Rw1G036630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0016398
Physical Location & Seq
Reverse (-)
64531800 .. 64532436
637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036630.1

Sequence Viewer

Length: 414 bp
ATGGAGTCGCACGTGCCCATCAGCTGGACAAACAAGAAGCATGTGCAGTTCTTGAACACCATGGAGGCTTCCTTTGTGTGCTCCATGATTGAAAACAAGGGTCGCCTTGCTCGTCTCGATCGTTTCGTGCCGGACACCTCCGACTCGACCCTAGATCTGATCAAAACACCCCAGACAACCAAAAAATCTGGTCCGGTACGCAGAATGGACGGCGGAGCTGTCAGAAGAACAAGGAGATTATCGTCGCAACCGTTCATTTCTTCGCAGCTGGATCAGGTACTAATTTATGTAATTATCTCTCTGTACAGGTGGTTCCACAGTTTGAGATCGCACTGGTTGGTGATAAGGTCTTATGAGAGATGCCTAGGAAATTATAAAAATGAGAAACTTGCAGAGCCAAAATTATCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.97

Weight (kDa)

10.12

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016398)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29230
malus_domestica MD01G1198900.v1.1 MD07G1266700.v1.1
prunus_persica Prupe.2G292300_v2.0.a1
pyrus_communis pycom07g24450
rosa_chinensis RchiOBHm_Chr1g0376981
rosa_laevigata RLG00000026554
rosa_multiflora Rmu_ssc0000155.1_g000032
rosa_roxburghii Rroxscaffold_4G00281580
rosa_rugosa Rorug01G0400200
rosa_samantha Rh1AG417300 Rh1BG376700 Rh1CG390500 Rh1DG407400
rosa_wichuraiana Rw1G036630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
AccB7I CCANNNNNTGG 1 cut(s) 24
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 279
AcvI CACGTG 1 cut(s) 13
AfaI GTAC 3 cut(s) 198, 279, 305
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 2 cut(s) 55, 92
AluBI AGCT 3 cut(s) 24, 218, 268
AluI AGCT 3 cut(s) 24, 218, 268
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 265
AspA2I CCTAGG 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 352
AvaII GGWCC 1 cut(s) 191
AvrII CCTAGG 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 18
BbrPI CACGTG 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 226
BclI TGATCA 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 152, 365
BglII AGATCT 1 cut(s) 154
BisI GCNGC 1 cut(s) 266
BlnI CCTAGG 1 cut(s) 364
BlsI GCNGC 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 314
BmsI GCATC 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 60, 364
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 338
BseDI CCNNGG 2 cut(s) 60, 364
BseLI CCNNNNNNNGG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 131, 194
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 18, 83
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 5 cut(s) 118, 154, 159, 271, 326
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 314
BspPI GGATC 1 cut(s) 279
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 2 cut(s) 60, 364
BssMI GATC 5 cut(s) 118, 154, 159, 271, 326
BssT1I CCWWGG 2 cut(s) 60, 364
Bst4CI ACNGT 2 cut(s) 252, 320
BstAUI TGTACA 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 13
BstDSI CCRYGG 1 cut(s) 60
BstKTI GATC 5 cut(s) 121, 157, 162, 274, 329
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 5 cut(s) 118, 154, 159, 271, 326
BstMCI CGRYCG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 197, 278, 304
CviAII CATG 3 cut(s) 41, 61, 85
CviJI RGCY 5 cut(s) 24, 68, 218, 268, 397
CviKI_1 RGCY 5 cut(s) 24, 68, 218, 268, 397
CviQI GTAC 3 cut(s) 197, 278, 304
