Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016925

Physical Location & Seq

Genomic Coordinates Forward (+)

29044795 .. 29047175

Gene Structure 2381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1191900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCCCTGGAACTGCTTTTGTTGCGTCGCCGAAGAAGATCAAGAACCAGCTCAGACCAGTATGGTTCACAAGAATAGGGATTATCCGTGGGAAATATATTCTCTCAAGGAGCTTCTTCATGCAACAAACAGCTTCCACGATGATAACAAAATTGGAGAAGGAGGGTTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGTGTTGAGATCGCGGTAAAACGATTAAAGACGATGAGTCCAAAAGCAGAGATGGAGTTTGCAGTGGAAGTTGAAATACTTGGAAGGGTGAGACACAGAAATTTGTTAGGCCTGCGGGGATTTTATGCCGGAGGTGATGAAAGGCTCATAGTGTACGATTTTATGCCTAATCATAGCTTGATCACCCATTTACATGGCAAACTTGCAGCAGATTGTCTTCTTGATTGGCCAAGAAGACTGAGCATTGCCATTGGATCAGCTGAAGGTTTATCGTACCTGCACCATGAGGCCAGTCCTCATATAATCCACAGAGACATAAAGGCCAGTAATGTGCTTCTAGATACTGAATTCGAAGCCAAAGTTGCTGATTTCGGATTTGCAAAGCTGATTCCGGACGGTGTAACTCATCTGACCACTAGGGTAAAGGGAACTCTTGGATACCTAGCTCCTGAATATGCCATGTGGGGGAAGGTTTCTGAGAGTTGTGATGTTTATAGCTTTGGGATTTTGCTCTTAGAAATAATTAGCGGAAAAAAGCCGATAGAAAAACTACCGGGCGGAGTGAAACGTGACATTGTTCAATGGGTCACCCCCTATGTCGAAAAGGGTGCATTTAATCAAATTGTTGATCCAAGGTTGAAGGGCAAGTTTGATAAAGAACAAGTGAAATCGACAGTCATAGTTGCCATGAAATGCACCGACAATAGCCCCGATAATCGTCCCACCATGATAGAAGTGGTGGATTGGCTTAAGGGAGGTCTAGGAAGAAGGAAAAAAGAGATCAGAAAAGTGGAGGACACTGAGGATGATCAAGACGAAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

341

Amino Acids

38.31

Weight (kDa)

