Rh1CG390500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0016398
Physical Location & Seq
Reverse (-)
65926515 .. 65927920
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG390500.1

Sequence Viewer

Length: 360 bp
ATGGAGTCGCACGTGCCCATCAGCTGGACGAACGAGAAGCATGTGCAGTTCTTGAACACCATGGAGGCTTCCTTTGTGTGCTCCATGATTGAAAACAAGGGTCGCCTTGCTCGTCTCGATCGTTACGTGCCGGACACCTCCGACTCGACCCTAGATCTGATCAAAACACCCCGGACAACCAAAAAATCTGGTCCGGTACGCAGAATGGACGGCGGAGCTGTCAGAAGAACAAGGAGATTATCGTCGCAACCGTTCATTTCTTCGCAGCTGGATCAGGTTGATAATACTTCTGCTTGCTTTTTTACCACTAGGCAGATATTTTGCTTACTTTTACTTCTATCTTTTCTGGTTAGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.6

Weight (kDa)

9.8

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29230
malus_domestica MD01G1198900.v1.1 MD07G1266700.v1.1
prunus_persica Prupe.2G292300_v2.0.a1
pyrus_communis pycom07g24450
rosa_chinensis RchiOBHm_Chr1g0376981
rosa_laevigata RLG00000026554
rosa_multiflora Rmu_ssc0000155.1_g000032
rosa_roxburghii Rroxscaffold_4G00281580
rosa_rugosa Rorug01G0400200
rosa_samantha Rh1AG417300 Rh1BG376700 Rh1CG390500 Rh1DG407400
rosa_wichuraiana Rw1G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 24
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 279
AcvI CACGTG 1 cut(s) 13
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 2 cut(s) 55, 92
AluBI AGCT 3 cut(s) 24, 218, 268
AluI AGCT 3 cut(s) 24, 218, 268
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 172
AvaII GGWCC 1 cut(s) 191
BaeGI GKGCMC 1 cut(s) 18
BbrPI CACGTG 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 226
BclI TGATCA 1 cut(s) 159
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 152, 309
BglII AGATCT 2 cut(s) 154, 353
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 172
BpuMI CCSGG 1 cut(s) 172
BsaAI YACGTR 2 cut(s) 13, 127
BsaJI CCNNGG 2 cut(s) 60, 170
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 60, 170
BseLI CCNNNNNNNGG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 3 cut(s) 131, 172, 194
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 18, 83
Bsp143I GATC 5 cut(s) 118, 154, 159, 271, 353
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 1 cut(s) 213
BspPI GGATC 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 60, 170
BssMI GATC 5 cut(s) 118, 154, 159, 271, 353
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 252
BstBAI YACGTR 2 cut(s) 13, 127
BstC8I GCNNGC 1 cut(s) 295
BstDSI CCRYGG 1 cut(s) 60
BstKTI GATC 5 cut(s) 121, 157, 162, 274, 356
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 5 cut(s) 118, 154, 159, 271, 353
BstMCI CGRYCG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 277
BstX2I RGATCY 2 cut(s) 154, 353
BstYI RGATCY 2 cut(s) 154, 353
BtgI CCRYGG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 295
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 197
CviAII CATG 3 cut(s) 41, 61, 85
CviJI RGCY 4 cut(s) 24, 68, 218, 268
CviKI_1 RGCY 4 cut(s) 24, 68, 218, 268
CviQI GTAC 1 cut(s) 197
DpnI GATC 5 cut(s) 120, 156, 161, 273, 355
DpnII GATC 5 cut(s) 118, 154, 159, 271, 353
EciI GGCGGA 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 191
Eco72I CACGTG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 3 cut(s) 44, 64, 88
FaiI YATR 3 cut(s) 42, 62, 86
FatI CATG 3 cut(s) 40, 60, 84
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 2 cut(s) 152, 309
GluI GCNGC 1 cut(s) 266
HapII CCGG 3 cut(s) 131, 172, 194
Hin1II CATG 3 cut(s) 44, 64, 88
HinfI GANTC 2 cut(s) 5, 143
HpaII CCGG 3 cut(s) 131, 172, 194
Hpy188I TCNGA 3 cut(s) 142, 159, 224
Hpy188III TCNNGA 2 cut(s) 52, 116
Hpy99I CGWCG 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 2 cut(s) 12, 126
HpyCH4V TGCA 1 cut(s) 46
HpySE526I ACGT 2 cut(s) 12, 126
Hsp92II CATG 3 cut(s) 44, 64, 88
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 5 cut(s) 118, 154, 159, 271, 353
LmnI GCTCC 2 cut(s) 86, 215
LpnPI CCDG 8 cut(s) 10, 144, 174, 185, 207, 254, 260, 332
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 2 cut(s) 152, 309
MaeII ACGT 2 cut(s) 12, 126
MaeIII GTNAC 1 cut(s) 122
MalI GATC 5 cut(s) 120, 156, 161, 273, 355
MboI GATC 5 cut(s) 118, 154, 159, 271, 353
MboII GAAGA 2 cut(s) 237, 252
MflI RGATCY 2 cut(s) 154, 353
MhlI GDGCHC 2 cut(s) 18, 83
MlyI GAGTC 2 cut(s) 14, 137
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 2 cut(s) 58, 148
MseI TTAA 1 cut(s) 358
MspA1I CMGCKG 2 cut(s) 24, 268
MspI CCGG 3 cut(s) 131, 172, 194
MspR9I CCNGG 1 cut(s) 172
NciI CCSGG 1 cut(s) 172
NcoI CCATGG 1 cut(s) 60
NdeII GATC 5 cut(s) 118, 154, 159, 271, 353
NlaIII CATG 3 cut(s) 44, 64, 88
NspI RCATGY 1 cut(s) 44
PcsI WCGNNNNNNNCGW 4 cut(s) 109, 118, 123, 248
PflMI CCANNNNNTGG 1 cut(s) 24
PkrI GCNGC 1 cut(s) 267
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 2 cut(s) 13, 137
PmaCI CACGTG 1 cut(s) 13
PmlI CACGTG 1 cut(s) 13
PpsI GAGTC 2 cut(s) 13, 137
Ppu21I YACGTR 2 cut(s) 13, 127
PspCI CACGTG 1 cut(s) 13
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 2 cut(s) 154, 353
PvuI CGATCG 1 cut(s) 121
PvuII CAGCTG 2 cut(s) 24, 268
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 5 cut(s) 118, 154, 159, 271, 353
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 14, 137
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 2 cut(s) 18, 83
SetI ASST 7 cut(s) 15, 26, 129, 140, 220, 270, 279
SinI GGWCC 1 cut(s) 191
SsiI CCGC 1 cut(s) 213
SspMI CTAG 2 cut(s) 152, 309
StyD4I CCNGG 1 cut(s) 170
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 2 cut(s) 15, 129
TaqI TCGA 2 cut(s) 117, 146
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 191
XceI RCATGY 1 cut(s) 44
XspI CTAG 2 cut(s) 152, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.