Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0016925

Physical Location & Seq

Genomic Coordinates Forward (+)

63781576 .. 63783802

Gene Structure 2227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCCCTGGAACTGCTTTTGTTGCGTCTCTCAGGAAGAGGATCAGCCAGAGACCCCCAGGGTGACCAAGAATAGAGATTACCCTTGGGATATATACCCTCTCAAAGAGCTTCTTCATGCAACAAACAACTTCCACCATGAAAACAAGATCGGTGAGGGAGGTTTTGGAAGTGTTTATTGGGGTCGAACAAGCAAAGGCGTGGAGATAGCAGTGAAACGACTAAAGACCATGAGCGCAAAGGCTGAGATGGAGTTTGCGGTGGAAGTTGAGATACTAGGGAGGGTGAGACATAGAAATTTGTTAGGGCTGCGTGGATTCTACGCCGGAGGTGATGAAAGACTAATAGTGTATGATTTCATGCCTAATCATAGCCTGATCACCCATTTACATGGCGAACTTGCAAATGATTGTCTTCTTGATTGGCCAAGAAGAATGAGCATCATCATTGGAGCGGCTGATGGCTTATCGTACCTGCACCATGAGGCCAATCCTCATATAATACACAGAGACATAAAGGCAAGCAATGTGCTTCTAGACATTGATTTTCAAGCAAAAGTTGCTGATTTTGGATTTGCAAAGCTGATTCCGGAGGGTGTGAGTCATCTGACTACTAGAGTGAAAGGAACTCTTGGATATTTAGCTCCTGAATATGCTATGTGGGGAAAAGTTTCAGAAAGTTGTGATGTTTATAGCTTTGGTATCTTGCTTTTAGAAATAATTAGCGGAAGAAAGCCAATAGAGAAACTCCCTGGCGGAGTGAAACGTGACATTGTGCAATGGGCAACCCCTTATGTCCAAAAGGGTGCATATAATCACATTGCAGATCCAAAGTTGAAGGGCAAGTTCGACCGCGAACAAGTGAAGTCCACTATCATGATTGCGATGAAATGTACCGATAACAGCCCCGAGAATCGACCCACAATGAAAGAAGTAGTGGATTGGCTTAAGGGGGGAATGGGAACAAGGAAGAAAGGTTTAACAAATGTGGGAGGCATCGAGGATGATGAAAATGAAGAAAACGACGGAAATGATACCGATTTTGAAGGGTACGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

352

Amino Acids

39.72

Weight (kDa)