6.2

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	45 - 313	1.1e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	48 - 314	1.2e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28620
malus_domestica	MD00G1002700.v1.1 MD01G1191900.v1.1
prunus_persica	Prupe.2G286200_v2.0.a1
pyrus_communis	pycom01g20300 pycom07g23870
rosa_chinensis	RchiOBHm_Chr1g0376081
rosa_multiflora	Rmu_ssc0000116.1_g000028
rosa_roxburghii	Rroxscaffold_4G00282400
rosa_rugosa	Rorug01G0393800
rosa_samantha	Rh1AG405200 Rh1BG368800 Rh1DG398700
rosa_wichuraiana	Rw1G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	483
AccII	CGCG	1 cut(s)	212
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	4 cut(s)	212, 313, 726, 756
AclWI	GGATC	2 cut(s)	460, 821
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	2 cut(s)	298, 545
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	2 cut(s)	353, 473
AfiI	CCNNNNNNNGG	1 cut(s)	663
AflII	CTTAAG	1 cut(s)	947
AgsI	TTSAA	3 cut(s)	272, 779, 838
AhdI	GACNNNNNGTC	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	5
AjuI	GAANNNNNNNTTGG	4 cut(s)	150, 163, 182, 195
AluBI	AGCT	8 cut(s)	50, 112, 132, 375, 458, 583, 644, 696
AluI	AGCT	8 cut(s)	50, 112, 132, 375, 458, 583, 644, 696
Alw26I	GTCTC	2 cut(s)	283, 504
AlwI	GGATC	2 cut(s)	460, 821
Aor13HI	TCCGGA	1 cut(s)	589
AoxI	GGCC	4 cut(s)	307, 425, 486, 519
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	298, 545
AsuC2I	CCSGG	1 cut(s)	753
AsuHPI	GGTGA	4 cut(s)	298, 344, 373, 778
AsuII	TTCGAA	1 cut(s)	549
BalI	TGGCCA	1 cut(s)	427
BarI	GAAGNNNNNNTAC	2 cut(s)	258, 290
BbsI	GAAGAC	2 cut(s)	407, 439
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	788, 822
BciT130I	CCWGG	1 cut(s)	7
BciVI	GTATCC	1 cut(s)	629
BclI	TGATCA	2 cut(s)	378, 1006
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	2 cut(s)	283, 504
BfaI	CTAG	4 cut(s)	536, 615, 641, 959
BfrI	CTTAAG	1 cut(s)	947
BfuAI	ACCTGC	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	629
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	7, 753
BmeRI	GACNNNNNGTC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	7, 753
BpiI	GAAGAC	2 cut(s)	407, 439
Bpu14I	TTCGAA	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	753
BsaJI	CCNNGG	3 cut(s)	5, 86, 830
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse1I	ACTGG	3 cut(s)	57, 489, 522
Bse3DI	GCAATG	1 cut(s)	441
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	3 cut(s)	5, 86, 830
BseGI	GGATG	1 cut(s)	1009
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	4 cut(s)	65, 428, 666, 990
BseNI	ACTGG	3 cut(s)	57, 489, 522
BseXI	GCAGC	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	4 cut(s)	309, 427, 488, 521
BsiSI	CCGG	3 cut(s)	327, 590, 752
BslFI	GGGAC	1 cut(s)	903
BslI	CCNNNNNNNGG	1 cut(s)	663
BsmAI	GTCTC	2 cut(s)	283, 504
BsmFI	GGGAC	1 cut(s)	903
BsnI	GGCC	4 cut(s)	309, 427, 488, 521
Bsp119I	TTCGAA	1 cut(s)	549
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	7 cut(s)	37, 207, 378, 452, 826, 978, 1006
BspACI	CCGC	4 cut(s)	212, 313, 726, 756
BspANI	GGCC	4 cut(s)	309, 427, 488, 521
BspCNI	CTCAG	4 cut(s)	64, 429, 667, 991
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	483
BspPI	GGATC	2 cut(s)	460, 821
BspT104I	TTCGAA	1 cut(s)	549
BspTI	CTTAAG	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	3 cut(s)	57, 489, 522
BssECI	CCNNGG	3 cut(s)	5, 86, 830
BssMI	GATC	7 cut(s)	37, 207, 378, 452, 826, 978, 1006
BssT1I	CCWWGG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	2 cut(s)	596, 874
BstAFI	CTTAAG	1 cut(s)	947
BstBI	TTCGAA	1 cut(s)	549
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	5 cut(s)	51, 437, 675, 712, 999
BstDSI	CCRYGG	1 cut(s)	86
BstEII	GGTNACC	1 cut(s)	784
BstF5I	GGATG	1 cut(s)	1009
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	7 cut(s)	40, 210, 381, 455, 829, 981, 1009
BstMAI	GTCTC	2 cut(s)	283, 504
BstMBI	GATC	7 cut(s)	37, 207, 378, 452, 826, 978, 1006
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 560
BstNI	CCWGG	1 cut(s)	7
BstPI	GGTNACC	1 cut(s)	784
BstSCI	CCNGG	2 cut(s)	5, 751
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	416
BstV2I	GAAGAC	2 cut(s)	407, 439
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	629
BsuRI	GGCC	4 cut(s)	309, 427, 488, 521
BtgI	CCRYGG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	1009
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	267, 996
BveI	ACCTGC	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	311
CseI	GACGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	352, 472
