Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0016925

Physical Location & Seq

Genomic Coordinates Forward (+)

18670135 .. 18671856

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCCCTGGAACTGCTTTTGTTGCGTTGCCGAAGAAGATCAAGAACCTGCTCAGACCAGGGTTCACAAGAATAGGGATTACCCGTGGGAAATATATTCTCTCAAGGAGCTTCTTCATGCAACAAACAGCTTCCACGATGATAACAAAATTGGAGAAGGAGGGTTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGTAAAACGATTAAAGACGATGAGTCCAAAAGCAGAGATGGAGTTTGCAGTGGAAGTTGAAATACTTGGAAGGGTGAGACACAGAAATTTGTTAGGCCTGCGGGGATTTTATGCCGGAGGTGATGAAAGGCTCATAGTGTACGATTTTATGCCTAATCATAGCTTGATCACCCATTTACATGGCAAACTTGCAGCAGATTGTCTTCTTGATTGGCCAAGAAGACTGAGCATTGCCATTGGATCAGCTGAAGGTTTATCGTACCTGCACCATGAGGCCAGTCCTCATATAATCCACAGAGACATAAAGGCCAGTAATGTGCTTCTAGATACTGAATTTGAAGCCAAAGTTGCTGATTTCGGATTTGCAAAGCTGATTCCGGACGGTGTAACTCATCTGACCACTAGGGTAAAGGGAACTCTTGGATACCTAGCTCCTGAATATGCCATGTGGGGGAAGGTTTCTGAGAGTTGTGATGTTTATAGCTTTGGGATTTTGCTCTTAGAAATAATTAGCGGAAAAAAGCCGATAGAAAAACTACCAGGCGGAGTGAAACGTGACATTGTTCAATGGGTCACCCCCTATGTCCAAAAGGGTGCATTTAATCAAATTGTTCCAGATCGATCCAAGGTTGAAGGGCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

280

Amino Acids

31.45

Weight (kDa)

