MD07G1266700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016398
Physical Location & Seq
Reverse (-)
33494847 .. 33498031
3185 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1266700.v1.1.491

Sequence Viewer

Length: 405 bp
ATGGAGTTGTCCCCGGTTAACATGTCGTGGACGAACGAGAAGCACGTCAAGTTTTTGAACAGCATGGAGGAATCCTTCGTGCGTGCCATGCTTGAGAAGAAGAAGAATAACAAGGATCACCGTCATCCTCCTCGTCTCGACCGCTACTTGCCGGACACCTCCGACTCAACCCTGGATCTCAAAACCAGCAGCAGAATCACCAAAAACCGTAACTCCTTACAAGGTGGCAGAATGGGCGGTAGATGTGAAAAAAGATCGAGGACGGTATCATCTCAGCCTTCCAATGCATCACAAGATCAGGTGGTCCCACAGATTGAAATCAGAACGGCTGGTGATAAAGATGAGATGGAGCAACAAAATGTTAATGTACCAGATCAGCTGGCACTGGCTGCACCAACCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

9.16

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29230
malus_domestica MD01G1198900.v1.1 MD07G1266700.v1.1
prunus_persica Prupe.2G292300_v2.0.a1
pyrus_communis pycom07g24450
rosa_chinensis RchiOBHm_Chr1g0376981
rosa_laevigata RLG00000026554
rosa_multiflora Rmu_ssc0000155.1_g000032
rosa_roxburghii Rroxscaffold_4G00281580
rosa_rugosa Rorug01G0400200
rosa_samantha Rh1AG417300 Rh1BG376700 Rh1CG390500 Rh1DG407400
rosa_wichuraiana Rw1G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 142, 237
AclWI GGATC 2 cut(s) 123, 183
AfaI GTAC 1 cut(s) 369
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 2 cut(s) 58, 317
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 2 cut(s) 123, 183
ApeKI GCWGC 2 cut(s) 189, 389
AspS9I GGNCC 1 cut(s) 304
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 110, 190, 344
AvaII GGWCC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 201, 376
BccI CCATC 1 cut(s) 340
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 1 cut(s) 173
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 2 cut(s) 190, 390
BlsI GCNGC 2 cut(s) 191, 391
Bme1390I CCNGG 2 cut(s) 14, 173
Bme18I GGWCC 1 cut(s) 304
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 2 cut(s) 14, 173
BmsI GCATC 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 12, 171
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse1I ACTGG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 317
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 12, 171
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 317
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 201, 376
BsgI GTGCAG 1 cut(s) 375
Bsh1285I CGRYCG 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 2 cut(s) 14, 152
BslFI GGGAC 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 290
Bsp143I GATC 5 cut(s) 115, 175, 254, 295, 373
BspACI CCGC 2 cut(s) 142, 237
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 2 cut(s) 123, 183
BsrI ACTGG 1 cut(s) 390
BssECI CCNNGG 2 cut(s) 12, 171
BssMI GATC 5 cut(s) 115, 175, 254, 295, 373
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 3 cut(s) 122, 209, 265
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 84, 381
BstDEI CTNAG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 5 cut(s) 118, 178, 257, 298, 376
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 5 cut(s) 115, 175, 254, 295, 373
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 88, 234, 389
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 12, 171
BstV1I GCAGC 2 cut(s) 201, 376
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 2 cut(s) 84, 381
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 1 cut(s) 368
CviAII CATG 3 cut(s) 22, 64, 88
CviJI RGCY 4 cut(s) 277, 329, 379, 389
CviKI_1 RGCY 4 cut(s) 277, 329, 379, 389
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 1 cut(s) 273
DpnI GATC 5 cut(s) 117, 177, 256, 297, 375
DpnII GATC 5 cut(s) 115, 175, 254, 295, 373
Eco47I GGWCC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 171
EcoT22I ATGCAT 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 3 cut(s) 25, 67, 91
FaiI YATR 3 cut(s) 23, 65, 89
FaqI GGGAC 1 cut(s) 290
FatI CATG 3 cut(s) 21, 63, 87
Fnu4HI GCNGC 2 cut(s) 190, 390
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 190, 390
GluI GCNGC 2 cut(s) 190, 390
HapII CCGG 2 cut(s) 14, 152
Hin1II CATG 3 cut(s) 25, 67, 91
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 3 cut(s) 71, 164, 195
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 2 cut(s) 14, 152
HphI GGTGA 3 cut(s) 110, 190, 344
Hpy166II GTNNAC 2 cut(s) 19, 30
Hpy188I TCNGA 2 cut(s) 163, 323
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 2 cut(s) 19, 30
HpyAV CCTTC 2 cut(s) 85, 288
HpyCH4III ACNGT 3 cut(s) 122, 209, 265
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 287, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 234, 389
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 3 cut(s) 25, 67, 91
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 5 cut(s) 115, 175, 254, 295, 373
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 2 cut(s) 201, 376
LweI GCATC 1 cut(s) 296
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 209
MalI GATC 5 cut(s) 117, 177, 256, 297, 375
MboI GATC 5 cut(s) 115, 175, 254, 295, 373
MboII GAAGA 3 cut(s) 109, 112, 115
MflI RGATCY 1 cut(s) 175
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 5 cut(s) 61, 138, 141, 169, 252
Mph1103I ATGCAT 1 cut(s) 289
MseI TTAA 2 cut(s) 18, 363
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 2 cut(s) 14, 152
MspR9I CCNGG 2 cut(s) 14, 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 88, 234, 389
NciI CCSGG 1 cut(s) 14
NdeII GATC 5 cut(s) 115, 175, 254, 295, 373
NlaIII CATG 3 cut(s) 25, 67, 91
NlaIV GGNNCC 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 289
NspI RCATGY 1 cut(s) 25
PciI ACATGT 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 2 cut(s) 71, 195
PkrI GCNGC 2 cut(s) 191, 391
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PscI ACATGT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SaqAI TTAA 2 cut(s) 18, 363
SatI GCNGC 2 cut(s) 190, 390
Sau3AI GATC 5 cut(s) 115, 175, 254, 295, 373
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 14, 173
SetI ASST 5 cut(s) 48, 161, 226, 303, 381
SfaNI GCATC 1 cut(s) 296
SinI GGWCC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SsiI CCGC 2 cut(s) 142, 237
StyD4I CCNGG 2 cut(s) 12, 171
TaaI ACNGT 3 cut(s) 122, 209, 265
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 138, 257
TfiI GAWTC 2 cut(s) 71, 195
Tru1I TTAA 2 cut(s) 18, 363
Tru9I TTAA 2 cut(s) 18, 363
TscAI CASTG 1 cut(s) 390
TseI GCWGC 2 cut(s) 189, 389
TspRI CASTG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 304
XceI RCATGY 1 cut(s) 25
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.