CviAII	CATG	6 cut(s)	119, 392, 482, 658, 886, 925
CviQI	GTAC	2 cut(s)	352, 472
DdeI	CTNAG	5 cut(s)	51, 437, 675, 712, 999
DpnI	GATC	7 cut(s)	39, 209, 380, 454, 828, 980, 1008
DpnII	GATC	7 cut(s)	37, 207, 378, 452, 826, 978, 1006
DriI	GACNNNNNGTC	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	425
Eam1105I	GACNNNNNGTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	771
Eco130I	CCWWGG	1 cut(s)	830
Eco147I	AGGCCT	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	480
Eco91I	GGTNACC	1 cut(s)	784
EcoO65I	GGTNACC	1 cut(s)	784
EcoRI	GAATTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	830
ErhI	CCWWGG	1 cut(s)	830
FaeI	CATG	6 cut(s)	122, 395, 485, 661, 889, 928
FaqI	GGGAC	1 cut(s)	903
FatI	CATG	6 cut(s)	118, 391, 481, 657, 885, 924
FauI	CCCGC	1 cut(s)	306
FbaI	TGATCA	2 cut(s)	378, 1006
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	1 cut(s)	1016
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	4 cut(s)	536, 615, 641, 959
GluI	GCNGC	1 cut(s)	405
HaeIII	GGCC	4 cut(s)	309, 427, 488, 521
HapII	CCGG	3 cut(s)	327, 590, 752
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	6 cut(s)	122, 395, 485, 661, 889, 928
HinfI	GANTC	2 cut(s)	235, 586
HpaII	CCGG	3 cut(s)	327, 590, 752
HphI	GGTGA	4 cut(s)	298, 344, 373, 778
Hpy166II	GTNNAC	2 cut(s)	67, 352
Hpy188I	TCNGA	5 cut(s)	54, 572, 609, 676, 983
Hpy188III	TCNNGA	6 cut(s)	41, 419, 536, 590, 647, 1010
Hpy8I	GTNNAC	2 cut(s)	67, 352
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	7 cut(s)	152, 276, 455, 661, 832, 960, 1010
HpyCH4III	ACNGT	2 cut(s)	596, 874
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	7 cut(s)	122, 260, 404, 478, 578, 809, 894
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 560
HpyF3I	CTNAG	5 cut(s)	51, 437, 675, 712, 999
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	6 cut(s)	122, 395, 485, 661, 889, 928
Kpn2I	TCCGGA	1 cut(s)	589
Ksp22I	TGATCA	2 cut(s)	378, 1006
Kzo9I	GATC	7 cut(s)	37, 207, 378, 452, 826, 978, 1006
LmnI	GCTCC	2 cut(s)	109, 649
Lsp1109I	GCAGC	1 cut(s)	416
MaeI	CTAG	4 cut(s)	536, 615, 641, 959
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	3 cut(s)	598, 767, 784
MalI	GATC	7 cut(s)	39, 209, 380, 454, 828, 980, 1008
MboI	GATC	7 cut(s)	37, 207, 378, 452, 826, 978, 1006
MboII	GAAGA	6 cut(s)	44, 47, 107, 407, 444, 975
MlsI	TGGCCA	1 cut(s)	427
MluCI	AATT	5 cut(s)	150, 298, 545, 720, 819
MluNI	TGGCCA	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	7 cut(s)	155, 323, 478, 504, 947, 985, 994
Mox20I	TGGCCA	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	589
MscI	TGGCCA	1 cut(s)	427
MseI	TTAA	3 cut(s)	224, 813, 948
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	947
MspI	CCGG	3 cut(s)	327, 590, 752
MspR9I	CCNGG	2 cut(s)	7, 753
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	21, 560
NciI	CCSGG	1 cut(s)	753
NdeII	GATC	7 cut(s)	37, 207, 378, 452, 826, 978, 1006
NlaIII	CATG	6 cut(s)	122, 395, 485, 661, 889, 928
NmuCI	GTSAC	2 cut(s)	767, 784
NspV	TTCGAA	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	5
PspEI	GGTNACC	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	5
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	2 cut(s)	353, 473
RsaNI	GTAC	2 cut(s)	352, 472
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	224, 813, 948
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	7 cut(s)	37, 207, 378, 452, 826, 978, 1006
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	7, 753
SfuI	TTCGAA	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	104, 947
SmoI	CTYRAG	2 cut(s)	104, 947
Sse9I	AATT	5 cut(s)	150, 298, 545, 720, 819
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	4 cut(s)	212, 313, 726, 756
SspMI	CTAG	4 cut(s)	536, 615, 641, 959
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	5, 751
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	2 cut(s)	596, 874
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	4 cut(s)	187, 549, 798, 869
TasI	AATT	5 cut(s)	150, 298, 545, 720, 819
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	3 cut(s)	224, 813, 948
Tru9I	TTAA	3 cut(s)	224, 813, 948
TscAI	CASTG	2 cut(s)	267, 1003
TseFI	GTSAC	2 cut(s)	767, 784
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	2 cut(s)	767, 784
TspDTI	ATGAA	3 cut(s)	107, 351, 902
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	267, 1003
Vha464I	CTTAAG	1 cut(s)	947
XapI	RAATTY	2 cut(s)	298, 545
XbaI	TCTAGA	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	931
XspI	CTAG	4 cut(s)	536, 615, 641, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.