pycom07g24450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0016398
Physical Location & Seq
Reverse (-)
25164340 .. 25166450
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g24450.2

Sequence Viewer

Length: 411 bp
ATGGAGTTGTCCCCGGTTAACATGTCGTGGACGAACGAGAAGCACGTCAAGTTTTTGAACAGCATGGAGGAATCCTTCGTGCGTGCCATGTTTGAGAAGAAGAAGAACAAGGATCACCGTCATCTTCCTCATCTTCCTCGTCTCGACCGCTACTTGCCGGACACCTCCGACTCAACCCTGGATCTCAAAACCAGCAGCAGAATCACCAAAAACCGTAACTCCTTACAAGGTGGCAGAATGGCCGGTAGATGTGAAAAAAGATCGAGGACGGTATCATCTCAGCCTTCCAAAACATCACAAGATCAGGTGGTACCACAGATTGAAATCAGAACGGCTGGTGATAAAGATGAGATAGAGCAACAAAATGTTAATGTACCAGATCAGCTGGCACTGGCTGCACCAATCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.56

Weight (kDa)

9.37

Isoelectric Point (pI)

63.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29230
malus_domestica MD01G1198900.v1.1 MD07G1266700.v1.1
prunus_persica Prupe.2G292300_v2.0.a1
pyrus_communis pycom07g24450
rosa_chinensis RchiOBHm_Chr1g0376981
rosa_laevigata RLG00000026554
rosa_multiflora Rmu_ssc0000155.1_g000032
rosa_roxburghii Rroxscaffold_4G00281580
rosa_rugosa Rorug01G0400200
rosa_samantha Rh1AG417300 Rh1BG376700 Rh1CG390500 Rh1DG407400
rosa_wichuraiana Rw1G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 310
AciI CCGC 1 cut(s) 148
AclWI GGATC 2 cut(s) 120, 189
AcoI YGGCCR 1 cut(s) 240
AfaI GTAC 2 cut(s) 312, 375
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 2 cut(s) 58, 323
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 1 cut(s) 385
AluI AGCT 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 2 cut(s) 120, 189
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 195, 395
Asp718I GGTACC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 107, 196, 350
BanI GGYRCC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 207, 382
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 146
BisI GCNGC 2 cut(s) 196, 396
BlsI GCNGC 2 cut(s) 197, 397
Bme1390I CCNGG 2 cut(s) 14, 179
BmgBI CACGTC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 2 cut(s) 14, 179
BpuMI CCSGG 1 cut(s) 14
BsaBI GATNNNNATC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 12, 177
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 396
Bse8I GATNNNNATC 1 cut(s) 323
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 12, 177
BseJI GATNNNNATC 1 cut(s) 323
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 396
BseXI GCAGC 2 cut(s) 207, 382
BsgI GTGCAG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 310
BsiEI CGRYCG 1 cut(s) 148
BsiSI CCGG 3 cut(s) 14, 158, 243
BsmAI GTCTC 1 cut(s) 146
BsmBI CGTCTC 1 cut(s) 146
BsnI GGCC 1 cut(s) 242
Bsp143I GATC 5 cut(s) 112, 181, 260, 301, 379
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 312
BspPI GGATC 2 cut(s) 120, 189
BspT107I GGYRCC 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 12, 177
BssMI GATC 5 cut(s) 112, 181, 260, 301, 379
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 3 cut(s) 119, 215, 271
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 84, 387
BstDEI CTNAG 1 cut(s) 279
BstKTI GATC 5 cut(s) 115, 184, 263, 304, 382
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 5 cut(s) 112, 181, 260, 301, 379
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 12, 177
BstV1I GCAGC 2 cut(s) 207, 382
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 242
BtrI CACGTC 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 2 cut(s) 84, 387
Cfr10I RCCGGY 1 cut(s) 242
Csp6I GTAC 2 cut(s) 311, 374
CviAII CATG 3 cut(s) 22, 64, 88
CviJI RGCY 5 cut(s) 242, 283, 335, 385, 395
CviKI_1 RGCY 5 cut(s) 242, 283, 335, 385, 395
CviQI GTAC 2 cut(s) 311, 374
DdeI CTNAG 1 cut(s) 279
DpnI GATC 5 cut(s) 114, 183, 262, 303, 381
DpnII GATC 5 cut(s) 112, 181, 260, 301, 379
EaeI YGGCCR 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 3 cut(s) 25, 67, 91
FaiI YATR 3 cut(s) 23, 65, 89
FatI CATG 3 cut(s) 21, 63, 87
Fnu4HI GCNGC 2 cut(s) 196, 396
Fsp4HI GCNGC 2 cut(s) 196, 396
GluI GCNGC 2 cut(s) 196, 396
HaeIII GGCC 1 cut(s) 242
HapII CCGG 3 cut(s) 14, 158, 243
Hin1II CATG 3 cut(s) 25, 67, 91
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 3 cut(s) 71, 170, 201
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 3 cut(s) 14, 158, 243
HphI GGTGA 3 cut(s) 107, 196, 350
Hpy166II GTNNAC 2 cut(s) 19, 30
Hpy188I TCNGA 2 cut(s) 169, 329
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 19, 30
HpyAV CCTTC 2 cut(s) 85, 294
HpyCH4III ACNGT 3 cut(s) 119, 215, 271
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 3 cut(s) 25, 67, 91
KpnI GGTACC 1 cut(s) 314
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 5 cut(s) 112, 181, 260, 301, 379
Lsp1109I GCAGC 2 cut(s) 207, 382
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 215
MalI GATC 5 cut(s) 114, 183, 262, 303, 381
MboI GATC 5 cut(s) 112, 181, 260, 301, 379
MboII GAAGA 5 cut(s) 109, 112, 115, 116, 125
MflI RGATCY 1 cut(s) 181
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 5 cut(s) 61, 138, 147, 175, 258
MseI TTAA 2 cut(s) 18, 369
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 3 cut(s) 14, 158, 243
MspR9I CCNGG 2 cut(s) 14, 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 14
NdeII GATC 5 cut(s) 112, 181, 260, 301, 379
NlaIII CATG 3 cut(s) 25, 67, 91
NlaIV GGNNCC 1 cut(s) 312
NspI RCATGY 1 cut(s) 25
PciI ACATGT 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 2 cut(s) 71, 201
PkrI GCNGC 2 cut(s) 197, 397
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PscI ACATGT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 312
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 385
RsaI GTAC 2 cut(s) 312, 375
RsaNI GTAC 2 cut(s) 311, 374
SaqAI TTAA 2 cut(s) 18, 369
SatI GCNGC 2 cut(s) 196, 396
Sau3AI GATC 5 cut(s) 112, 181, 260, 301, 379
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 14, 179
SetI ASST 5 cut(s) 48, 167, 232, 309, 387
SsiI CCGC 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 12, 177
TaaI ACNGT 3 cut(s) 119, 215, 271
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 144, 263
TfiI GAWTC 2 cut(s) 71, 201
Tru1I TTAA 2 cut(s) 18, 369
Tru9I TTAA 2 cut(s) 18, 369
TscAI CASTG 1 cut(s) 396
TseI GCWGC 2 cut(s) 195, 395
TspRI CASTG 1 cut(s) 396
XceI RCATGY 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.