6.87

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016925)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g28620
malus_domestica	MD00G1002700.v1.1 MD01G1191900.v1.1
prunus_persica	Prupe.2G286200_v2.0.a1
pyrus_communis	pycom01g20300 pycom07g23870
rosa_chinensis	RchiOBHm_Chr1g0376081
rosa_multiflora	Rmu_ssc0000116.1_g000028
rosa_roxburghii	Rroxscaffold_4G00282400
rosa_rugosa	Rorug01G0393800
rosa_samantha	Rh1AG405200 Rh1BG368800 Rh1DG398700
rosa_wichuraiana	Rw1G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	55, 465
AccIII	TCCGGA	1 cut(s)	571
AciI	CCGC	3 cut(s)	295, 708, 738
AclWI	GGATC	2 cut(s)	442, 810
AcoI	YGGCCR	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	280, 527
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	2 cut(s)	335, 455
AfiI	CCNNNNNNNGG	1 cut(s)	645
AgsI	TTSAA	4 cut(s)	254, 533, 761, 827
AhdI	GACNNNNNGTC	1 cut(s)	216
AjnI	CCWGG	3 cut(s)	5, 56, 733
AjuI	GAANNNNNNNTTGG	4 cut(s)	147, 160, 179, 192
AluBI	AGCT	7 cut(s)	109, 129, 357, 440, 565, 626, 678
AluI	AGCT	7 cut(s)	109, 129, 357, 440, 565, 626, 678
Alw26I	GTCTC	2 cut(s)	265, 486
AlwI	GGATC	2 cut(s)	442, 810
Aor13HI	TCCGGA	1 cut(s)	571
AoxI	GGCC	4 cut(s)	289, 407, 468, 501
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	280, 527
AsuHPI	GGTGA	4 cut(s)	280, 326, 355, 760
BalI	TGGCCA	1 cut(s)	409
BarI	GAAGNNNNNNTAC	2 cut(s)	240, 272
BbsI	GAAGAC	2 cut(s)	389, 421
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	3 cut(s)	7, 58, 735
BciVI	GTATCC	1 cut(s)	611
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	265, 486
BfaI	CTAG	3 cut(s)	518, 597, 623
BfuAI	ACCTGC	2 cut(s)	55, 465
BfuI	GTATCC	1 cut(s)	611
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	3 cut(s)	7, 58, 735
BmeRI	GACNNNNNGTC	1 cut(s)	216
BmrFI	CCNGG	3 cut(s)	7, 58, 735
BpiI	GAAGAC	2 cut(s)	389, 421
BpuEI	CTTGAG	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	814
BsaJI	CCNNGG	4 cut(s)	5, 57, 83, 819
BsaWI	WCCGGW	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	1 cut(s)	645
Bse1I	ACTGG	2 cut(s)	471, 504
Bse3DI	GCAATG	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	571
BseBI	CCWGG	3 cut(s)	7, 58, 735
BseCI	ATCGAT	1 cut(s)	814
BseDI	CCNNGG	4 cut(s)	5, 57, 83, 819
BseLI	CCNNNNNNNGG	1 cut(s)	645
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	65, 410, 648
BseNI	ACTGG	2 cut(s)	471, 504
BseXI	GCAGC	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	443
BshFI	GGCC	4 cut(s)	291, 409, 470, 503
BshVI	ATCGAT	1 cut(s)	814
BsiSI	CCGG	2 cut(s)	309, 572
BslI	CCNNNNNNNGG	1 cut(s)	645
BsmAI	GTCTC	2 cut(s)	265, 486
BsnI	GGCC	4 cut(s)	291, 409, 470, 503
Bsp13I	TCCGGA	1 cut(s)	571
Bsp143I	GATC	5 cut(s)	37, 360, 434, 811, 815
BspACI	CCGC	3 cut(s)	295, 708, 738
BspANI	GGCC	4 cut(s)	291, 409, 470, 503
BspCNI	CTCAG	3 cut(s)	64, 411, 649
BspDI	ATCGAT	1 cut(s)	814
BspEI	TCCGGA	1 cut(s)	571
BspMI	ACCTGC	2 cut(s)	55, 465
BspPI	GGATC	2 cut(s)	442, 810
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	471, 504
BssECI	CCNNGG	4 cut(s)	5, 57, 83, 819
BssMI	GATC	5 cut(s)	37, 360, 434, 811, 815
BssT1I	CCWWGG	1 cut(s)	819
Bst2UI	CCWGG	3 cut(s)	7, 58, 735
Bst4CI	ACNGT	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	51, 419, 657, 694
BstDSI	CCRYGG	1 cut(s)	83
BstEII	GGTNACC	1 cut(s)	766
BstKTI	GATC	5 cut(s)	40, 363, 437, 814, 818
BstMAI	GTCTC	2 cut(s)	265, 486
BstMBI	GATC	5 cut(s)	37, 360, 434, 811, 815
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 542
BstNI	CCWGG	3 cut(s)	7, 58, 735
BstPI	GGTNACC	1 cut(s)	766
BstSCI	CCNGG	3 cut(s)	5, 56, 733
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	2 cut(s)	389, 421
BstXI	CCANNNNNNTGG	1 cut(s)	374
Bsu15I	ATCGAT	1 cut(s)	814
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	4 cut(s)	291, 409, 470, 503
BsuTUI	ATCGAT	1 cut(s)	814
BtgI	CCRYGG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	249
BveI	ACCTGC	2 cut(s)	55, 465
