TspDTI	ATGAA	5 cut(s)	104, 348, 881, 1002, 1041
TspRI	CASTG	2 cut(s)	264, 982
Vha464I	CTTAAG	1 cut(s)	926
VpaK11BI	GGWCC	1 cut(s)	853
XapI	RAATTY	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	910
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	4 cut(s)	515, 594, 620, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.