Rroxscaffold_4G00281580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016398
Physical Location & Seq
Forward (+)
3817245 .. 3818373
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00281580.1

Sequence Viewer

Length: 324 bp
ATGGAGTCGCACGTGCCTATCAGCTGGACGAACGAGAAGCATGTGCAGTTCTTGAACACCATGGAGGCTTCCTTTGTGTGCTCCATGATTGAAAACAAGGGTCGCCTTGCTCGTCTCGATCGTTACGTGCCGGACACCTCCGACTCGACCGTAGATCTGATCAAAACACCCCAGACAACCAAAAAATCTGGTCCGGTGCGCAGAATGGACGGCGGAGCTGTCAGAAGAACAAGGAGATTATCGTCGCAACCGTTCATTTCTTCGCAGCTGGATCAGGTGGTTCCACAGTTTGAGATCGCAATGGTTGGTGATAAGGTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.09

Weight (kDa)

9.35

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29230
malus_domestica MD01G1198900.v1.1 MD07G1266700.v1.1
prunus_persica Prupe.2G292300_v2.0.a1
pyrus_communis pycom07g24450
rosa_chinensis RchiOBHm_Chr1g0376981
rosa_laevigata RLG00000026554
rosa_multiflora Rmu_ssc0000155.1_g000032
rosa_roxburghii Rroxscaffold_4G00281580
rosa_rugosa Rorug01G0400200
rosa_samantha Rh1AG417300 Rh1BG376700 Rh1CG390500 Rh1DG407400
rosa_wichuraiana Rw1G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 200
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 279
AcvI CACGTG 1 cut(s) 13
AgsI TTSAA 2 cut(s) 55, 92
AluBI AGCT 3 cut(s) 24, 218, 268
AluI AGCT 3 cut(s) 24, 218, 268
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 265
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 191
BbrPI CACGTG 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 226
BclI TGATCA 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 119
BglII AGATCT 1 cut(s) 154
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 282
BsaAI YACGTR 2 cut(s) 13, 127
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 193
Bse3DI GCAATG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 60
BseMI GCAATG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 65
Bsh1285I CGRYCG 2 cut(s) 121, 150
BsiEI CGRYCG 2 cut(s) 121, 150
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 131, 194
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 5 cut(s) 118, 154, 159, 271, 294
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 5 cut(s) 118, 154, 159, 271, 294
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 151, 252, 288
BstBAI YACGTR 2 cut(s) 13, 127
BstDSI CCRYGG 1 cut(s) 60
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 5 cut(s) 121, 157, 162, 274, 297
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 5 cut(s) 118, 154, 159, 271, 294
BstMCI CGRYCG 2 cut(s) 121, 150
BstNSI RCATGY 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 60
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 191
CviAII CATG 3 cut(s) 41, 61, 85
CviJI RGCY 4 cut(s) 24, 68, 218, 268
CviKI_1 RGCY 4 cut(s) 24, 68, 218, 268
DpnI GATC 5 cut(s) 120, 156, 161, 273, 296
DpnII GATC 5 cut(s) 118, 154, 159, 271, 294
EciI GGCGGA 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 191
Eco72I CACGTG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 3 cut(s) 44, 64, 88
FaiI YATR 4 cut(s) 42, 62, 86, 322
FatI CATG 3 cut(s) 40, 60, 84
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 1 cut(s) 200
GluI GCNGC 1 cut(s) 266
HapII CCGG 2 cut(s) 131, 194
HhaI GCGC 1 cut(s) 201
Hin1II CATG 3 cut(s) 44, 64, 88
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 2 cut(s) 5, 143
HpaII CCGG 2 cut(s) 131, 194
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 3 cut(s) 142, 159, 224
Hpy188III TCNNGA 2 cut(s) 52, 116
Hpy99I CGWCG 1 cut(s) 247
HpyCH4III ACNGT 3 cut(s) 151, 252, 288
HpyCH4IV ACGT 2 cut(s) 12, 126
HpyCH4V TGCA 1 cut(s) 46
HpySE526I ACGT 2 cut(s) 12, 126
Hsp92II CATG 3 cut(s) 44, 64, 88
HspAI GCGC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 5 cut(s) 118, 154, 159, 271, 294
LmnI GCTCC 2 cut(s) 86, 215
LpnPI CCDG 7 cut(s) 10, 144, 174, 185, 207, 254, 260
Lsp1109I GCAGC 1 cut(s) 277
MaeII ACGT 2 cut(s) 12, 126
MaeIII GTNAC 1 cut(s) 122
MalI GATC 5 cut(s) 120, 156, 161, 273, 296
MboI GATC 5 cut(s) 118, 154, 159, 271, 294
MboII GAAGA 2 cut(s) 237, 252
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 83
MlyI GAGTC 2 cut(s) 14, 137
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 2 cut(s) 58, 148
MspA1I CMGCKG 2 cut(s) 24, 268
MspI CCGG 2 cut(s) 131, 194
NcoI CCATGG 1 cut(s) 60
NdeII GATC 5 cut(s) 118, 154, 159, 271, 294
NlaIII CATG 3 cut(s) 44, 64, 88
NlaIV GGNNCC 1 cut(s) 282
NsbI TGCGCA 1 cut(s) 200
NspI RCATGY 1 cut(s) 44
PcsI WCGNNNNNNNCGW 4 cut(s) 109, 118, 123, 248
PkrI GCNGC 1 cut(s) 267
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 2 cut(s) 13, 137
PmaCI CACGTG 1 cut(s) 13
PmlI CACGTG 1 cut(s) 13
PpsI GAGTC 2 cut(s) 13, 137
Ppu21I YACGTR 2 cut(s) 13, 127
PspCI CACGTG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 154
PvuI CGATCG 1 cut(s) 121
PvuII CAGCTG 2 cut(s) 24, 268
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 5 cut(s) 118, 154, 159, 271, 294
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 14, 137
SduI GDGCHC 1 cut(s) 83
SetI ASST 8 cut(s) 15, 26, 129, 140, 220, 270, 279, 318
SinI GGWCC 1 cut(s) 191
SsiI CCGC 1 cut(s) 213
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 151, 252, 288
TaiI ACGT 2 cut(s) 15, 129
TaqI TCGA 2 cut(s) 117, 146
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 191
XceI RCATGY 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.