FvH4_7g29230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016398
Physical Location & Seq
Reverse (-)
21573636 .. 21574669
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29230.t1

Sequence Viewer

Length: 378 bp
ATGGAGTCGAACGTGCCCATCAGCTGGACAAACGAGAAGCATGTGCAGTTCTTGAACACCATGGAGGCTTCCTTTGTGTGCTCCATGTTCGAAAGCAAGGGTCGCGTTGCTCGTCTCGATCGTTTTGTGCCGGACACCTCCGACTCGACCCTAGATCGGATCAGAACCCCAAAGACGACGACCAAGAAATCTGGTCCGATACGACGAATGGGCGGCGGAGCTGTCAGAAGAACAAGGAGATTACCGTCGCAACCGTTCATTTCTTCGCAGCTGGATCAGGTGGTTCCGCAGTATGATATCTCAGTAGTTGGTGACTTGGTGATAAAGCACTATGAGAGATGCGTAGAAAATAAAAATGAGAAAGTTGCAGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

9.51

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29230
malus_domestica MD01G1198900.v1.1 MD07G1266700.v1.1
prunus_persica Prupe.2G292300_v2.0.a1
pyrus_communis pycom07g24450
rosa_chinensis RchiOBHm_Chr1g0376981
rosa_laevigata RLG00000026554
rosa_multiflora Rmu_ssc0000155.1_g000032
rosa_roxburghii Rroxscaffold_4G00281580
rosa_rugosa Rorug01G0400200
rosa_samantha Rh1AG417300 Rh1BG376700 Rh1CG390500 Rh1DG407400
rosa_wichuraiana Rw1G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 24
AccII CGCG 1 cut(s) 105
AciI CCGC 3 cut(s) 213, 216, 287
AclWI GGATC 2 cut(s) 167, 282
AfiI CCNNNNNNNGG 2 cut(s) 24, 156
AgsI TTSAA 1 cut(s) 55
AluBI AGCT 3 cut(s) 24, 221, 271
AluI AGCT 3 cut(s) 24, 221, 271
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 2 cut(s) 167, 282
ApeKI GCWGC 1 cut(s) 268
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 323, 331
AsuII TTCGAA 1 cut(s) 90
AvaII GGWCC 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 152
BisI GCNGC 2 cut(s) 214, 269
BlsI GCNGC 2 cut(s) 215, 270
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 285
BmsI GCATC 1 cut(s) 329
Bpu14I TTCGAA 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 156
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 24, 156
BseMII CTCAG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 105
Bsh1285I CGRYCG 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 24, 156
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 2 cut(s) 18, 83
Bsp143I GATC 4 cut(s) 118, 154, 159, 274
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 3 cut(s) 213, 216, 287
BspCNI CTCAG 1 cut(s) 314
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 285
BspPI GGATC 2 cut(s) 167, 282
BspT104I TTCGAA 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 4 cut(s) 118, 154, 159, 274
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 2 cut(s) 246, 255
BstBI TTCGAA 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 301
BstDSI CCRYGG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 105
BstKTI GATC 4 cut(s) 121, 157, 162, 277
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 4 cut(s) 118, 154, 159, 274
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 194
CviAII CATG 4 cut(s) 41, 61, 85, 375
CviJI RGCY 5 cut(s) 24, 68, 221, 271, 373
CviKI_1 RGCY 5 cut(s) 24, 68, 221, 271, 373
DdeI CTNAG 1 cut(s) 301
DpnI GATC 4 cut(s) 120, 156, 161, 276
DpnII GATC 4 cut(s) 118, 154, 159, 274
EciI GGCGGA 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 60
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 194
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 4 cut(s) 44, 64, 88, 378
FaiI YATR 6 cut(s) 42, 62, 86, 294, 333, 376
FatI CATG 4 cut(s) 40, 60, 84, 374
Fnu4HI GCNGC 2 cut(s) 214, 269
Fsp4HI GCNGC 2 cut(s) 214, 269
FspBI CTAG 1 cut(s) 152
GluI GCNGC 2 cut(s) 214, 269
HapII CCGG 1 cut(s) 131
Hin1II CATG 4 cut(s) 44, 64, 88, 378
HinfI GANTC 2 cut(s) 5, 143
HpaII CCGG 1 cut(s) 131
HphI GGTGA 2 cut(s) 323, 331
Hpy188I TCNGA 5 cut(s) 142, 159, 164, 198, 227
Hpy188III TCNNGA 2 cut(s) 52, 116
Hpy99I CGWCG 3 cut(s) 181, 207, 250
HpyCH4III ACNGT 2 cut(s) 246, 255
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 2 cut(s) 46, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 1 cut(s) 301
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 4 cut(s) 44, 64, 88, 378
Kzo9I GATC 4 cut(s) 118, 154, 159, 274
LmnI GCTCC 2 cut(s) 86, 218
LpnPI CCDG 5 cut(s) 10, 144, 177, 257, 263
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 329
MaeI CTAG 1 cut(s) 152
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 311
MalI GATC 4 cut(s) 120, 156, 161, 276
MboI GATC 4 cut(s) 118, 154, 159, 274
MboII GAAGA 2 cut(s) 240, 255
MhlI GDGCHC 2 cut(s) 18, 83
MlyI GAGTC 2 cut(s) 14, 137
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 2 cut(s) 58, 148
MspA1I CMGCKG 2 cut(s) 24, 271
MspI CCGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 102
NcoI CCATGG 1 cut(s) 60
NdeII GATC 4 cut(s) 118, 154, 159, 274
NlaIII CATG 4 cut(s) 44, 64, 88, 378
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 44
NspV TTCGAA 1 cut(s) 90
PcsI WCGNNNNNNNCGW 2 cut(s) 109, 118
PflMI CCANNNNNTGG 1 cut(s) 24
PkrI GCNGC 2 cut(s) 215, 270
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 2 cut(s) 13, 137
PpsI GAGTC 2 cut(s) 13, 137
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 194
PvuI CGATCG 1 cut(s) 121
PvuII CAGCTG 2 cut(s) 24, 271
SatI GCNGC 2 cut(s) 214, 269
Sau3AI GATC 4 cut(s) 118, 154, 159, 274
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 2 cut(s) 14, 137
SduI GDGCHC 2 cut(s) 18, 83
SetI ASST 6 cut(s) 15, 26, 140, 223, 273, 282
SfaNI GCATC 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 1 cut(s) 194
SsiI CCGC 3 cut(s) 213, 216, 287
SspMI CTAG 1 cut(s) 152
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 2 cut(s) 246, 255
TaiI ACGT 1 cut(s) 15
TaqI TCGA 4 cut(s) 8, 90, 117, 146
TauI GCSGC 1 cut(s) 216
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 194
XceI RCATGY 1 cut(s) 44
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.