5.93

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	44 - 312	1.2e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	46 - 313	3e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28620
malus_domestica	MD00G1002700.v1.1 MD01G1191900.v1.1
prunus_persica	Prupe.2G286200_v2.0.a1
pyrus_communis	pycom01g20300 pycom07g23870
rosa_chinensis	RchiOBHm_Chr1g0376081
rosa_multiflora	Rmu_ssc0000116.1_g000028
rosa_roxburghii	Rroxscaffold_4G00282400
rosa_rugosa	Rorug01G0393800
rosa_samantha	Rh1AG405200 Rh1BG368800 Rh1DG398700
rosa_wichuraiana	Rw1G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	480
AccBSI	CCGCTC	1 cut(s)	452
AccII	CGCG	1 cut(s)	852
AccIII	TCCGGA	1 cut(s)	586
AciI	CCGC	5 cut(s)	257, 452, 723, 753, 850
AclWI	GGATC	2 cut(s)	48, 818
AcoI	YGGCCR	1 cut(s)	422
AcsI	RAATTY	1 cut(s)	295
AfaI	GTAC	3 cut(s)	470, 892, 1049
AflII	CTTAAG	1 cut(s)	944
AgsI	TTSAA	3 cut(s)	548, 835, 1043
AjnI	CCWGG	3 cut(s)	5, 56, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	160, 192
AluBI	AGCT	4 cut(s)	109, 580, 641, 693
AluI	AGCT	4 cut(s)	109, 580, 641, 693
Alw26I	GTCTC	4 cut(s)	31, 44, 280, 501
AlwI	GGATC	2 cut(s)	48, 818
Ama87I	CYCGRG	1 cut(s)	905
Aor13HI	TCCGGA	1 cut(s)	586
AoxI	GGCC	2 cut(s)	422, 483
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	295
Asp700I	GAANNNNTTC	1 cut(s)	667
AspLEI	GCGC	1 cut(s)	236
AsuHPI	GGTGA	5 cut(s)	73, 164, 295, 341, 370
AvaI	CYCGRG	1 cut(s)	905
BalI	TGGCCA	1 cut(s)	424
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BbsI	GAAGAC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	241, 452
BciT130I	CCWGG	3 cut(s)	7, 58, 750
BclI	TGATCA	1 cut(s)	375
BcoDI	GTCTC	4 cut(s)	31, 44, 280, 501
BfaI	CTAG	3 cut(s)	275, 533, 612
BfrI	CTTAAG	1 cut(s)	944
BfuAI	ACCTGC	1 cut(s)	480
BisI	GCNGC	2 cut(s)	308, 453
BlsI	GCNGC	2 cut(s)	309, 454
Bme1390I	CCNGG	3 cut(s)	7, 58, 750
BmeT110I	CYCGRG	1 cut(s)	905
BmrFI	CCNGG	3 cut(s)	7, 58, 750
BmsI	GCATC	2 cut(s)	447, 1002
BpiI	GAAGAC	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	5 cut(s)	5, 56, 57, 83, 748
BsaWI	WCCGGW	1 cut(s)	586
Bse3DI	GCAATG	3 cut(s)	529, 782, 816
BseAI	TCCGGA	1 cut(s)	586
BseBI	CCWGG	3 cut(s)	7, 58, 750
BseDI	CCNNGG	5 cut(s)	5, 56, 57, 83, 748
BseGI	GGATG	1 cut(s)	1006
BseMI	GCAATG	3 cut(s)	529, 782, 816
BseMII	CTCAG	2 cut(s)	44, 234
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	1 cut(s)	852
Bsh1285I	CGRYCG	1 cut(s)	850
BshFI	GGCC	2 cut(s)	424, 485
BsiEI	CGRYCG	1 cut(s)	850
BsiHKCI	CYCGRG	1 cut(s)	905
BsiSI	CCGG	2 cut(s)	324, 587
BsmAI	GTCTC	4 cut(s)	31, 44, 280, 501
BsmBI	CGTCTC	1 cut(s)	31
BsnI	GGCC	2 cut(s)	424, 485
Bso31I	GGTCTC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	905
Bsp13I	TCCGGA	1 cut(s)	586
Bsp143I	GATC	4 cut(s)	40, 147, 375, 823
BspACI	CCGC	5 cut(s)	257, 452, 723, 753, 850
BspANI	GGCC	2 cut(s)	424, 485
BspCNI	CTCAG	2 cut(s)	43, 235
BspEI	TCCGGA	1 cut(s)	586
BspFNI	CGCG	1 cut(s)	852
BspHI	TCATGA	1 cut(s)	873
BspMI	ACCTGC	1 cut(s)	480
BspPI	GGATC	2 cut(s)	48, 818
BspTI	CTTAAG	1 cut(s)	944
BspTNI	GGTCTC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	452
BsrDI	GCAATG	3 cut(s)	529, 782, 816
BssECI	CCNNGG	5 cut(s)	5, 56, 57, 83, 748
BssMI	GATC	4 cut(s)	40, 147, 375, 823
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	3 cut(s)	7, 58, 750
Bst6I	CTCTTC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	944
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	2 cut(s)	30, 243
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	1006
BstFNI	CGCG	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	4 cut(s)	43, 150, 378, 826
BstMAI	GTCTC	4 cut(s)	31, 44, 280, 501
BstMBI	GATC	4 cut(s)	40, 147, 375, 823
BstMCI	CGRYCG	1 cut(s)	850
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 557
BstNI	CCWGG	3 cut(s)	7, 58, 750
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	3 cut(s)	5, 56, 748
BstUI	CGCG	1 cut(s)	852
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	823
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	823
BsuRI	GGCC	2 cut(s)	424, 485
BtgZI	GCGATG	1 cut(s)	896
BtsCI	GGATG	1 cut(s)	1006
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	520
CciI	TCATGA	1 cut(s)	873
CfoI	GCGC	1 cut(s)	236
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	3 cut(s)	469, 891, 1048
CviAII	CATG	7 cut(s)	116, 137, 229, 358, 389, 479, 874
CviQI	GTAC	3 cut(s)	469, 891, 1048
