Rorug01G0400200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016398
Physical Location & Seq
Forward (+)
50883876 .. 50884247
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0400200.1

Sequence Viewer

Length: 372 bp
ATGACTTCGATCATCAACAACAAGAAAGCAGCTGCTGGATTCATTTTAAGAGACCATGAAGCTTCTCCTAAATTTGTTGGTGCTAGAAAGATTGGCAATTCTTCTGTCCCATATATAGCAGAAGGAAATGCAGTTAGAGATGGGCTCTACAACGCCCTAATCCTTAACTTCCGCAGAGTCATTGTTGAAGGTGACTCAAAGCTGATAATAGACGGTATCAACAAGAATTGCACTATTCCATGGCGGTTGAGAACCCTGATCAAGGACATTCTTAGTCTTGCAAACAACTTTGAAGAAATCTCCTTCGTCGTGAAGCAAATTTCCTTGCGGATGCCATTGCAAACACTGCGCATGGCTCTTCTGTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.79

Weight (kDa)

10.0

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 103 4.3e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29230
malus_domestica MD01G1198900.v1.1 MD07G1266700.v1.1
prunus_persica Prupe.2G292300_v2.0.a1
pyrus_communis pycom07g24450
rosa_chinensis RchiOBHm_Chr1g0376981
rosa_laevigata RLG00000026554
rosa_multiflora Rmu_ssc0000155.1_g000032
rosa_roxburghii Rroxscaffold_4G00281580
rosa_rugosa Rorug01G0400200
rosa_samantha Rh1AG417300 Rh1BG376700 Rh1CG390500 Rh1DG407400
rosa_wichuraiana Rw1G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 350
AciI CCGC 3 cut(s) 172, 244, 328
AcsI RAATTY 2 cut(s) 71, 318
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 2 cut(s) 188, 293
AluBI AGCT 3 cut(s) 32, 62, 202
AluI AGCT 3 cut(s) 32, 62, 202
Alw26I GTCTC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 29, 32
ApoI RAATTY 2 cut(s) 71, 318
AspLEI GCGC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 203
BanII GRGCYC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 19, 41
BccI CCATC 1 cut(s) 134
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 1 cut(s) 84
BisI GCNGC 2 cut(s) 30, 33
BlsI GCNGC 2 cut(s) 31, 34
BmsI GCATC 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 129, 161
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 335
BseXI GCAGC 2 cut(s) 19, 41
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 9, 258
Bsp19I CCATGG 1 cut(s) 239
BspACI CCGC 3 cut(s) 172, 244, 328
BspQI GCTCTTC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 2 cut(s) 9, 258
BssT1I CCWWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 363
BstAPI GCANNNNNTGC 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 239
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 2 cut(s) 12, 261
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 9, 258
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 19, 41
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 344
CaiI CAGNNNCTG 1 cut(s) 35
CfoI GCGC 1 cut(s) 351
CviAII CATG 3 cut(s) 56, 240, 352
CviJI RGCY 5 cut(s) 32, 62, 145, 202, 356
CviKI_1 RGCY 5 cut(s) 32, 62, 145, 202, 356
DdeI CTNAG 1 cut(s) 272
DpnI GATC 2 cut(s) 11, 260
DpnII GATC 2 cut(s) 9, 258
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 260
EcoT14I CCWWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 3 cut(s) 59, 243, 355
FaiI YATR 6 cut(s) 57, 112, 114, 116, 241, 353
FaqI GGGAC 1 cut(s) 92
FatI CATG 3 cut(s) 55, 239, 351
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 30, 33
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 2 cut(s) 30, 33
FspBI CTAG 1 cut(s) 84
FspI TGCGCA 1 cut(s) 350
GlaI GCGC 1 cut(s) 350
GluI GCNGC 2 cut(s) 30, 33
HhaI GCGC 1 cut(s) 351
Hin1II CATG 3 cut(s) 59, 243, 355
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 60
HinfI GANTC 3 cut(s) 39, 177, 194
HphI GGTGA 1 cut(s) 203
Hpy188III TCNNGA 1 cut(s) 310
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 3 cut(s) 116, 182, 313
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 4 cut(s) 131, 231, 281, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 3 cut(s) 59, 243, 355
HspAI GCGC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 2 cut(s) 9, 258
LguI GCTCTTC 1 cut(s) 363
LpnPI CCDG 2 cut(s) 21, 269
Lsp1109I GCAGC 2 cut(s) 19, 41
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 11, 260
MboI GATC 2 cut(s) 9, 258
MboII GAAGA 3 cut(s) 93, 305, 350
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 4 cut(s) 71, 97, 226, 318
MlyI GAGTC 2 cut(s) 186, 188
MseI TTAA 2 cut(s) 47, 165
MspA1I CMGCKG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 346
NcoI CCATGG 1 cut(s) 239
NdeII GATC 2 cut(s) 9, 258
NlaIII CATG 3 cut(s) 59, 243, 355
NmuCI GTSAC 1 cut(s) 191
NsbI TGCGCA 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 2 cut(s) 31, 34
PleI GAGTC 2 cut(s) 185, 188
PpsI GAGTC 2 cut(s) 185, 188
PstNI CAGNNNCTG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 47, 165
SatI GCNGC 2 cut(s) 30, 33
Sau3AI GATC 2 cut(s) 9, 258
SchI GAGTC 2 cut(s) 186, 188
SduI GDGCHC 1 cut(s) 147
SetI ASST 4 cut(s) 34, 64, 193, 204
SfaNI GCATC 1 cut(s) 321
Sse9I AATT 4 cut(s) 71, 97, 226, 318
SsiI CCGC 3 cut(s) 172, 244, 328
SspMI CTAG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 71, 97, 226, 318
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 2 cut(s) 47, 165
Tru9I TTAA 2 cut(s) 47, 165
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 29, 32
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 31, 72
TspRI CASTG 1 cut(s) 351
XagI CCTNNNNNAGG 1 cut(s) 260
XapI RAATTY 2 cut(s) 71, 318
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.