DpnI GATC 5 cut(s) 120, 156, 161, 273, 328
DpnII GATC 5 cut(s) 118, 154, 159, 271, 326
EciI GGCGGA 1 cut(s) 228
Eco130I CCWWGG 2 cut(s) 60, 364
Eco47I GGWCC 1 cut(s) 191
Eco72I CACGTG 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 60, 364
ErhI CCWWGG 2 cut(s) 60, 364
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 3 cut(s) 44, 64, 88
FaiI YATR 6 cut(s) 42, 62, 86, 288, 354, 375
FatI CATG 3 cut(s) 40, 60, 84
FbaI TGATCA 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 2 cut(s) 152, 365
GluI GCNGC 1 cut(s) 266
HapII CCGG 2 cut(s) 131, 194
Hin1II CATG 3 cut(s) 44, 64, 88
HinfI GANTC 2 cut(s) 5, 143
HpaII CCGG 2 cut(s) 131, 194
HphI GGTGA 1 cut(s) 352
Hpy188I TCNGA 3 cut(s) 142, 159, 224
Hpy188III TCNNGA 2 cut(s) 52, 116
Hpy99I CGWCG 1 cut(s) 247
HpyCH4III ACNGT 2 cut(s) 252, 320
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 2 cut(s) 46, 392
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 3 cut(s) 44, 64, 88
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 5 cut(s) 118, 154, 159, 271, 326
LmnI GCTCC 2 cut(s) 86, 215
LpnPI CCDG 9 cut(s) 10, 144, 174, 185, 207, 254, 260, 292, 319
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 350
MaeI CTAG 2 cut(s) 152, 365
MaeII ACGT 1 cut(s) 12
MalI GATC 5 cut(s) 120, 156, 161, 273, 328
MboI GATC 5 cut(s) 118, 154, 159, 271, 326
MboII GAAGA 2 cut(s) 237, 252
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 18, 83
MluCI AATT 4 cut(s) 282, 291, 370, 401
MlyI GAGTC 2 cut(s) 14, 137
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 2 cut(s) 58, 148
MspA1I CMGCKG 2 cut(s) 24, 268
MspI CCGG 2 cut(s) 131, 194
NcoI CCATGG 1 cut(s) 60
NdeII GATC 5 cut(s) 118, 154, 159, 271, 326
NlaIII CATG 3 cut(s) 44, 64, 88
NlaIV GGNNCC 1 cut(s) 314
NspI RCATGY 1 cut(s) 44
PcsI WCGNNNNNNNCGW 4 cut(s) 109, 118, 123, 248
PflMI CCANNNNNTGG 1 cut(s) 24
PkrI GCNGC 1 cut(s) 267
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 2 cut(s) 13, 137
PmaCI CACGTG 1 cut(s) 13
PmlI CACGTG 1 cut(s) 13
PpsI GAGTC 2 cut(s) 13, 137
Ppu21I YACGTR 1 cut(s) 13
PsiI TTATAA 1 cut(s) 375
PspCI CACGTG 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 191
PsrI GAACNNNNNNTAC 2 cut(s) 296, 328
PsuI RGATCY 1 cut(s) 154
PvuI CGATCG 1 cut(s) 121
PvuII CAGCTG 2 cut(s) 24, 268
RsaI GTAC 3 cut(s) 198, 279, 305
RsaNI GTAC 3 cut(s) 197, 278, 304
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 5 cut(s) 118, 154, 159, 271, 326
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 14, 137
SduI GDGCHC 2 cut(s) 18, 83
SetI ASST 8 cut(s) 15, 26, 140, 220, 270, 279, 311, 350
SfaNI GCATC 1 cut(s) 350
SinI GGWCC 1 cut(s) 191
Sse9I AATT 4 cut(s) 282, 291, 370, 401
SsiI CCGC 1 cut(s) 213
SspMI CTAG 2 cut(s) 152, 365
StyI CCWWGG 2 cut(s) 60, 364
TaaI ACNGT 2 cut(s) 252, 320
TaiI ACGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 117, 146
TasI AATT 4 cut(s) 282, 291, 370, 401
TatI WGTACW 1 cut(s) 303
TscAI CASTG 1 cut(s) 338
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 244
TspRI CASTG 1 cut(s) 338
Van91I CCANNNNNTGG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 191
XceI RCATGY 1 cut(s) 44
XmaJI CCTAGG 1 cut(s) 364
XspI CTAG 2 cut(s) 152, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.