DdeI	CTNAG	2 cut(s)	30, 243
DpnI	GATC	4 cut(s)	42, 149, 377, 825
DpnII	GATC	4 cut(s)	40, 147, 375, 823
EaeI	YGGCCR	1 cut(s)	422
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	768
Eco130I	CCWWGG	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	905
Eco91I	GGTNACC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	61
EcoRII	CCWGG	3 cut(s)	5, 56, 748
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	7 cut(s)	119, 140, 232, 361, 392, 482, 877
FalI	AAGNNNNNCTT	4 cut(s)	96, 128, 612, 644
FatI	CATG	7 cut(s)	115, 136, 228, 357, 388, 478, 873
FbaI	TGATCA	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	308, 453
FokI	GGATG	1 cut(s)	1013
Fsp4HI	GCNGC	2 cut(s)	308, 453
FspBI	CTAG	3 cut(s)	275, 533, 612
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	308, 453
HaeIII	GGCC	2 cut(s)	424, 485
HapII	CCGG	2 cut(s)	324, 587
HgaI	GACGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	7 cut(s)	119, 140, 232, 361, 392, 482, 877
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	4 cut(s)	315, 583, 598, 910
HpaII	CCGG	2 cut(s)	324, 587
HphI	GGTGA	5 cut(s)	73, 164, 295, 341, 370
Hpy166II	GTNNAC	1 cut(s)	867
Hpy188I	TCNGA	2 cut(s)	606, 673
Hpy188III	TCNNGA	6 cut(s)	32, 416, 533, 587, 644, 874
Hpy8I	GTNNAC	1 cut(s)	867
Hpy99I	CGWCG	1 cut(s)	1025
HpyAV	CCTTC	2 cut(s)	829, 1037
HpyCH4IV	ACGT	1 cut(s)	763
HpyCH4V	TGCA	7 cut(s)	119, 401, 475, 575, 775, 806, 821
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 557
HpyF3I	CTNAG	2 cut(s)	30, 243
HpySE526I	ACGT	1 cut(s)	763
Hsp92II	CATG	7 cut(s)	119, 140, 232, 361, 392, 482, 877
HspAI	GCGC	1 cut(s)	234
Kpn2I	TCCGGA	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	375
Kzo9I	GATC	4 cut(s)	40, 147, 375, 823
LmnI	GCTCC	2 cut(s)	449, 646
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	2 cut(s)	447, 1002
MaeI	CTAG	3 cut(s)	275, 533, 612
MaeII	ACGT	1 cut(s)	763
MaeIII	GTNAC	2 cut(s)	61, 764
MalI	GATC	4 cut(s)	42, 149, 377, 825
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	4 cut(s)	40, 147, 375, 823
MboII	GAAGA	7 cut(s)	47, 104, 404, 441, 738, 979, 1025
MflI	RGATCY	1 cut(s)	823
MlsI	TGGCCA	1 cut(s)	424
MluCI	AATT	2 cut(s)	295, 717
MluNI	TGGCCA	1 cut(s)	424
MlyI	GAGTC	1 cut(s)	607
Mox20I	TGGCCA	1 cut(s)	424
MroI	TCCGGA	1 cut(s)	586
MroXI	GAANNNNTTC	1 cut(s)	667
MscI	TGGCCA	1 cut(s)	424
MseI	TTAA	2 cut(s)	945, 977
MslI	CAYNNNNRTG	2 cut(s)	387, 872
Msp20I	TGGCCA	1 cut(s)	424
MspCI	CTTAAG	1 cut(s)	944
MspI	CCGG	2 cut(s)	324, 587
MspR9I	CCNGG	3 cut(s)	7, 58, 750
MvaI	CCWGG	3 cut(s)	7, 58, 750
MvnI	CGCG	1 cut(s)	852
MwoI	GCNNNNNNNGC	2 cut(s)	21, 557
NdeII	GATC	4 cut(s)	40, 147, 375, 823
NlaIII	CATG	7 cut(s)	119, 140, 232, 361, 392, 482, 877
NmuCI	GTSAC	2 cut(s)	61, 764
PagI	TCATGA	1 cut(s)	873
PasI	CCCWGGG	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	3 cut(s)	315, 583, 910
PkrI	GCNGC	2 cut(s)	309, 454
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
Psp6I	CCWGG	3 cut(s)	5, 56, 748
PspEI	GGTNACC	1 cut(s)	61
PspGI	CCWGG	3 cut(s)	5, 56, 748
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	3 cut(s)	470, 892, 1049
RsaNI	GTAC	3 cut(s)	469, 891, 1048
RseI	CAYNNNNRTG	2 cut(s)	387, 872
SaqAI	TTAA	2 cut(s)	945, 977
SatI	GCNGC	2 cut(s)	308, 453
Sau3AI	GATC	4 cut(s)	40, 147, 375, 823
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	3 cut(s)	7, 58, 750
SetI	ASST	9 cut(s)	111, 163, 331, 474, 582, 643, 695, 766, 976
SfaNI	GCATC	2 cut(s)	447, 1002
SmiMI	CAYNNNNRTG	2 cut(s)	387, 872
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	2 cut(s)	295, 717
SsiI	CCGC	5 cut(s)	257, 452, 723, 753, 850
SspMI	CTAG	3 cut(s)	275, 533, 612
StyD4I	CCNGG	3 cut(s)	5, 56, 748
StyI	CCWWGG	1 cut(s)	83
TaiI	ACGT	1 cut(s)	766
TaqI	TCGA	4 cut(s)	184, 846, 913, 996
TasI	AATT	2 cut(s)	295, 717
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	3 cut(s)	315, 583, 910
Tru1I	TTAA	2 cut(s)	945, 977
Tru9I	TTAA	2 cut(s)	945, 977
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	2 cut(s)	61, 764
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	2 cut(s)	61, 764
TspDTI	ATGAA	8 cut(s)	104, 153, 346, 348, 899, 938, 1020, 1026
TspGWI	ACGGA	1 cut(s)	1038
TspRI	CASTG	1 cut(s)	216
Vha464I	CTTAAG	1 cut(s)	944
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	3 cut(s)	275, 533, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.