Cac8I	GCNNGC	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	814
Csp6I	GTAC	2 cut(s)	334, 454
CviAII	CATG	4 cut(s)	116, 374, 464, 640
CviQI	GTAC	2 cut(s)	334, 454
DdeI	CTNAG	4 cut(s)	51, 419, 657, 694
DpnI	GATC	5 cut(s)	39, 362, 436, 813, 817
DpnII	GATC	5 cut(s)	37, 360, 434, 811, 815
DriI	GACNNNNNGTC	1 cut(s)	216
EaeI	YGGCCR	1 cut(s)	407
Eam1105I	GACNNNNNGTC	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	753
Eco130I	CCWWGG	1 cut(s)	819
Eco147I	AGGCCT	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	766
EcoO65I	GGTNACC	1 cut(s)	766
EcoRII	CCWGG	3 cut(s)	5, 56, 733
EcoT14I	CCWWGG	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	819
FaeI	CATG	4 cut(s)	119, 377, 467, 643
FatI	CATG	4 cut(s)	115, 373, 463, 639
FauI	CCCGC	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	3 cut(s)	518, 597, 623
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	4 cut(s)	291, 409, 470, 503
HapII	CCGG	2 cut(s)	309, 572
Hin1II	CATG	4 cut(s)	119, 377, 467, 643
HinfI	GANTC	2 cut(s)	217, 568
HpaII	CCGG	2 cut(s)	309, 572
HphI	GGTGA	4 cut(s)	280, 326, 355, 760
Hpy166II	GTNNAC	2 cut(s)	64, 334
Hpy188I	TCNGA	4 cut(s)	54, 554, 591, 658
Hpy188III	TCNNGA	6 cut(s)	41, 401, 518, 572, 629, 809
Hpy8I	GTNNAC	2 cut(s)	64, 334
HpyAV	CCTTC	5 cut(s)	149, 258, 437, 643, 821
HpyCH4III	ACNGT	1 cut(s)	578
HpyCH4IV	ACGT	1 cut(s)	748
HpyCH4V	TGCA	6 cut(s)	119, 242, 386, 460, 560, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 542
HpyF3I	CTNAG	4 cut(s)	51, 419, 657, 694
HpySE526I	ACGT	1 cut(s)	748
Hsp92II	CATG	4 cut(s)	119, 377, 467, 643
Kpn2I	TCCGGA	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	37, 360, 434, 811, 815
LmnI	GCTCC	2 cut(s)	106, 631
Lsp1109I	GCAGC	1 cut(s)	398
MaeI	CTAG	3 cut(s)	518, 597, 623
MaeII	ACGT	1 cut(s)	748
MaeIII	GTNAC	3 cut(s)	580, 749, 766
MalI	GATC	5 cut(s)	39, 362, 436, 813, 817
MboI	GATC	5 cut(s)	37, 360, 434, 811, 815
MboII	GAAGA	5 cut(s)	44, 47, 104, 389, 426
MlsI	TGGCCA	1 cut(s)	409
MluCI	AATT	5 cut(s)	147, 280, 527, 702, 801
MluNI	TGGCCA	1 cut(s)	409
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	4 cut(s)	152, 305, 460, 486
Mox20I	TGGCCA	1 cut(s)	409
MroI	TCCGGA	1 cut(s)	571
MscI	TGGCCA	1 cut(s)	409
MseI	TTAA	2 cut(s)	206, 795
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	409
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	2 cut(s)	309, 572
MspR9I	CCNGG	3 cut(s)	7, 58, 735
MvaI	CCWGG	3 cut(s)	7, 58, 735
MwoI	GCNNNNNNNGC	2 cut(s)	21, 542
NdeII	GATC	5 cut(s)	37, 360, 434, 811, 815
NlaIII	CATG	4 cut(s)	119, 377, 467, 643
NmuCI	GTSAC	2 cut(s)	749, 766
PceI	AGGCCT	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	568
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp6I	CCWGG	3 cut(s)	5, 56, 733
PspEI	GGTNACC	1 cut(s)	766
PspGI	CCWGG	3 cut(s)	5, 56, 733
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	335, 455
RsaNI	GTAC	2 cut(s)	334, 454
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	206, 795
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	5 cut(s)	37, 360, 434, 811, 815
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	3 cut(s)	7, 58, 735
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	5 cut(s)	147, 280, 527, 702, 801
SseBI	AGGCCT	1 cut(s)	291
SsiI	CCGC	3 cut(s)	295, 708, 738
SspMI	CTAG	3 cut(s)	518, 597, 623
StuI	AGGCCT	1 cut(s)	291
StyD4I	CCNGG	3 cut(s)	5, 56, 733
StyI	CCWWGG	1 cut(s)	819
TaaI	ACNGT	1 cut(s)	578
TaiI	ACGT	1 cut(s)	751
TaqI	TCGA	2 cut(s)	184, 814
TasI	AATT	5 cut(s)	147, 280, 527, 702, 801
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	2 cut(s)	206, 795
Tru9I	TTAA	2 cut(s)	206, 795
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	749, 766
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	2 cut(s)	749, 766
TspDTI	ATGAA	2 cut(s)	104, 333
TspRI	CASTG	1 cut(s)	249
XapI	RAATTY	2 cut(s)	280, 527
XbaI	TCTAGA	1 cut(s)	517
XspI	CTAG	3 cut(s)	518, 597, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.